Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018209

Physical Location & Seq

Genomic Coordinates Forward (+)

35940169 .. 35945787

Gene Structure 5619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGGGTCTGAGTTGGAAGAAAACGCGACGTCGTTTAAGAGTTTGGGGCTATGCGATAAACTGGTGAAGGCCGTTGGTGAACTGCAATGGAAAGCCCCTACCCCTATTCAAGCAGAGACGATACCTCACGCCCTCGCAGGCAAACACTTGATCGCACTTGCCCAAACGGGTTCGGGTAAAACCGGAGCCTTTGCTCTTCCGATACTGCAAGCTCTCATGGATTCTCCTCAAAAAGCCTTTTTTGCTTTGGTTCTCTCCCCAACAAGGGAGCTTGCTGTTCAGATCAGAGACCAGTTTGAAGCCCTCGGCGTCTCCATTGGTGCCAAGTCTGCTGTGCTTATTGGAGGACTGAACATGGTGGAAGAATCTAAGGTTCTTGCAAGGCGGCCACACATCATTGTTGCGACACCCGGACGCCTCCTTCATCATCTGCGTGACACAAAGGGATTTTCTCTTCGCACAGTGAAATATCTGGTTTTAGACGAGGCAGACAGGCTGCTTGGTGATGAATTTCAAAAATCGACAGATGAAATTCTGAAATCCCTCCCTCGTGGTGGTGAACGGATCACATATTTATTTTCTGCTACGATGACCAAAAAGGTCAAGAAGGTTGAAAGAGCTTGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCCAAGTACTCTACGGTTGACACACTAAAGCAGCATGTATTGATGGCGCCGTTCAAGCACAAGGATTGCTATCTCGTATATATTCTTACTAAGAAGTGTCAGTGCACAACAATGGTTTTTACTGAACAATGCGCCACAGCACCCTTTTTGGCTTATACACTTCGAAATCTTGGAATTAGGGCCATCCCTCTTCATGGTGATATGAGCCAGCAAAAAAGACTTGGAGCCTTAAACATGTTCAAATCAGGACAGTGTAATGTACTTGTCTGCACTGATGTGGCAAGTAGAGGATTGGATATTCCATCGGTGGATATGGTTATTAATTATGATATTCCCAAGAACACTAAGAATTACATCCATCGAGTAGGAAGAACTGCTCGTGCTGGGCGATCCGGGGTTGCAATCACTTTCGTGGGCAGTATTCTTGACTTACCAGGGTATTTCCAGATAGAATCGCTTATTGGCCATAAGTTACCTCTATTTCCTGCTCCATCTGAAGAAGCCTTACAATTTCTAGAAAGTGTCAGAGAGGCTAGAAGATTGGCCACCTCGAAAATGAAAGAAAGTGGAGGCAAGAAGAGAAAGTGGGGAGGAAACGATGATGAGGAGGATATTGTAAAGTATTTAAGTAACCAGGCTGGAACGTCCAAGAAGATGTTCAACAAAAGGTTTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

444

Amino Acids

49.08

Weight (kDa)

