Rroxscaffold_4G00311460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018639
Physical Location & Seq
Forward (+)
33988692 .. 33989239
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00311460.1

Sequence Viewer

Length: 468 bp
ATGATGGTTTGGGCTAGCAGTGTAGGTCTATGGCAGCAGTTTGGTCCGGGGTTGGAGAATGGTGACTTGATTTCGGAGGGGGCTGATCGATCTAGATCTATTCTTTTGGGATCGGGGACAAGGACAGATGTGAAGCAGCGTTGGGGTGGGGCTTGCCGGCAACTGGGATCTGGGCAGCGGCTGAGACTTCGATCTTATGGCAGAGACGAGCCGGGAGAGAGTCTGACTCACTTTGGGTTGCCGGCTTGGGCGTCAGCCGGGTTTTGGGTGGTCTTCGATGCAGCGTGGCGGCGTGGTGGTGCAAGGAGACAGCGTGGTGTTGGCAGAGTGCTGTGGCAGCAGGTTCGGTGGGCTGTAGCGCTTGGTCCTTGGGGGAGTGGTGGTTGGGCCGGGCCTTTGCTTTTGGGCCTTACGGATGTGAAGGGCTTTGTGCCGGTCTATGCACCTTGTGTGCCTTATTTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.91

Weight (kDa)

