Rorug03G0263200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018639
Physical Location & Seq
Forward (+)
25494646 .. 25495650
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0263200.1

Sequence Viewer

Length: 1005 bp
ATGTTGTTAAGGTTGATCAAGTTACTATTGGTCAAGCCAAAGGCATATTTGCCAGTCTGTATTGAAGTTGATCTCAGTAAGCCCCTGCGTCCTTTTGTTGAGGTGGAATTTGTTGCCTACCATGTTGTGTATGAAGGAATTTCAATGATTTGCTTCGAGTGTGGTTGCTTTGGTCACTCTAAGGATAAATGCCCCACCAAAATTGCTGGGTCAAATGCTAAACCTCAAGCTAATGAGCCTGTCACCAACTCTACTGATCAGGTTATGGTTTCTGTGGATAAAGCTGATTTACAACAGGATATGGACACCTCTCAAGCTCAACGTTCTATTATTAAGGAGGACATGGGACCATGGATGCTGATGAATTACAGAAATAAAAAGAAGACCAATGAAGGTGGAGGATCAAAGAAAAGTACCAATAAGGGTTCTAGGTTTGCTGTTTTGCAGGATGAAGATGTTATGCCTGCTACTGAACCTGAGACCATTGCTGAAAATACTACCAAGCTTTCAACTCCTCCAATCGTGAAATTGTGGACTAGTTTCCAGGATAAGAAGAAGAATTTCACCAAATCTAGCTCTGCCAAGGCTGGAGTAAGCTCAGTAACCAGTGACTCACGTCCGAGTGCCTCCACCTCAGGAATTATTAAAACTATGCCAAGAGTCCCAATGAAAGATGTGTCCAATGTTGACACCTGCAATGTTCCAAAGCCTGCTATGCAATATCAAAGGAAAACCAAAGGTACTATTTCTTCTACAACTAAACACCAGTCTCTTATTTTCAAAAAGCTCTCCTTTGAAAATGCTGATACTAATGTGTTTGGTAATGGAATTTCTGCTATATTTGGTCATTGCCCTCCTGAGGAGACCTCTATGTGTACTGATAAACAACAATCCAATAGCCATGCCTCGGATTGTTTTGTTGAAGAGACCTTTGCTGCTAATAGCATTTTGAATAGTGATGATAACCTGCCTTCCTCAACTGGGGATGGTGTGGTTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

36.54

Weight (kDa)