9.61

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	34 - 204	2e-45	DEAD/DEAH box helicase
ResIII	PF04851	48 - 183	1.2e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	242 - 347	1.3e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018209)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218021
rosa_laevigata	RLG00000002422
rosa_multiflora	Rmu_sc0000870.1_g000002 Rmu_sc0008242.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241500
rosa_rugosa	Rorug07G0173000
rosa_samantha	Rh7AG315300 Rh7CG332700 Rh7DG313700
rosa_wichuraiana	Rw7G026640 Rw7G026720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	32
AccB1I	GGYRCC	2 cut(s)	320, 700
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	572, 1038
AcoI	YGGCCR	3 cut(s)	386, 1117, 1197
AcsI	RAATTY	2 cut(s)	509, 531
AcuI	CTGAAG	1 cut(s)	1170
AcyI	GRCGYC	4 cut(s)	29, 309, 415, 701
AfaI	GTAC	2 cut(s)	662, 915
AfiI	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 848
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	8 cut(s)	110, 299, 515, 614, 647, 709, 895, 1315
AjnI	CCWGG	2 cut(s)	1087, 1287
AjuI	GAANNNNNNNTTGG	4 cut(s)	1098, 1130, 1295, 1327
AleI	CACNNNNGTG	2 cut(s)	929, 1064
AluBI	AGCT	3 cut(s)	212, 271, 620
AluI	AGCT	3 cut(s)	212, 271, 620
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	3 cut(s)	110, 282, 316
Alw44I	GTGCAC	1 cut(s)	757
AlwI	GGATC	2 cut(s)	572, 1038
AoxI	GGCC	5 cut(s)	69, 386, 834, 1117, 1197
ApaLI	GTGCAC	1 cut(s)	757
ApeKI	GCWGC	2 cut(s)	496, 685
ApoI	RAATTY	2 cut(s)	509, 531
AseI	ATTAAT	1 cut(s)	975
Asp700I	GAANNNNTTC	1 cut(s)	1310
AspLEI	GCGC	2 cut(s)	703, 788
AspS9I	GGNCC	1 cut(s)	834
AsuC2I	CCSGG	2 cut(s)	411, 1048
AsuHPI	GGTGA	5 cut(s)	76, 89, 515, 569, 863
AsuII	TTCGAA	1 cut(s)	817
BaeGI	GKGCMC	1 cut(s)	761
BalI	TGGCCA	2 cut(s)	1119, 1199
BanI	GGYRCC	2 cut(s)	320, 700
BarI	GAAGNNNNNNTAC	2 cut(s)	1143, 1175
BauI	CACGAG	2 cut(s)	549, 1032
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	483, 697
BccI	CCATC	5 cut(s)	691, 845, 964, 1020, 1153
BceAI	ACGGC	2 cut(s)	56, 688
BciT130I	CCWGG	2 cut(s)	1089, 1289
BcnI	CCSGG	2 cut(s)	411, 1048
BcoDI	GTCTC	3 cut(s)	110, 282, 316
BfaI	CTAG	2 cut(s)	1169, 1188
BfoI	RGCGCY	1 cut(s)	704
BisI	GCNGC	3 cut(s)	386, 497, 686
BlsI	GCNGC	3 cut(s)	387, 498, 687
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	4 cut(s)	411, 1048, 1089, 1289
BmgT120I	GGNCC	1 cut(s)	834
BmiI	GGNNCC	5 cut(s)	187, 322, 632, 702, 880
BmrFI	CCNGG	4 cut(s)	411, 1048, 1089, 1289
BmsI	GCATC	1 cut(s)	662
Bpu14I	TTCGAA	1 cut(s)	817
BpuMI	CCSGG	2 cut(s)	411, 1048
BsaBI	GATNNNNATC	1 cut(s)	723
BsaHI	GRCGYC	4 cut(s)	29, 309, 415, 701
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	304, 1047, 1088
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 848
Bse1I	ACTGG	2 cut(s)	66, 292
Bse3DI	GCAATG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	1089, 1289
BseDI	CCNNGG	3 cut(s)	304, 1047, 1088
BseGI	GGATG	3 cut(s)	653, 837, 1008
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 848
BseMI	GCAATG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	66, 292
BseRI	GAGGAG	2 cut(s)	216, 1274
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	2 cut(s)	483, 697
BseYI	CCCAGC	1 cut(s)	1037
BsgI	GTGCAG	1 cut(s)	907
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	5 cut(s)	71, 388, 836, 1119, 1199
BshNI	GGYRCC	2 cut(s)	320, 700
BsiHKAI	GWGCWC	1 cut(s)	761
BsiSI	CCGG	3 cut(s)	183, 411, 1047
BslI	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 848
BsmAI	GTCTC	3 cut(s)	110, 282, 316
BsmBI	CGTCTC	2 cut(s)	110, 316