10.73

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018639)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0216911
rosa_multiflora Rmu_sc0001962.1_g000032
rosa_roxburghii Rroxscaffold_4G00310480 Rroxscaffold_4G00311460
rosa_rugosa Rorug02G0550200 Rorug03G0263200
rosa_samantha Rh1AG256000 Rh2BG061600 Rh2BG373300 Rh4BG201700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AciI CCGC 2 cut(s) 178, 289
AclWI GGATC 2 cut(s) 118, 175
AcyI GRCGYC 1 cut(s) 251
AdeI CACNNNGTG 1 cut(s) 449
AfeI AGCGCT 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 163, 264
Alw26I GTCTC 3 cut(s) 178, 198, 301
AlwI GGATC 2 cut(s) 118, 175
AlwNI CAGNNNCTG 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 360
AoxI GGCC 3 cut(s) 387, 392, 406
ApeKI GCWGC 5 cut(s) 34, 136, 175, 281, 337
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 5 cut(s) 44, 365, 387, 392, 406
AsuC2I CCSGG 4 cut(s) 48, 213, 259, 391
AsuHPI GGTGA 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 14
AvaII GGWCC 2 cut(s) 44, 365
BbsI GAAGAC 1 cut(s) 265
BbvI GCAGC 5 cut(s) 46, 148, 187, 293, 349
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BcnI CCSGG 4 cut(s) 48, 213, 259, 391
BcoDI GTCTC 3 cut(s) 178, 198, 301
BfaI CTAG 3 cut(s) 15, 93, 466
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 331
BglII AGATCT 1 cut(s) 95
BisI GCNGC 7 cut(s) 35, 137, 176, 179, 282, 290, 338
BlsI GCNGC 7 cut(s) 36, 138, 177, 180, 283, 291, 339
Bme1390I CCNGG 4 cut(s) 48, 213, 259, 391
Bme18I GGWCC 2 cut(s) 44, 365
BmgT120I GGNCC 5 cut(s) 44, 365, 387, 392, 406
BmrFI CCNGG 4 cut(s) 48, 213, 259, 391
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 268
BmtI GCTAGC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpuMI CCSGG 4 cut(s) 48, 213, 259, 391
Bsa29I ATCGAT 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 47, 368
BsaXI ACNNNNNCTCC 4 cut(s) 298, 328, 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 264
Bse118I RCCGGY 3 cut(s) 156, 241, 433
Bse1I ACTGG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 94
BseCI ATCGAT 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 47, 368
BseGI GGATG 1 cut(s) 421
BseJI GATNNNNATC 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 163, 264
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 5 cut(s) 46, 148, 187, 293, 349
BshFI GGCC 3 cut(s) 389, 394, 408
BshVI ATCGAT 1 cut(s) 88
BsiSI CCGG 7 cut(s) 47, 157, 212, 242, 258, 390, 434
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 163, 264
BsmAI GTCTC 3 cut(s) 178, 198, 301
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 3 cut(s) 389, 394, 408
Bsp143I GATC 6 cut(s) 85, 89, 95, 110, 167, 191
BspACI CCGC 2 cut(s) 178, 289
BspANI GGCC 3 cut(s) 389, 394, 408
BspCNI CTCAG 1 cut(s) 174
BspDI ATCGAT 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 331
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 2 cut(s) 118, 175
BsrFI RCCGGY 3 cut(s) 156, 241, 433
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 3 cut(s) 156, 241, 433
BssECI CCNNGG 2 cut(s) 47, 368
BssMI GATC 6 cut(s) 85, 89, 95, 110, 167, 191
BssNI GRCGYC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 251
BstC8I GCNNGC 4 cut(s) 16, 154, 158, 243
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 421
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 6 cut(s) 88, 92, 98, 113, 170, 194
BstMAI GTCTC 3 cut(s) 178, 198, 301
BstMBI GATC 6 cut(s) 85, 89, 95, 110, 167, 191
BstMWI GCNNNNNNNGC 2 cut(s) 337, 460
BstSCI CCNGG 4 cut(s) 46, 211, 257, 389
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 5 cut(s) 46, 148, 187, 293, 349
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 2 cut(s) 95, 167
BstYI RGATCY 2 cut(s) 95, 167
Bsu15I ATCGAT 1 cut(s) 88
BsuRI GGCC 3 cut(s) 389, 394, 408
BsuTUI ATCGAT 1 cut(s) 88
BtsCI GGATG 1 cut(s) 421
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 4 cut(s) 16, 154, 158, 243
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 3 cut(s) 156, 241, 433
Cfr13I GGNCC 5 cut(s) 44, 365, 387, 392, 406
ClaI ATCGAT 1 cut(s) 88
CseI GACGC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 182
DpnI GATC 6 cut(s) 87, 91, 97, 112, 169, 193
DpnII GATC 6 cut(s) 85, 89, 95, 110, 167, 191
DraIII CACNNNGTG 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 368
Eco47I GGWCC 2 cut(s) 44, 365
Eco47III AGCGCT 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
Esp3I CGTCTC 1 cut(s) 198
FaiI YATR 3 cut(s) 31, 198, 441
FaqI GGGAC 1 cut(s) 130
Fnu4HI GCNGC 7 cut(s) 35, 137, 176, 179, 282, 290, 338
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 7 cut(s) 35, 137, 176, 179, 282, 290, 338
FspBI CTAG 3 cut(s) 15, 93, 466
GlaI GCGC 1 cut(s) 360
GluI GCNGC 7 cut(s) 35, 137, 176, 179, 282, 290, 338
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 3 cut(s) 389, 394, 408
HapII CCGG 7 cut(s) 47, 157, 212, 242, 258, 390, 434
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 251
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 2 cut(s) 220, 226
HpaII CCGG 7 cut(s) 47, 157, 212, 242, 258, 390, 434
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 76, 225
Hpy188III TCNNGA 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 281, 302, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 460
HpyF3I CTNAG 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 251
HspAI GCGC 1 cut(s) 359
KroI GCCGGC 2 cut(s) 156, 241
KroNI GCCGGC 2 cut(s) 158, 243
Kzo9I GATC 6 cut(s) 85, 89, 95, 110, 167, 191
Lsp1109I GCAGC 5 cut(s) 46, 148, 187, 293, 349
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 15, 93, 466
MaeIII GTNAC 1 cut(s) 62
MalI GATC 6 cut(s) 87, 91, 97, 112, 169, 193
MboI GATC 6 cut(s) 85, 89, 95, 110, 167, 191
MboII GAAGA 1 cut(s) 265
MflI RGATCY 2 cut(s) 95, 167
MlyI GAGTC 2 cut(s) 220, 229
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 1 cut(s) 70
MroNI GCCGGC 2 cut(s) 156, 241
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 7 cut(s) 47, 157, 212, 242, 258, 390, 434
MspR9I CCNGG 4 cut(s) 48, 213, 259, 391
MwoI GCNNNNNNNGC 2 cut(s) 337, 460
NaeI GCCGGC 2 cut(s) 158, 243
NciI CCSGG 4 cut(s) 48, 213, 259, 391
NdeII GATC 6 cut(s) 85, 89, 95, 110, 167, 191
NgoMIV GCCGGC 2 cut(s) 156, 241
NheI GCTAGC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 62
PdiI GCCGGC 2 cut(s) 158, 243
PkrI GCNGC 7 cut(s) 36, 138, 177, 180, 283, 291, 339
PleI GAGTC 2 cut(s) 220, 228
PpsI GAGTC 2 cut(s) 220, 228
PspPI GGNCC 5 cut(s) 44, 365, 387, 392, 406
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 95, 167
SatI GCNGC 7 cut(s) 35, 137, 176, 179, 282, 290, 338
Sau3AI GATC 6 cut(s) 85, 89, 95, 110, 167, 191
Sau96I GGNCC 5 cut(s) 44, 365, 387, 392, 406
SchI GAGTC 2 cut(s) 220, 229
ScrFI CCNGG 4 cut(s) 48, 213, 259, 391
SetI ASST 3 cut(s) 28, 345, 448
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 44, 365
SsiI CCGC 2 cut(s) 178, 289
SspMI CTAG 3 cut(s) 15, 93, 466
StyD4I CCNGG 4 cut(s) 46, 211, 257, 389
StyI CCWWGG 1 cut(s) 368
TaqI TCGA 3 cut(s) 88, 190, 276
TauI GCSGC 2 cut(s) 181, 292
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 5 cut(s) 34, 136, 175, 281, 337
Tsp45I GTSAC 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 44, 365
XbaI TCTAGA 1 cut(s) 92
XspI CTAG 3 cut(s) 15, 93, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.