7.51

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018639)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0216911
rosa_multiflora Rmu_sc0001962.1_g000032
rosa_roxburghii Rroxscaffold_4G00310480 Rroxscaffold_4G00311460
rosa_rugosa Rorug02G0550200 Rorug03G0263200
rosa_samantha Rh1AG256000 Rh2BG061600 Rh2BG373300 Rh4BG201700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 701
Acc36I ACCTGC 2 cut(s) 701, 975
AclI AACGTT 1 cut(s) 322
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 4 cut(s) 107, 138, 559, 828
AfaI GTAC 3 cut(s) 415, 742, 877
AfiI CCNNNNNNNGG 3 cut(s) 859, 907, 981
AgsI TTSAA 7 cut(s) 65, 144, 510, 781, 797, 923, 952
AhlI ACTAGT 1 cut(s) 536
AjiI CACGTC 1 cut(s) 617
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 7 cut(s) 230, 284, 317, 505, 576, 597, 787
AluI AGCT 7 cut(s) 230, 284, 317, 505, 576, 597, 787
Alw26I GTCTC 4 cut(s) 473, 774, 857, 920
AlwI GGATC 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 935
ApoI RAATTY 4 cut(s) 107, 138, 559, 828
Asp700I GAANNNNTTC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 235, 556
AvaII GGWCC 1 cut(s) 347
AxyI CCTNAGG 2 cut(s) 634, 858
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 922
BccI CCATC 1 cut(s) 980
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 2 cut(s) 15, 256
BcoDI GTCTC 4 cut(s) 473, 774, 857, 920
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 3 cut(s) 429, 537, 573
BfuAI ACCTGC 2 cut(s) 701, 975
BisI GCNGC 1 cut(s) 936
BlsI GCNGC 1 cut(s) 937
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 347
BmgBI CACGTC 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 545
BmrI ACTGGG 1 cut(s) 990
BmsI GCATC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 990
BoxI GACNNNNGTC 1 cut(s) 615
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 851, 883
BpmI CTGGAG 1 cut(s) 609
BpuEI CTTGAG 2 cut(s) 210, 297
BsaI GGTCTC 3 cut(s) 473, 857, 920
BsaJI CCNNGG 3 cut(s) 350, 582, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 859, 907, 981
Bse1I ACTGG 4 cut(s) 53, 606, 766, 985
Bse21I CCTNAGG 2 cut(s) 634, 858
Bse3DI GCAATG 3 cut(s) 483, 703, 847
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 3 cut(s) 350, 582, 906
BseGI GGATG 3 cut(s) 360, 454, 991
BseLI CCNNNNNNNGG 3 cut(s) 859, 907, 981
BseMI GCAATG 3 cut(s) 483, 703, 847
BseMII CTCAG 5 cut(s) 88, 468, 612, 648, 849
BseNI ACTGG 4 cut(s) 53, 606, 766, 985
BseRI GAGGAG 2 cut(s) 504, 875
BseXI GCAGC 1 cut(s) 922
BseYI CCCAGC 1 cut(s) 206
BslFI GGGAC 2 cut(s) 360, 647
BslI CCNNNNNNNGG 3 cut(s) 859, 907, 981
BsmAI GTCTC 4 cut(s) 473, 774, 857, 920
BsmFI GGGAC 2 cut(s) 360, 647
Bso31I GGTCTC 3 cut(s) 473, 857, 920
Bsp143I GATC 4 cut(s) 15, 70, 256, 401
Bsp19I CCATGG 1 cut(s) 350
BspCNI CTCAG 5 cut(s) 87, 469, 611, 647, 850
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 2 cut(s) 701, 975
BspPI GGATC 1 cut(s) 409
BspTNI GGTCTC 3 cut(s) 473, 857, 920
BsrDI GCAATG 3 cut(s) 483, 703, 847
BsrI ACTGG 4 cut(s) 53, 606, 766, 985
BssECI CCNNGG 3 cut(s) 350, 582, 906
BssMI GATC 4 cut(s) 15, 70, 256, 401
BssT1I CCWWGG 2 cut(s) 350, 582
Bst2UI CCWGG 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 918
BstC8I GCNNGC 2 cut(s) 465, 711
BstDEI CTNAG 6 cut(s) 74, 180, 477, 598, 634, 858
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 3 cut(s) 360, 454, 991
BstKTI GATC 4 cut(s) 18, 73, 259, 404
BstMAI GTCTC 4 cut(s) 473, 774, 857, 920
BstMBI GATC 4 cut(s) 15, 70, 256, 401
BstMWI GCNNNNNNNGC 1 cut(s) 715
BstNI CCWGG 1 cut(s) 545
BstPAI GACNNNNGTC 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 922
BstV2I GAAGAC 1 cut(s) 389
Bsu36I CCTNAGG 2 cut(s) 634, 858
BtgI CCRYGG 1 cut(s) 350
BtrI CACGTC 1 cut(s) 617
BtsCI GGATG 3 cut(s) 360, 454, 991
BtsIMutI CAGTG 1 cut(s) 613
BveI ACCTGC 2 cut(s) 701, 975
Cac8I GCNNGC 2 cut(s) 465, 711
Cfr13I GGNCC 1 cut(s) 347