BsnI	GGCC	5 cut(s)	71, 388, 836, 1119, 1199
Bso31I	GGTCTC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	4 cut(s)	150, 282, 564, 1043
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	5 cut(s)	71, 388, 836, 1119, 1199
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	5 cut(s)	187, 322, 632, 702, 880
BspPI	GGATC	2 cut(s)	572, 1038
BspQI	GCTCTTC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	817
BspT107I	GGYRCC	2 cut(s)	320, 700
BspTNI	GGTCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	66, 292
BssECI	CCNNGG	3 cut(s)	304, 1047, 1088
BssMI	GATC	4 cut(s)	150, 282, 564, 1043
BssNI	GRCGYC	4 cut(s)	29, 309, 415, 701
BssSI	CACGAG	2 cut(s)	549, 1032
Bst2BI	CACGAG	2 cut(s)	549, 1032
Bst2UI	CCWGG	2 cut(s)	1089, 1289
Bst4CI	ACNGT	3 cut(s)	463, 670, 906
Bst6I	CTCTTC	4 cut(s)	201, 459, 849, 1226
BstACI	GRCGYC	4 cut(s)	29, 309, 415, 701
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	4 cut(s)	139, 210, 273, 863
BstDEI	CTNAG	5 cut(s)	9, 369, 626, 744, 999
BstF5I	GGATG	3 cut(s)	653, 837, 1008
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	2 cut(s)	703, 788
BstKTI	GATC	4 cut(s)	153, 285, 567, 1046
BstMAI	GTCTC	3 cut(s)	110, 282, 316
BstMBI	GATC	4 cut(s)	150, 282, 564, 1043
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 329, 709
BstNI	CCWGG	2 cut(s)	1089, 1289
BstNSI	RCATGY	2 cut(s)	692, 892
BstSCI	CCNGG	4 cut(s)	409, 1046, 1087, 1287
BstSLI	GKGCMC	1 cut(s)	761
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	483, 697
BsuRI	GGCC	5 cut(s)	71, 388, 836, 1119, 1199
BtsCI	GGATG	3 cut(s)	653, 837, 1008
BtsIMutI	CAGTG	4 cut(s)	468, 761, 911, 924
Cac8I	GCNNGC	4 cut(s)	139, 210, 273, 863
CfoI	GCGC	2 cut(s)	703, 788
Cfr13I	GGNCC	1 cut(s)	834
CseI	GACGC	2 cut(s)	298, 423
Csp6I	GTAC	2 cut(s)	661, 914
CviAII	CATG	5 cut(s)	217, 355, 689, 848, 889
CviQI	GTAC	2 cut(s)	661, 914
DdeI	CTNAG	5 cut(s)	9, 369, 626, 744, 999
DinI	GGCGCC	1 cut(s)	702
DpnI	GATC	4 cut(s)	152, 284, 566, 1045
DpnII	GATC	4 cut(s)	150, 282, 564, 1043
EaeI	YGGCCR	3 cut(s)	386, 1117, 1197
Eam1104I	CTCTTC	4 cut(s)	201, 459, 849, 1226
EarI	CTCTTC	4 cut(s)	201, 459, 849, 1226
Eco31I	GGTCTC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	1170
EcoRII	CCWGG	2 cut(s)	1087, 1287
EgeI	GGCGCC	1 cut(s)	702
EheI	GGCGCC	1 cut(s)	702
Esp3I	CGTCTC	2 cut(s)	110, 316
FaeI	CATG	5 cut(s)	220, 358, 692, 851, 892
FatI	CATG	5 cut(s)	216, 354, 688, 847, 888
Fnu4HI	GCNGC	3 cut(s)	386, 497, 686
FokI	GGATG	3 cut(s)	640, 824, 995
Fsp4HI	GCNGC	3 cut(s)	386, 497, 686
FspBI	CTAG	2 cut(s)	1169, 1188
GlaI	GCGC	2 cut(s)	702, 787
GluI	GCNGC	3 cut(s)	386, 497, 686
GsaI	CCCAGC	1 cut(s)	1041
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	5 cut(s)	71, 388, 836, 1119, 1199
HapII	CCGG	3 cut(s)	183, 411, 1047
HgaI	GACGC	2 cut(s)	298, 423
HhaI	GCGC	2 cut(s)	703, 788
Hin1I	GRCGYC	4 cut(s)	29, 309, 415, 701
Hin1II	CATG	5 cut(s)	220, 358, 692, 851, 892
Hin6I	GCGC	2 cut(s)	701, 786
HinP1I	GCGC	2 cut(s)	701, 786
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	3 cut(s)	221, 365, 1106
HpaII	CCGG	3 cut(s)	183, 411, 1047
HphI	GGTGA	5 cut(s)	76, 89, 515, 569, 863
Hpy166II	GTNNAC	4 cut(s)	80, 560, 673, 759
Hpy188I	TCNGA	7 cut(s)	10, 201, 282, 287, 537, 1150, 1181
Hpy188III	TCNNGA	5 cut(s)	604, 900, 1079, 1099, 1169
Hpy8I	GTNNAC	4 cut(s)	80, 560, 673, 759
Hpy99I	CGWCG	2 cut(s)	31, 34
HpyAV	CCTTC	3 cut(s)	61, 431, 601
HpyCH4III	ACNGT	3 cut(s)	463, 670, 906
HpyCH4IV	ACGT	2 cut(s)	29, 1298
HpyCH4V	TGCA	6 cut(s)	85, 208, 380, 759, 924, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 329, 709
