Rroxscaffold_4G00310480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018639
Physical Location & Seq
Forward (+)
32482708 .. 32484958
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310480.1

Sequence Viewer

Length: 639 bp
ATGGGTTGTTGGCGCAAGATCCATGACCGGTCGTCGATGGGTCTTTCTCGCTACGGGCCGGGTCGTGGGCGAAGGCGACCAAAGTGCGGCGAAGGGGTGCGGTTGGCGGCGGCGATCTCGGACCTCTTTTCCGCAACGGGGATCTATGCGGCGGCGGGCTCTCGATCCCATGGCGGTGATGAGCCGGGTGAGGGCTTGACTCGTCCGGGATCCGGTTTAGTCCGCCGATGGCGTTGTGGGGTGGTCCGCTATGGGTCGTGGTGGTGCGGTGGTACAGGAAGCGGCGTGGTGGTGGTGTGGTCCAAGGTGGCGGCCCGGCACCGTGTTGTCGGCGGCCGGCTTTGTGGTGCGGCGTTGCGGTGGAGTGGAGATGCATTACGGCGTCGTGACGGTGCAAGCCGACGATGTGAGGACGACGGAGGCGTTGGCGCAAGCTTGCCGGAGGTGGAAGTTGGGTCGGGCCTCCGTGCTTGGGCATTATTGCTTGGACGGGCTCTTTTTTTTAGTTGGTTTTGCTTTTGTTGGTTGTTTCTTTTCGATTGTTGCTTTGTCCGTAATAACCTCCAACCGTATTCCGTAGGAGGCCTTGGCTCCGTATGCCGGTCATTGCACCTTGTGTGCCCGTTTTGCTCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.95

Weight (kDa)