CseI GACGC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 414, 741, 876
CspCI CAANNNNNGTGG 4 cut(s) 184, 219, 376, 411
CviAII CATG 4 cut(s) 122, 343, 351, 902
CviQI GTAC 3 cut(s) 414, 741, 876
DdeI CTNAG 6 cut(s) 74, 180, 477, 598, 634, 858
DpnI GATC 4 cut(s) 17, 72, 258, 403
DpnII GATC 4 cut(s) 15, 70, 256, 401
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
Eco130I CCWWGG 2 cut(s) 350, 582
Eco31I GGTCTC 3 cut(s) 473, 857, 920
Eco47I GGWCC 1 cut(s) 347
Eco81I CCTNAGG 2 cut(s) 634, 858
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 350, 582
ErhI CCWWGG 2 cut(s) 350, 582
FaeI CATG 4 cut(s) 125, 346, 354, 905
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 2 cut(s) 360, 647
FatI CATG 4 cut(s) 121, 342, 350, 901
FbaI TGATCA 2 cut(s) 15, 256
Fnu4HI GCNGC 1 cut(s) 936
FokI GGATG 3 cut(s) 367, 461, 998
Fsp4HI GCNGC 1 cut(s) 936
FspBI CTAG 3 cut(s) 429, 537, 573
GluI GCNGC 1 cut(s) 936
GsaI CCCAGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 609
HgaI GACGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 125, 346, 354, 905
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 2 cut(s) 611, 660
HphI GGTGA 2 cut(s) 235, 556
Hpy166II GTNNAC 3 cut(s) 534, 688, 876
Hpy188I TCNGA 2 cut(s) 621, 910
Hpy188III TCNNGA 3 cut(s) 523, 636, 857
Hpy8I GTNNAC 3 cut(s) 534, 688, 876
HpyAV CCTTC 3 cut(s) 128, 386, 981
HpyCH4IV ACGT 2 cut(s) 322, 616
HpyCH4V TGCA 3 cut(s) 445, 696, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 715
HpyF3I CTNAG 6 cut(s) 74, 180, 477, 598, 634, 858
HpySE526I ACGT 2 cut(s) 322, 616
Hsp92II CATG 4 cut(s) 125, 346, 354, 905
Ksp22I TGATCA 2 cut(s) 15, 256
Kzo9I GATC 4 cut(s) 15, 70, 256, 401
Lsp1109I GCAGC 1 cut(s) 922
LweI GCATC 1 cut(s) 345
MaeI CTAG 3 cut(s) 429, 537, 573
MaeII ACGT 2 cut(s) 322, 616
MaeIII GTNAC 5 cut(s) 21, 173, 241, 601, 608
MalI GATC 4 cut(s) 17, 72, 258, 403
MboI GATC 4 cut(s) 15, 70, 256, 401
MboII GAAGA 6 cut(s) 394, 464, 565, 568, 741, 935
MluCI AATT 8 cut(s) 107, 138, 201, 364, 527, 559, 639, 828
MlyI GAGTC 2 cut(s) 605, 669
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 4 cut(s) 8, 333, 645, 1003
MspR9I CCNGG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 715
NcoI CCATGG 1 cut(s) 350
NdeII GATC 4 cut(s) 15, 70, 256, 401
NlaIII CATG 4 cut(s) 125, 346, 354, 905
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 3 cut(s) 173, 241, 608
PaqCI CACCTGC 1 cut(s) 701
PdmI GAANNNNTTC 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 1 cut(s) 937
PleI GAGTC 2 cut(s) 605, 668
PpsI GAGTC 2 cut(s) 605, 668
PshAI GACNNNNGTC 1 cut(s) 615
Psp1406I AACGTT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 347
RsaI GTAC 3 cut(s) 415, 742, 877
RsaNI GTAC 3 cut(s) 414, 741, 876
SaqAI TTAA 4 cut(s) 8, 333, 645, 1003
SatI GCNGC 1 cut(s) 936
Sau3AI GATC 4 cut(s) 15, 70, 256, 401
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 2 cut(s) 605, 669
ScrFI CCNGG 1 cut(s) 545
SfaNI GCATC 1 cut(s) 345
SinI GGWCC 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 225, 312
SmoI CTYRAG 2 cut(s) 225, 312
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 8 cut(s) 107, 138, 201, 364, 527, 559, 639, 828
SspMI CTAG 3 cut(s) 429, 537, 573
StyD4I CCNGG 1 cut(s) 543
StyI CCWWGG 2 cut(s) 350, 582
TaiI ACGT 2 cut(s) 325, 619
TaqI TCGA 1 cut(s) 156
TasI AATT 8 cut(s) 107, 138, 201, 364, 527, 559, 639, 828
TatI WGTACW 1 cut(s) 875
Tru1I TTAA 4 cut(s) 8, 333, 645, 1003
Tru9I TTAA 4 cut(s) 8, 333, 645, 1003
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 3 cut(s) 173, 241, 608
TseI GCWGC 1 cut(s) 935
Tsp45I GTSAC 3 cut(s) 173, 241, 608
TspDTI ATGAA 5 cut(s) 147, 377, 405, 465, 683
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 4 cut(s) 107, 138, 559, 828
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 3 cut(s) 429, 537, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.