Rh1AG256000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018639
Physical Location & Seq
Reverse (-)
47220097 .. 47220546
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG256000.1

Sequence Viewer

Length: 450 bp
ATGGGTTGTTTGCAGCGTGATCCATGGCTGGCTGTCGATGGGTCTTTCTCGCTGTGGGCTGAGTCGTGGGCGAAGGCAGCCAAAGTGCAGCGAAGGGGTGGGGCTGGCCGGCGGCGATCTCGGACCTCTTTTTTGCAACAGGGATCTAGGCAGCGGCTGGGCTTTCGATCTCATGGCAGCGATGAGCCAGGTGAGGGCTTGGATCTGTCTGGGATATGGTTTCGTCTGTTGATGGCGTTGAGGGGTGGTCTGCTATGGGTCGCGGTGGTGCGGTGGTACAGGGACGCGGCGTGGTGGTGGTGTGGTCCAAGGTGGCGGCCTGGTACCCGTGTTGCTGGCGGCTGGCTTTGTGGTGCGGCGATGCGGTGGCGTGGAGATGCATTACAGCGTCGTGTCGGTGCAAGCCGACGATGTGGTGTCGACGGAGGGTGTTGGCAGCAAGCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.81

Weight (kDa)

11.46

Isoelectric Point (pI)