10.06

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018639)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0216911
rosa_multiflora Rmu_sc0001962.1_g000032
rosa_roxburghii Rroxscaffold_4G00310480 Rroxscaffold_4G00311460
rosa_rugosa Rorug02G0550200 Rorug03G0263200
rosa_samantha Rh1AG256000 Rh2BG061600 Rh2BG373300 Rh4BG201700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AclWI GGATC 5 cut(s) 13, 149, 159, 204, 217
AcoI YGGCCR 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 382
AdeI CACNNNGTG 1 cut(s) 616
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 7 cut(s) 65, 86, 138, 191, 212, 472, 600
AgeI ACCGGT 1 cut(s) 27
AhdI GACNNNNNGTC 1 cut(s) 31
AluBI AGCT 1 cut(s) 435
AluI AGCT 1 cut(s) 435
AlwI GGATC 5 cut(s) 13, 149, 159, 204, 217
AoxI GGCC 5 cut(s) 56, 312, 334, 460, 583
AsiGI ACCGGT 1 cut(s) 27
AspLEI GCGC 2 cut(s) 15, 431
AspS9I GGNCC 6 cut(s) 56, 121, 244, 300, 313, 460
AsuC2I CCSGG 4 cut(s) 60, 186, 207, 316
AsuHPI GGTGA 2 cut(s) 188, 200
AvaII GGWCC 3 cut(s) 121, 244, 300
BaeGI GKGCMC 1 cut(s) 623
BamHI GGATCC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 2 cut(s) 161, 496
BccI CCATC 2 cut(s) 31, 222
BceAI ACGGC 1 cut(s) 395
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BcnI CCSGG 4 cut(s) 60, 186, 207, 316
BfaI CTAG 1 cut(s) 633
BisI GCNGC 9 cut(s) 88, 108, 111, 150, 153, 283, 312, 334, 351
BlsI GCNGC 9 cut(s) 89, 109, 112, 151, 154, 284, 313, 335, 352
Bme1390I CCNGG 4 cut(s) 60, 186, 207, 316
Bme18I GGWCC 3 cut(s) 121, 244, 300
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 6 cut(s) 56, 121, 244, 300, 313, 460
BmiI GGNNCC 3 cut(s) 211, 320, 592
BmrFI CCNGG 4 cut(s) 60, 186, 207, 316
BmsI GCATC 1 cut(s) 361
BpuMI CCSGG 4 cut(s) 60, 186, 207, 316
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 3 cut(s) 169, 303, 586
BsaWI WCCGGW 2 cut(s) 27, 212
Bsc4I CCNNNNNNNGG 7 cut(s) 65, 86, 138, 191, 212, 472, 600
Bse118I RCCGGY 3 cut(s) 27, 336, 600
Bse3DI GCAATG 1 cut(s) 605
BseDI CCNNGG 3 cut(s) 169, 303, 586
BseLI CCNNNNNNNGG 7 cut(s) 65, 86, 138, 191, 212, 472, 600
BseMI GCAATG 1 cut(s) 605
BseSI GKGCMC 1 cut(s) 623
BseX3I CGGCCG 1 cut(s) 334
Bsh1285I CGRYCG 2 cut(s) 32, 337
BshFI GGCC 5 cut(s) 58, 314, 336, 462, 585
BshNI GGYRCC 1 cut(s) 318
BshTI ACCGGT 1 cut(s) 27
BsiEI CGRYCG 2 cut(s) 32, 337
BsiSI CCGG 9 cut(s) 28, 59, 185, 206, 213, 316, 337, 440, 601
BslI CCNNNNNNNGG 7 cut(s) 65, 86, 138, 191, 212, 472, 600
BsnI GGCC 5 cut(s) 58, 314, 336, 462, 585
Bsp1286I GDGCHC 3 cut(s) 161, 496, 623
Bsp143I GATC 5 cut(s) 18, 114, 141, 164, 209
Bsp19I CCATGG 1 cut(s) 169
BspANI GGCC 5 cut(s) 58, 314, 336, 462, 585
BspLI GGNNCC 3 cut(s) 211, 320, 592
BspPI GGATC 5 cut(s) 13, 149, 159, 204, 217
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 605
BsrFI RCCGGY 3 cut(s) 27, 336, 600
BssAI RCCGGY 3 cut(s) 27, 336, 600
BssECI CCNNGG 3 cut(s) 169, 303, 586
BssMI GATC 5 cut(s) 18, 114, 141, 164, 209
BssNI GRCGYC 1 cut(s) 382
BssT1I CCWWGG 3 cut(s) 169, 303, 586
Bst4CI ACNGT 3 cut(s) 323, 392, 570
BstACI GRCGYC 1 cut(s) 382
BstC8I GCNNGC 5 cut(s) 157, 338, 397, 433, 437
BstDSI CCRYGG 1 cut(s) 169
BstHHI GCGC 2 cut(s) 15, 431
BstKTI GATC 5 cut(s) 21, 117, 144, 167, 212
BstMBI GATC 5 cut(s) 18, 114, 141, 164, 209
BstMCI CGRYCG 2 cut(s) 32, 337
BstMWI GCNNNNNNNGC 2 cut(s) 597, 627
BstSCI CCNGG 4 cut(s) 58, 184, 205, 314
BstSLI GKGCMC 1 cut(s) 623
BstX2I RGATCY 3 cut(s) 18, 141, 209
BstYI RGATCY 3 cut(s) 18, 141, 209
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 5 cut(s) 58, 314, 336, 462, 585
BtgI CCRYGG 1 cut(s) 169
Cac8I GCNNGC 5 cut(s) 157, 338, 397, 433, 437
CfoI GCGC 2 cut(s) 15, 431
Cfr10I RCCGGY 3 cut(s) 27, 336, 600
Cfr13I GGNCC 6 cut(s) 56, 121, 244, 300, 313, 460
CseI GACGC 1 cut(s) 371
Csp6I GTAC 1 cut(s) 273
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 2 cut(s) 23, 170
CviQI GTAC 1 cut(s) 273
DpnI GATC 5 cut(s) 20, 116, 143, 166, 211
DpnII GATC 5 cut(s) 18, 114, 141, 164, 209
DraIII CACNNNGTG 1 cut(s) 616
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 334