HpyF3I	CTNAG	5 cut(s)	9, 369, 626, 744, 999
HpySE526I	ACGT	2 cut(s)	29, 1298
Hsp92I	GRCGYC	4 cut(s)	29, 309, 415, 701
Hsp92II	CATG	5 cut(s)	220, 358, 692, 851, 892
HspAI	GCGC	2 cut(s)	701, 786
KasI	GGCGCC	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	150, 282, 564, 1043
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	4 cut(s)	185, 268, 878, 1147
Lsp1109I	GCAGC	2 cut(s)	483, 697
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	2 cut(s)	1169, 1188
MaeII	ACGT	2 cut(s)	29, 1298
MaeIII	GTNAC	3 cut(s)	434, 1125, 1283
MalI	GATC	4 cut(s)	152, 284, 566, 1045
MboI	GATC	4 cut(s)	150, 282, 564, 1043
MhlI	GDGCHC	1 cut(s)	761
MlsI	TGGCCA	2 cut(s)	1119, 1199
MluCI	AATT	6 cut(s)	509, 531, 828, 976, 1003, 1163
MluNI	TGGCCA	2 cut(s)	1119, 1199
Mly113I	GGCGCC	1 cut(s)	701
Mox20I	TGGCCA	2 cut(s)	1119, 1199
MroXI	GAANNNNTTC	1 cut(s)	1310
MscI	TGGCCA	2 cut(s)	1119, 1199
MseI	TTAA	5 cut(s)	36, 884, 975, 1280, 1326
MslI	CAYNNNNRTG	4 cut(s)	432, 764, 929, 1064
Msp20I	TGGCCA	2 cut(s)	1119, 1199
MspI	CCGG	3 cut(s)	183, 411, 1047
MspR9I	CCNGG	4 cut(s)	411, 1048, 1089, 1289
MvaI	CCWGG	2 cut(s)	1089, 1289
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	242, 329, 709
NarI	GGCGCC	1 cut(s)	701
NciI	CCSGG	2 cut(s)	411, 1048
NdeII	GATC	4 cut(s)	150, 282, 564, 1043
NlaIII	CATG	5 cut(s)	220, 358, 692, 851, 892
NlaIV	GGNNCC	5 cut(s)	187, 322, 632, 702, 880
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	2 cut(s)	692, 892
NspV	TTCGAA	1 cut(s)	817
OliI	CACNNNNGTG	2 cut(s)	929, 1064
PciI	ACATGT	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	1039
PdmI	GAANNNNTTC	1 cut(s)	1310
PfeI	GAWTC	3 cut(s)	221, 365, 1106
PkrI	GCNGC	3 cut(s)	387, 498, 687
PluTI	GGCGCC	1 cut(s)	704
PscI	ACATGT	1 cut(s)	888
PshBI	ATTAAT	1 cut(s)	975
Psp6I	CCWGG	2 cut(s)	1087, 1287
PspFI	CCCAGC	1 cut(s)	1037
PspGI	CCWGG	2 cut(s)	1087, 1287
PspN4I	GGNNCC	5 cut(s)	187, 322, 632, 702, 880
PspPI	GGNCC	1 cut(s)	834
RsaI	GTAC	2 cut(s)	662, 915
RsaNI	GTAC	2 cut(s)	661, 914
RseI	CAYNNNNRTG	4 cut(s)	432, 764, 929, 1064
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	5 cut(s)	36, 884, 975, 1280, 1326
SatI	GCNGC	3 cut(s)	386, 497, 686
Sau3AI	GATC	4 cut(s)	150, 282, 564, 1043
Sau96I	GGNCC	1 cut(s)	834
ScaI	AGTACT	1 cut(s)	662
ScrFI	CCNGG	4 cut(s)	411, 1048, 1089, 1289
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	1 cut(s)	662
SfoI	GGCGCC	1 cut(s)	702
SfuI	TTCGAA	1 cut(s)	817
SmiMI	CAYNNNNRTG	4 cut(s)	432, 764, 929, 1064
Sse9I	AATT	6 cut(s)	509, 531, 828, 976, 1003, 1163
SsiI	CCGC	1 cut(s)	385
SspDI	GGCGCC	1 cut(s)	700
SspMI	CTAG	2 cut(s)	1169, 1188
StyD4I	CCNGG	4 cut(s)	409, 1046, 1087, 1287
TaaI	ACNGT	3 cut(s)	463, 670, 906
TaiI	ACGT	2 cut(s)	32, 1301
TaqI	TCGA	4 cut(s)	521, 817, 1015, 1205
TasI	AATT	6 cut(s)	509, 531, 828, 976, 1003, 1163
TatI	WGTACW	2 cut(s)	660, 913
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	221, 365, 1106
Tru1I	TTAA	5 cut(s)	36, 884, 975, 1280, 1326
Tru9I	TTAA	5 cut(s)	36, 884, 975, 1280, 1326
TscAI	CASTG	4 cut(s)	468, 761, 911, 931
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	2 cut(s)	496, 685
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	5 cut(s)	413, 522, 543, 836, 1226
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	4 cut(s)	468, 761, 911, 931
VneI	GTGCAC	1 cut(s)	757
VspI	ATTAAT	1 cut(s)	975
XapI	RAATTY	2 cut(s)	509, 531
XbaI	TCTAGA	1 cut(s)	1168
XceI	RCATGY	2 cut(s)	692, 892
XmnI	GAANNNNTTC	1 cut(s)	1310
XspI	CTAG	2 cut(s)	1169, 1188
ZraI	GACGTC	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.