Rh4BG201700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018639
Physical Location & Seq
Reverse (-)
34618787 .. 34619918
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG201700.1

Sequence Viewer

Length: 411 bp
ATGGGTTGTTGGCAGCGAGGTCCATGGATGGTTGTCGATGGGTCTTTCCCGCTGTGGGCTGGGTCGTGGGCGAAGGCAGCCAAAGTGCAGCGACAGGGTGCGGCTGGCCGGCGGCGATCTAGGACCTCTTTTCTGCAACAGGAATCTATGCAGCGGCTGGGCTTTCGATCTCATGGCAGCGATGAGCCAGGTAAGGGCTTGGATCTGTCTGGGATCTGCTTTTGTCTGTTGATGGTGTTGTGGGGTGGTCTCCTATGGGTCGCGGTGGTGTGGTGGTACAGGGATGCGGCGTGGGGGTGGTGTGGTCCAATGTGGCGGCCTGGTACCGGTGTTTCTGGCAGCTGGCTTTGTGGTGCGGCGATGCGGTGGCGTGGAGATGCGTTGCGGCGTCGTGACGGTGCAAGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.26

Weight (kDa)

10.99

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018639)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0216911
rosa_multiflora Rmu_sc0001962.1_g000032
rosa_roxburghii Rroxscaffold_4G00310480 Rroxscaffold_4G00311460
rosa_rugosa Rorug02G0550200 Rorug03G0263200
rosa_samantha Rh1AG256000 Rh2BG061600 Rh2BG373300 Rh4BG201700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AccII CGCG 1 cut(s) 263
AclWI GGATC 2 cut(s) 210, 221
AcoI YGGCCR 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 388
AfaI GTAC 2 cut(s) 278, 325
AfiI CCNNNNNNNGG 3 cut(s) 55, 194, 326
AgeI ACCGGT 1 cut(s) 326
AjnI CCWGG 2 cut(s) 187, 319
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 210, 221
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 106, 317
ApeKI GCWGC 6 cut(s) 13, 77, 88, 151, 177, 339
AsiGI ACCGGT 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 20, 123, 305
AvaII GGWCC 3 cut(s) 20, 123, 305
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BanI GGYRCC 1 cut(s) 323
BbvI GCAGC 6 cut(s) 25, 89, 100, 163, 189, 351
BccI CCATC 3 cut(s) 22, 32, 226
BciT130I CCWGG 2 cut(s) 189, 321
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 120
Bme1390I CCNGG 2 cut(s) 189, 321
Bme18I GGWCC 3 cut(s) 20, 123, 305
BmgT120I GGNCC 3 cut(s) 20, 123, 305
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 2 cut(s) 189, 321
BmsI GCATC 3 cut(s) 274, 351, 367
BsaHI GRCGYC 1 cut(s) 388
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 194, 326
Bse118I RCCGGY 2 cut(s) 108, 326
BseBI CCWGG 2 cut(s) 189, 321
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 33, 289
BseLI CCNNNNNNNGG 3 cut(s) 55, 194, 326
BseXI GCAGC 6 cut(s) 25, 89, 100, 163, 189, 351
BseYI CCCAGC 2 cut(s) 59, 157
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 2 cut(s) 108, 319
BshNI GGYRCC 1 cut(s) 323
BshTI ACCGGT 1 cut(s) 326
BsiSI CCGG 2 cut(s) 109, 327
BslI CCNNNNNNNGG 3 cut(s) 55, 194, 326
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 108, 319
Bso31I GGTCTC 1 cut(s) 254
Bsp143I GATC 4 cut(s) 116, 167, 202, 213
Bsp19I CCATGG 1 cut(s) 23
BspANI GGCC 2 cut(s) 108, 319
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 2 cut(s) 210, 221
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 2 cut(s) 108, 326
BssAI RCCGGY 2 cut(s) 108, 326
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 4 cut(s) 116, 167, 202, 213
BssNI GRCGYC 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 2 cut(s) 189, 321
Bst4CI ACNGT 1 cut(s) 398
BstACI GRCGYC 1 cut(s) 388
BstC8I GCNNGC 4 cut(s) 106, 110, 344, 403
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 33, 289
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 4 cut(s) 119, 170, 205, 216
