Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018639

Physical Location & Seq

Genomic Coordinates Forward (+)

52410785 .. 52414300

Gene Structure 3516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG373300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTGGCTGTCGATGGGTCTTGCTGTGGGCTGGGTCGTGGGCGAAGGCAGCCAAAGTGCAGCGAAGGGGTGCGGCTGGCCGGCGGCGATCTCGGACCTCTTTTCTGCAACGGGGATCTATGCAGCAGCTGAGCTCTCAATTTCATGGCAGCGATGAGCCAGGTGAGGGCTTGGATCTGTCTGGGATCTGGTTTCATCTGTTGATGGTGTTGTGGGGTGGTCTGCTATGGGTCGCAATGGTGCAGCGGTACAGGGACGCGGCGTGGTCCAAGGTGGCGGCCTGTGCAAAGCATCCTCTAGTCCTCTGCACCGATGATTCTGGGGTCTTTTCTACCAGCCCTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACGAGAAATTCGTGCAAGTTTATATTTACAGATGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTTCACCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

161

Amino Acids

17.99

Weight (kDa)

9.63

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	98 - 155	1.1e-06	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018639)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0216911
rosa_multiflora	Rmu_sc0001962.1_g000032
rosa_roxburghii	Rroxscaffold_4G00310480 Rroxscaffold_4G00311460
rosa_rugosa	Rorug02G0550200 Rorug03G0263200
rosa_samantha	Rh1AG256000 Rh2BG061600 Rh2BG373300 Rh4BG201700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	260
AciI	CCGC	5 cut(s)	74, 85, 247, 260, 278
AclWI	GGATC	3 cut(s)	124, 183, 194
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	2 cut(s)	251, 353
AfiI	CCNNNNNNNGG	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	130, 135, 403
AluI	AGCT	3 cut(s)	130, 135, 403
Alw21I	GWGCWC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	124, 183, 194
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	79, 279
ApeKI	GCWGC	7 cut(s)	50, 61, 124, 127, 150, 244, 362
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	96, 267
AsuHPI	GGTGA	2 cut(s)	176, 468
AvaII	GGWCC	2 cut(s)	96, 267
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	7 cut(s)	62, 73, 136, 139, 162, 256, 349
BccI	CCATC	3 cut(s)	9, 199, 434
BciT130I	CCWGG	1 cut(s)	162
BfaI	CTAG	1 cut(s)	299
BlpI	GCTNAGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	96, 267
BmgT120I	GGNCC	2 cut(s)	96, 267
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	301
Bpu1102I	GCTNAGC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	122
BseXI	GCAGC	7 cut(s)	62, 73, 136, 139, 162, 256, 349
BseYI	CCCAGC	1 cut(s)	32
BsgI	GTGCAG	3 cut(s)	80, 263, 292
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	81, 281
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	81, 281
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	89, 116, 175, 186
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	5 cut(s)	74, 85, 247, 260, 278
BspANI	GGCC	2 cut(s)	81, 281
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	260
BspPI	GGATC	3 cut(s)	124, 183, 194
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	89, 116, 175, 186
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	7, 79, 83
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	4 cut(s)	92, 119, 178, 189
BstMBI	GATC	4 cut(s)	89, 116, 175, 186
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 284, 368
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	7 cut(s)	62, 73, 136, 139, 162, 256, 349
BstX2I	RGATCY	3 cut(s)	116, 175, 186
BstYI	RGATCY	3 cut(s)	116, 175, 186
BsuRI	GGCC	2 cut(s)	81, 281
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	7, 79, 83
CaiI	CAGNNNCTG	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	96, 267
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	250, 352
CviAII	CATG	1 cut(s)	146
CviQI	GTAC	2 cut(s)	250, 352
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	4 cut(s)	91, 118, 177, 188
DpnII	GATC	4 cut(s)	89, 116, 175, 186
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	96, 267
Eco53kI	GAGCTC	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	149
FaiI	YATR	4 cut(s)	122, 147, 229, 428
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	145
FokI	GGATG	1 cut(s)	279
FriOI	GRGCYC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	299
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	81, 281
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	176, 468
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	4 cut(s)	40, 60, 351, 378
HpyCH4V	TGCA	8 cut(s)	61, 109, 124, 244, 287, 309, 371, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 284, 368
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	4 cut(s)	89, 116, 175, 186
Lsp1109I	GCAGC	7 cut(s)	62, 73, 136, 139, 162, 256, 349
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	299
MalI	GATC	4 cut(s)	91, 118, 177, 188
MboI	GATC	4 cut(s)	89, 116, 175, 186
MboII	GAAGA	1 cut(s)	460
MflI	RGATCY	3 cut(s)	116, 175, 186
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	3 cut(s)	140, 412, 455
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	5 cut(s)	109, 160, 306, 314, 381
MroNI	GCCGGC	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	1 cut(s)	458
MspA1I	CMGCKG	2 cut(s)	130, 247
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	50, 284, 368
NaeI	GCCGGC	1 cut(s)	83
NdeII	GATC	4 cut(s)	89, 116, 175, 186
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PdiI	GCCGGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	96, 267
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	116, 175, 186
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	251, 353
RsaNI	GTAC	2 cut(s)	250, 352
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	458
Sau3AI	GATC	4 cut(s)	89, 116, 175, 186
Sau96I	GGNCC	2 cut(s)	96, 267
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	7 cut(s)	101, 132, 137, 166, 276, 360, 405
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	2 cut(s)	96, 267
Sse9I	AATT	3 cut(s)	140, 412, 455
SsiI	CCGC	5 cut(s)	74, 85, 247, 260, 278
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	270
TaqI	TCGA	1 cut(s)	13
TasI	AATT	3 cut(s)	140, 412, 455
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	4 cut(s)	77, 88, 263, 281
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TseI	GCWGC	7 cut(s)	50, 61, 124, 127, 150, 244, 362
TspDTI	ATGAA	2 cut(s)	134, 185
VpaK11BI	GGWCC	2 cut(s)	96, 267
XapI	RAATTY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.