RchiOBHm_Chr7g0216911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018639
Physical Location & Seq
Forward (+)
34712522 .. 34713123
602 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19411

Sequence Viewer

Length: 561 bp
ATGTTGGTCTGGGATGGCAATCTTAGCAGCGGGGTCCTTAGGCCGAAGCATGGTCCATGGCGGGTGTGTGAGGGATCGATCTCGGTGAGGGAAGATCGATGTCGATCTGTCTCTCCCGGATCGTGGCCGAGGGCCGACGCGGCTATCCGGCGGCGTTTTCTGGCGTCTCCTCGGTGGCTGGATTTGGTACGGCGTCTGAGTTCTAGATCTCCCGGCGAGGTTTTTGCTCAGTTCTGGATCTGGATTTGGACATTGGTCGGGGTGTTAGGTGGCCTGCGTAGAGGTGAGGTGGTGCGACGGCGTGGGCATGCCGGGCGGCGGTGGTGCGCCCCAAGGGGGTGGTCGGGTGCTGGTGGGTGGTTCTGCTGGGCTGCTGCGTTGGGTCCTTGGGGAAGATGGTGGATGGGCCGAGTTTGTGCTTCTGGACCTTGCTGGTGGTTTTCCATTTCTGGTTGTGTTTTTTGTTGCTTTGTTGGAAATAAGCTCCAATCGTGTTTTGGTTGGAGCCAATGGCCTGTGTGCCAGTCTTTGCACCTTGTGTGCCAGTTTTTCTCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.23

Weight (kDa)

11.19

Isoelectric Point (pI)