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 4 cut(s) 116, 167, 202, 213
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 2 cut(s) 189, 321
BstSCI CCNGG 2 cut(s) 187, 319
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 6 cut(s) 25, 89, 100, 163, 189, 351
BstX2I RGATCY 2 cut(s) 202, 213
BstYI RGATCY 2 cut(s) 202, 213
BsuRI GGCC 2 cut(s) 108, 319
BtgI CCRYGG 1 cut(s) 23
BtgZI GCGATG 2 cut(s) 195, 374
BtsCI GGATG 2 cut(s) 33, 289
Cac8I GCNNGC 4 cut(s) 106, 110, 344, 403
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 2 cut(s) 108, 326
Cfr13I GGNCC 3 cut(s) 20, 123, 305
CseI GACGC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 277, 324
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 2 cut(s) 24, 173
CviQI GTAC 2 cut(s) 277, 324
DpnI GATC 4 cut(s) 118, 169, 204, 215
DpnII GATC 4 cut(s) 116, 167, 202, 213
EaeI YGGCCR 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 3 cut(s) 20, 123, 305
EcoO109I RGGNCCY 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 187, 319
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 27, 176
FaiI YATR 4 cut(s) 25, 149, 174, 256
FatI CATG 2 cut(s) 23, 172
FauI CCCGC 1 cut(s) 57
FokI GGATG 2 cut(s) 40, 296
FspBI CTAG 1 cut(s) 120
GsaI CCCAGC 2 cut(s) 63, 161
HaeIII GGCC 2 cut(s) 108, 319
HapII CCGG 2 cut(s) 109, 327
HgaI GACGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 388
Hin1II CATG 2 cut(s) 27, 176
HinfI GANTC 1 cut(s) 143
HpaII CCGG 2 cut(s) 109, 327
Hpy188III TCNNGA 1 cut(s) 392
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 4 cut(s) 88, 136, 151, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 388
Hsp92II CATG 2 cut(s) 27, 176
KpnI GGTACC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 108
KroNI GCCGGC 1 cut(s) 110
Kzo9I GATC 4 cut(s) 116, 167, 202, 213
Lsp1109I GCAGC 6 cut(s) 25, 89, 100, 163, 189, 351
LweI GCATC 3 cut(s) 274, 351, 367
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 392
MalI GATC 4 cut(s) 118, 169, 204, 215
MboI GATC 4 cut(s) 116, 167, 202, 213
MflI RGATCY 2 cut(s) 202, 213
MnlI CCTC 2 cut(s) 11, 136
MroNI GCCGGC 1 cut(s) 108
MspA1I CMGCKG 3 cut(s) 52, 154, 342
MspI CCGG 2 cut(s) 109, 327
MspR9I CCNGG 2 cut(s) 189, 321
MvaI CCWGG 2 cut(s) 189, 321
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 23
NdeII GATC 4 cut(s) 116, 167, 202, 213
NgoMIV GCCGGC 1 cut(s) 108
NlaIII CATG 2 cut(s) 27, 176
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 187, 319
PspFI CCCAGC 2 cut(s) 59, 157
PspGI CCWGG 2 cut(s) 187, 319
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 3 cut(s) 20, 123, 305
PspPPI RGGWCCY 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 202, 213
PvuII CAGCTG 1 cut(s) 342
RsaI GTAC 2 cut(s) 278, 325
RsaNI GTAC 2 cut(s) 277, 324
Sau3AI GATC 4 cut(s) 116, 167, 202, 213
Sau96I GGNCC 3 cut(s) 20, 123, 305
ScrFI CCNGG 2 cut(s) 189, 321
SetI ASST 4 cut(s) 22, 128, 193, 344
SfaNI GCATC 3 cut(s) 274, 351, 367
SinI GGWCC 3 cut(s) 20, 123, 305
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 187, 319
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 36, 166
TauI GCSGC 7 cut(s) 104, 115, 157, 290, 319, 359, 388
TfiI GAWTC 1 cut(s) 143
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 6 cut(s) 13, 77, 88, 151, 177, 339
Tsp45I GTSAC 1 cut(s) 392
VpaK11BI GGWCC 3 cut(s) 20, 123, 305
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.