EagI CGGCCG 1 cut(s) 334
Eam1105I GACNNNNNGTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 212
EclXI CGGCCG 1 cut(s) 334
Eco130I CCWWGG 3 cut(s) 169, 303, 586
Eco147I AGGCCT 1 cut(s) 585
Eco24I GRGCYC 2 cut(s) 161, 496
Eco47I GGWCC 3 cut(s) 121, 244, 300
Eco52I CGGCCG 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 169, 303, 586
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 2 cut(s) 161, 496
ErhI CCWWGG 3 cut(s) 169, 303, 586
FaeI CATG 2 cut(s) 26, 173
FaiI YATR 5 cut(s) 24, 147, 171, 252, 598
FatI CATG 2 cut(s) 22, 169
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 9 cut(s) 88, 108, 111, 150, 153, 283, 312, 334, 351
FriOI GRGCYC 2 cut(s) 161, 496
Fsp4HI GCNGC 9 cut(s) 88, 108, 111, 150, 153, 283, 312, 334, 351
FspBI CTAG 1 cut(s) 633
GlaI GCGC 2 cut(s) 14, 430
GluI GCNGC 9 cut(s) 88, 108, 111, 150, 153, 283, 312, 334, 351
HaeIII GGCC 5 cut(s) 58, 314, 336, 462, 585
HapII CCGG 9 cut(s) 28, 59, 185, 206, 213, 316, 337, 440, 601
HgaI GACGC 1 cut(s) 371
HhaI GCGC 2 cut(s) 15, 431
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 2 cut(s) 26, 173
Hin6I GCGC 2 cut(s) 13, 429
HinP1I GCGC 2 cut(s) 13, 429
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 1 cut(s) 199
HpaII CCGG 9 cut(s) 28, 59, 185, 206, 213, 316, 337, 440, 601
HphI GGTGA 2 cut(s) 188, 200
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 162, 386
Hpy99I CGWCG 4 cut(s) 37, 387, 405, 419
HpyAV CCTTC 2 cut(s) 66, 86
HpyCH4III ACNGT 3 cut(s) 323, 392, 570
HpyCH4V TGCA 3 cut(s) 374, 395, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 597, 627
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 2 cut(s) 26, 173
HspAI GCGC 2 cut(s) 13, 429
KroI GCCGGC 1 cut(s) 336
KroNI GCCGGC 1 cut(s) 338
Kzo9I GATC 5 cut(s) 18, 114, 141, 164, 209
LmnI GCTCC 1 cut(s) 596
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 633
MaeIII GTNAC 1 cut(s) 386
MalI GATC 5 cut(s) 20, 116, 143, 166, 211
MboI GATC 5 cut(s) 18, 114, 141, 164, 209
MflI RGATCY 3 cut(s) 18, 141, 209
MhlI GDGCHC 3 cut(s) 161, 496, 623
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 8 cut(s) 134, 184, 403, 413, 436, 473, 572, 575
Mph1103I ATGCAT 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 9 cut(s) 28, 59, 185, 206, 213, 316, 337, 440, 601
MspR9I CCNGG 4 cut(s) 60, 186, 207, 316
MwoI GCNNNNNNNGC 2 cut(s) 597, 627
NaeI GCCGGC 1 cut(s) 338
NciI CCSGG 4 cut(s) 60, 186, 207, 316
NcoI CCATGG 1 cut(s) 169
NdeII GATC 5 cut(s) 18, 114, 141, 164, 209
NgoMIV GCCGGC 1 cut(s) 336
NlaIII CATG 2 cut(s) 26, 173
NlaIV GGNNCC 3 cut(s) 211, 320, 592
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 376
PceI AGGCCT 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PdiI GCCGGC 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 205
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 9 cut(s) 89, 109, 112, 151, 154, 284, 313, 335, 352
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 3 cut(s) 211, 320, 592
PspPI GGNCC 6 cut(s) 56, 121, 244, 300, 313, 460
PsuI RGATCY 3 cut(s) 18, 141, 209
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 9 cut(s) 88, 108, 111, 150, 153, 283, 312, 334, 351
Sau3AI GATC 5 cut(s) 18, 114, 141, 164, 209
Sau96I GGNCC 6 cut(s) 56, 121, 244, 300, 313, 460
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 4 cut(s) 60, 186, 207, 316
SduI GDGCHC 3 cut(s) 161, 496, 623
SetI ASST 7 cut(s) 126, 309, 437, 447, 564, 615, 638
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 3 cut(s) 121, 244, 300
SmiMI CAYNNNNRTG 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 585
SspMI CTAG 1 cut(s) 633
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 4 cut(s) 58, 184, 205, 314
StyI CCWWGG 3 cut(s) 169, 303, 586
TaaI ACNGT 3 cut(s) 323, 392, 570
TaqI TCGA 3 cut(s) 35, 163, 537
TauI GCSGC 9 cut(s) 90, 110, 113, 152, 155, 285, 314, 336, 353
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspGWI ACGGA 5 cut(s) 432, 455, 542, 565, 583
VpaK11BI GGWCC 3 cut(s) 121, 244, 300
XspI CTAG 1 cut(s) 633
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.