68.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018639)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0216911
rosa_multiflora Rmu_sc0001962.1_g000032
rosa_roxburghii Rroxscaffold_4G00310480 Rroxscaffold_4G00311460
rosa_rugosa Rorug02G0550200 Rorug03G0263200
rosa_samantha Rh1AG256000 Rh2BG061600 Rh2BG373300 Rh4BG201700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 6 cut(s) 30, 61, 140, 151, 316, 319
AclWI GGATC 3 cut(s) 82, 127, 245
AcoI YGGCCR 1 cut(s) 125
AcyI GRCGYC 2 cut(s) 164, 193
AdeI CACNNNGTG 1 cut(s) 538
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 4 cut(s) 50, 123, 318, 336
AluBI AGCT 1 cut(s) 484
AluI AGCT 1 cut(s) 484
Alw26I GTCTC 2 cut(s) 115, 171
AlwI GGATC 3 cut(s) 82, 127, 245
AoxI GGCC 6 cut(s) 41, 125, 132, 271, 406, 512
ApeKI GCWGC 3 cut(s) 27, 371, 374
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 6 cut(s) 34, 53, 132, 383, 406, 425
AsuC2I CCSGG 3 cut(s) 117, 213, 313
AsuHPI GGTGA 2 cut(s) 97, 296
AvaII GGWCC 4 cut(s) 34, 53, 383, 425
AxyI CCTNAGG 1 cut(s) 38
BbvI GCAGC 3 cut(s) 39, 358, 361
BccI CCATC 3 cut(s) 8, 390, 397
BceAI ACGGC 2 cut(s) 206, 314
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BcnI CCSGG 3 cut(s) 117, 213, 313
BcoDI GTCTC 2 cut(s) 115, 171
BfaI CTAG 2 cut(s) 204, 555
BglI GCCNNNNNGGC 1 cut(s) 140
BglII AGATCT 1 cut(s) 206
BisI GCNGC 6 cut(s) 28, 141, 152, 317, 372, 375
BlsI GCNGC 6 cut(s) 29, 142, 153, 318, 373, 376
Bme1390I CCNGG 3 cut(s) 117, 213, 313
Bme18I GGWCC 4 cut(s) 34, 53, 383, 425
BmgT120I GGNCC 6 cut(s) 34, 53, 132, 383, 406, 425
BmiI GGNNCC 3 cut(s) 35, 384, 506
BmrFI CCNGG 3 cut(s) 117, 213, 313
BoxI GACNNNNGTC 1 cut(s) 254
BpuMI CCSGG 3 cut(s) 117, 213, 313
Bsa29I ATCGAT 2 cut(s) 77, 97
BsaBI GATNNNNATC 2 cut(s) 18, 103
BsaHI GRCGYC 2 cut(s) 164, 193
BsaJI CCNNGG 5 cut(s) 56, 128, 170, 332, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 123, 318, 336
Bse1I ACTGG 2 cut(s) 523, 544
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 2 cut(s) 18, 103
BseCI ATCGAT 2 cut(s) 77, 97
BseDI CCNNGG 5 cut(s) 56, 128, 170, 332, 386
BseGI GGATG 2 cut(s) 19, 408
BseJI GATNNNNATC 2 cut(s) 18, 103
BseLI CCNNNNNNNGG 4 cut(s) 50, 123, 318, 336
BseMII CTCAG 2 cut(s) 188, 242
BseNI ACTGG 2 cut(s) 523, 544
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 39, 358, 361
BseYI CCCAGC 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 6 cut(s) 43, 127, 134, 273, 408, 514
BshVI ATCGAT 2 cut(s) 77, 97
BsiSI CCGG 4 cut(s) 117, 148, 213, 312
BslI CCNNNNNNNGG 4 cut(s) 50, 123, 318, 336
BsmAI GTCTC 2 cut(s) 115, 171
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 6 cut(s) 43, 127, 134, 273, 408, 514
Bsp143I GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 6 cut(s) 30, 61, 140, 151, 316, 319
BspANI GGCC 6 cut(s) 43, 127, 134, 273, 408, 514
BspCNI CTCAG 2 cut(s) 189, 241
BspDI ATCGAT 2 cut(s) 77, 97
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 35, 384, 506
BspPI GGATC 3 cut(s) 82, 127, 245
BsrI ACTGG 2 cut(s) 523, 544
BssECI CCNNGG 5 cut(s) 56, 128, 170, 332, 386
BssMI GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
BssNI GRCGYC 2 cut(s) 164, 193
BssT1I CCWWGG 3 cut(s) 56, 332, 386
BstACI GRCGYC 2 cut(s) 164, 193
BstC8I GCNNGC 2 cut(s) 275, 309
BstDEI CTNAG 4 cut(s) 23, 38, 197, 228
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 19, 408
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 7 cut(s) 77, 81, 97, 107, 122, 209, 240
BstMAI GTCTC 2 cut(s) 115, 171
BstMBI GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
BstMWI GCNNNNNNNGC 3 cut(s) 24, 140, 313
BstNSI RCATGY 1 cut(s) 311
BstPAI GACNNNNGTC 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 115, 211, 311
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 39, 358, 361
BstX2I RGATCY 2 cut(s) 206, 237
BstXI CCANNNNNNTGG 1 cut(s) 339
BstYI RGATCY 2 cut(s) 206, 237
Bsu15I ATCGAT 2 cut(s) 77, 97
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 6 cut(s) 43, 127, 134, 273, 408, 514