67.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018639)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0216911
rosa_multiflora Rmu_sc0001962.1_g000032
rosa_roxburghii Rroxscaffold_4G00310480 Rroxscaffold_4G00311460
rosa_rugosa Rorug02G0550200 Rorug03G0263200
rosa_samantha Rh1AG256000 Rh2BG061600 Rh2BG373300 Rh4BG201700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 420
AccII CGCG 2 cut(s) 263, 287
AciI CCGC 9 cut(s) 112, 154, 263, 271, 287, 316, 339, 356, 364
AclWI GGATC 3 cut(s) 14, 151, 210
AcoI YGGCCR 1 cut(s) 106
AfaI GTAC 2 cut(s) 278, 325
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 2 cut(s) 187, 319
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
AlwI GGATC 3 cut(s) 14, 151, 210
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 106, 317
ApeKI GCWGC 6 cut(s) 13, 77, 88, 151, 177, 436
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
Asp718I GGTACC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 123, 305
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 123, 305
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 1 cut(s) 323
BbvI GCAGC 5 cut(s) 25, 89, 100, 163, 189
BccI CCATC 2 cut(s) 32, 226
BciT130I CCWGG 2 cut(s) 189, 321
BfaI CTAG 2 cut(s) 147, 448
Bme1390I CCNGG 2 cut(s) 189, 321
Bme18I GGWCC 2 cut(s) 123, 305
BmgT120I GGNCC 2 cut(s) 123, 305
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 2 cut(s) 189, 321
BmsI GCATC 2 cut(s) 351, 367
BsaJI CCNNGG 2 cut(s) 23, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 108
BseBI CCWGG 2 cut(s) 189, 321
BseDI CCNNGG 2 cut(s) 23, 308
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 5 cut(s) 25, 89, 100, 163, 189
BseYI CCCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 2 cut(s) 263, 287
BshFI GGCC 2 cut(s) 108, 319
BshNI GGYRCC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 108, 319
Bsp143I GATC 5 cut(s) 19, 116, 143, 167, 202
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 9 cut(s) 112, 154, 263, 271, 287, 316, 339, 356, 364
BspANI GGCC 2 cut(s) 108, 319
BspCNI CTCAG 1 cut(s) 52
BspFNI CGCG 2 cut(s) 263, 287
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 3 cut(s) 14, 151, 210
BspT107I GGYRCC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 23, 308
BssMI GATC 5 cut(s) 19, 116, 143, 167, 202
BssT1I CCWWGG 2 cut(s) 23, 308
Bst2UI CCWGG 2 cut(s) 189, 321
BstC8I GCNNGC 8 cut(s) 30, 106, 110, 337, 344, 403, 441, 445
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 23
BstFNI CGCG 2 cut(s) 263, 287
BstKTI GATC 5 cut(s) 22, 119, 146, 170, 205
BstMBI GATC 5 cut(s) 19, 116, 143, 167, 202
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 2 cut(s) 189, 321
BstSCI CCNGG 2 cut(s) 187, 319
BstUI CGCG 2 cut(s) 263, 287
BstV1I GCAGC 5 cut(s) 25, 89, 100, 163, 189
BstX2I RGATCY 2 cut(s) 143, 202
BstYI RGATCY 2 cut(s) 143, 202
BsuRI GGCC 2 cut(s) 108, 319
BtgI CCRYGG 1 cut(s) 23
BtgZI GCGATG 2 cut(s) 195, 374
Cac8I GCNNGC 8 cut(s) 30, 106, 110, 337, 344, 403, 441, 445
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 123, 305
CseI GACGC 2 cut(s) 293, 377
Csp6I GTAC 2 cut(s) 277, 324
CviAII CATG 2 cut(s) 24, 173
CviQI GTAC 2 cut(s) 277, 324
DdeI CTNAG 1 cut(s) 60
DpnI GATC 5 cut(s) 21, 118, 145, 169, 204
DpnII GATC 5 cut(s) 19, 116, 143, 167, 202
EaeI YGGCCR 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 23, 308
Eco47I GGWCC 2 cut(s) 123, 305
EcoRII CCWGG 2 cut(s) 187, 319
EcoT14I CCWWGG 2 cut(s) 23, 308
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 2 cut(s) 23, 308
FaeI CATG 2 cut(s) 27, 176
FaiI YATR 4 cut(s) 25, 174, 217, 256
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 23, 172
FblI GTMKAC 1 cut(s) 420
FspBI CTAG 2 cut(s) 147, 448
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 2 cut(s) 108, 319
HapII CCGG 1 cut(s) 109
HgaI GACGC 2 cut(s) 293, 377
Hin1II CATG 2 cut(s) 27, 176
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 3 cut(s) 393, 411, 425
HpyAV CCTTC 2 cut(s) 67, 87
HpyCH4V TGCA 5 cut(s) 13, 88, 136, 380, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 27, 176
KpnI GGTACC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 108
KroNI GCCGGC 1 cut(s) 110
Kzo9I GATC 5 cut(s) 19, 116, 143, 167, 202
Lsp1109I GCAGC 5 cut(s) 25, 89, 100, 163, 189
LweI GCATC 2 cut(s) 351, 367
MaeI CTAG 2 cut(s) 147, 448
MalI GATC 5 cut(s) 21, 118, 145, 169, 204
MboI GATC 5 cut(s) 19, 116, 143, 167, 202
MflI RGATCY 2 cut(s) 143, 202
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 4 cut(s) 136, 187, 234, 419
Mph1103I ATGCAT 1 cut(s) 382
MroNI GCCGGC 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 2 cut(s) 189, 321
MvaI CCWGG 2 cut(s) 189, 321
MvnI CGCG 2 cut(s) 263, 287
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 23
NdeII GATC 5 cut(s) 19, 116, 143, 167, 202
NgoMIV GCCGGC 1 cut(s) 108
NlaIII CATG 2 cut(s) 27, 176
NlaIV GGNNCC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 382
PdiI GCCGGC 1 cut(s) 110
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 187, 319
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 2 cut(s) 187, 319
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 123, 305
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 143, 202
RsaI GTAC 2 cut(s) 278, 325
RsaNI GTAC 2 cut(s) 277, 324
SalI GTCGAC 1 cut(s) 419
Sau3AI GATC 5 cut(s) 19, 116, 143, 167, 202
Sau96I GGNCC 2 cut(s) 123, 305
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 189, 321
SetI ASST 4 cut(s) 128, 193, 314, 445
SfaNI GCATC 2 cut(s) 351, 367
SinI GGWCC 2 cut(s) 123, 305
SsiI CCGC 9 cut(s) 112, 154, 263, 271, 287, 316, 339, 356, 364
SspMI CTAG 2 cut(s) 147, 448
StyD4I CCNGG 2 cut(s) 187, 319
StyI CCWWGG 2 cut(s) 23, 308
TaqI TCGA 3 cut(s) 36, 166, 420
TauI GCSGC 6 cut(s) 115, 157, 290, 319, 342, 359
TseI GCWGC 6 cut(s) 13, 77, 88, 151, 177, 436
TspGWI ACGGA 1 cut(s) 438
VpaK11BI GGWCC 2 cut(s) 123, 305
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 2 cut(s) 147, 448
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.