BsuTUI ATCGAT 2 cut(s) 77, 97
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 19, 408
Cac8I GCNNGC 2 cut(s) 275, 309
CfoI GCGC 1 cut(s) 329
Cfr13I GGNCC 6 cut(s) 34, 53, 132, 383, 406, 425
ClaI ATCGAT 2 cut(s) 77, 97
CseI GACGC 3 cut(s) 146, 153, 182
Csp6I GTAC 1 cut(s) 188
CviAII CATG 3 cut(s) 50, 57, 308
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 4 cut(s) 23, 38, 197, 228
DpnI GATC 7 cut(s) 76, 80, 96, 106, 121, 208, 239
DpnII GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
DraIII CACNNNGTG 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 125
Eco130I CCWWGG 3 cut(s) 56, 332, 386
Eco47I GGWCC 4 cut(s) 34, 53, 383, 425
Eco81I CCTNAGG 1 cut(s) 38
EcoO109I RGGNCCY 2 cut(s) 34, 383
EcoT14I CCWWGG 3 cut(s) 56, 332, 386
ErhI CCWWGG 3 cut(s) 56, 332, 386
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 53, 60, 311
FaiI YATR 3 cut(s) 51, 58, 309
FatI CATG 3 cut(s) 49, 56, 307
FauI CCCGC 2 cut(s) 23, 54
Fnu4HI GCNGC 6 cut(s) 28, 141, 152, 317, 372, 375
FokI GGATG 2 cut(s) 26, 415
Fsp4HI GCNGC 6 cut(s) 28, 141, 152, 317, 372, 375
FspBI CTAG 2 cut(s) 204, 555
GlaI GCGC 1 cut(s) 328
GluI GCNGC 6 cut(s) 28, 141, 152, 317, 372, 375
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 6 cut(s) 43, 127, 134, 273, 408, 514
HapII CCGG 4 cut(s) 117, 148, 213, 312
HgaI GACGC 3 cut(s) 146, 153, 182
HhaI GCGC 1 cut(s) 329
Hin1I GRCGYC 2 cut(s) 164, 193
Hin1II CATG 3 cut(s) 53, 60, 311
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HpaII CCGG 4 cut(s) 117, 148, 213, 312
HphI GGTGA 2 cut(s) 97, 296
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 4 cut(s) 204, 235, 241, 423
Hpy99I CGWCG 2 cut(s) 140, 300
HpyCH4V TGCA 1 cut(s) 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 140, 313
HpyF3I CTNAG 4 cut(s) 23, 38, 197, 228
Hsp92I GRCGYC 2 cut(s) 164, 193
Hsp92II CATG 3 cut(s) 53, 60, 311
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
LmnI GCTCC 2 cut(s) 489, 504
Lsp1109I GCAGC 3 cut(s) 39, 358, 361
MaeI CTAG 2 cut(s) 204, 555
MalI GATC 7 cut(s) 76, 80, 96, 106, 121, 208, 239
MboI GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
MboII GAAGA 2 cut(s) 104, 405
MflI RGATCY 2 cut(s) 206, 237
MmeI TCCRAC 2 cut(s) 454, 482
MnlI CCTC 7 cut(s) 64, 81, 123, 180, 211, 275, 280
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 4 cut(s) 117, 148, 213, 312
MspR9I CCNGG 3 cut(s) 117, 213, 313
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 24, 140, 313
NciI CCSGG 3 cut(s) 117, 213, 313
NcoI CCATGG 1 cut(s) 56
NdeII GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
NlaIII CATG 3 cut(s) 53, 60, 311
NlaIV GGNNCC 3 cut(s) 35, 384, 506
NmeAIII GCCGAG 2 cut(s) 153, 434
NspI RCATGY 1 cut(s) 311
PaeI GCATGC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 6 cut(s) 29, 142, 153, 318, 373, 376
PpuMI RGGWCCY 2 cut(s) 34, 383
PshAI GACNNNNGTC 1 cut(s) 254
Psp5II RGGWCCY 2 cut(s) 34, 383
PspFI CCCAGC 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 35, 384, 506
PspPI GGNCC 6 cut(s) 34, 53, 132, 383, 406, 425
PspPPI RGGWCCY 2 cut(s) 34, 383
PsuI RGATCY 2 cut(s) 206, 237
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SatI GCNGC 6 cut(s) 28, 141, 152, 317, 372, 375
Sau3AI GATC 7 cut(s) 74, 78, 94, 104, 119, 206, 237
Sau96I GGNCC 6 cut(s) 34, 53, 132, 383, 406, 425
ScrFI CCNGG 3 cut(s) 117, 213, 313
SetI ASST 8 cut(s) 222, 271, 286, 291, 430, 486, 537, 560
SinI GGWCC 4 cut(s) 34, 53, 383, 425
SphI GCATGC 1 cut(s) 311
SsiI CCGC 6 cut(s) 30, 61, 140, 151, 316, 319
SspMI CTAG 2 cut(s) 204, 555
StyD4I CCNGG 3 cut(s) 115, 211, 311
StyI CCWWGG 3 cut(s) 56, 332, 386
TaqI TCGA 3 cut(s) 77, 97, 103
TauI GCSGC 3 cut(s) 143, 154, 319
TseI GCWGC 3 cut(s) 27, 371, 374
VpaK11BI GGWCC 4 cut(s) 34, 53, 383, 425
XbaI TCTAGA 1 cut(s) 203
XceI RCATGY 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XspI CTAG 2 cut(s) 204, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.