Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018209

Physical Location & Seq

Genomic Coordinates Forward (+)

36829615 .. 36834820

Gene Structure 5206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG313700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGGTCTGAGTTGGAAGAAAGCACGACGTCGTTTAAGAGTTTGGGGCTGTGCGATAAACTGGTGAAGGCCGTTGGTGAACTGCAATGGAAAGCCCCTACCCCTATTCAAGCGGAGACGATACCTCACGCCCTGGCAGGCAAACACTTGATCGCACTTGCCCAAACGGGTTCGGGTAAAACCGGAGCCTTTGCTCTTCCGATACTGCAAGCTCTAATGGATTCTCCTCAAAAAGCCTTTTTTGCTTTGGTTCTCTCCCCAACTAGGGAGCTTGCTGTTCAGATCAGAGACCAGTTTGAAGCCCTCGGCGTCTCCATTGGTGCCAAGTCTGCTGTGCTTATTGGAGGACTGAACATGGTGGAAGAATCCAAGGTTCTTGCAAGGCGGCCACACATCATTGTTGCGACACCCGGACGCCTCCTTCATCATCTGCGTGACACAAAGGGATTTTCTCTTCGCACAGTGAAATATCTGGTTTTAGACGAGGCAGACAGGCTGCTTGGTGATGAATTTCAAAAATCGACAGACGAAATTCTGAAATCCCTCCCTCGTGGTGGTGAACGGATCACATATTTATTTTCTGCTACGATGACCAAAAAGATTGAAGTAGCATCCAAGTACTCTACGGTTGACACACTAAAGCAGCATGTATTGATGGCGCCGTTCAAGCACAAGGATTGCTATCTCGTATATATTCTTACTAAGAAGTGTCAGTGCACAACAATGGTTTTTACTGAACAATGCGCCACAGCACCCTTTTTGGCTTATACACTTCGAAATCTTGGAATTAGGGCCATCCCTCTTCATGGTGATATGAGCCAGCAAAAAAGACTTGGAGCCTTAAACATGTTCAAATCAGGACAGTGTAATGTACTTGTCTGCACTGATGTGGCGAGTAGAGGATTGGATATTCCATCGGTGGATATGGTTATTAATTATGATATTCCCAAGAACACTAAGAATTACATCCATCGAGTAGGAAGAACTGCTCGTGCTGGGCGATCCGGGGTTGCAATCACTTTCGTGGGCAGTATTCTTGACTTACCAGGGTATTCCCAGATAGAATCGCTTATTGGCAATAAGTTACCACTATTTCCTGCTCCATCTGAAGAAGCCTTACAATTTCTAGAAAGTGTCAGAGAGGCTAGAAGATTGGCCACCTCGAAAATGAAAGAAAGTGGAGGCAAGAAGAGAAAGTGGGGAGGAAATGATGATGAGGAGGATATTGTAAAGTATTTAAGTAACCAGGCTGGCACGTCCAAGAAGATGTTCAACAAAAGGTTTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

430

Amino Acids

47.37

Weight (kDa)

9.51

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	34 - 202	6.2e-45	DEAD/DEAH box helicase
ResIII	PF04851	48 - 183	1.1e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	228 - 333	1.2e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018209)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218021
rosa_laevigata	RLG00000002422
rosa_multiflora	Rmu_sc0000870.1_g000002 Rmu_sc0008242.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241500
rosa_rugosa	Rorug07G0173000
rosa_samantha	Rh7AG315300 Rh7CG332700 Rh7DG313700
rosa_wichuraiana	Rw7G026640 Rw7G026720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	32
AccB1I	GGYRCC	2 cut(s)	320, 658
AciI	CCGC	2 cut(s)	113, 385
AclWI	GGATC	2 cut(s)	572, 996
AcoI	YGGCCR	2 cut(s)	386, 1155
AcsI	RAATTY	2 cut(s)	509, 531
AcuI	CTGAAG	1 cut(s)	1128
AcyI	GRCGYC	4 cut(s)	29, 309, 415, 659
AfaI	GTAC	2 cut(s)	620, 873
AfiI	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 806
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	7 cut(s)	110, 299, 515, 605, 667, 853, 1273
AjiI	CACGTC	1 cut(s)	1257
AjnI	CCWGG	3 cut(s)	132, 1045, 1245
AjuI	GAANNNNNNNTTGG	4 cut(s)	1056, 1088, 1253, 1285
AleI	CACNNNNGTG	2 cut(s)	887, 1022
AluBI	AGCT	2 cut(s)	212, 271
AluI	AGCT	2 cut(s)	212, 271
Alw21I	GWGCWC	1 cut(s)	719
Alw26I	GTCTC	3 cut(s)	110, 282, 316
Alw44I	GTGCAC	1 cut(s)	715
AlwI	GGATC	2 cut(s)	572, 996
AoxI	GGCC	4 cut(s)	69, 386, 792, 1155
ApaLI	GTGCAC	1 cut(s)	715
ApeKI	GCWGC	2 cut(s)	496, 643
ApoI	RAATTY	2 cut(s)	509, 531
AseI	ATTAAT	1 cut(s)	933
Asp700I	GAANNNNTTC	1 cut(s)	1268
AspLEI	GCGC	2 cut(s)	661, 746
AspS9I	GGNCC	1 cut(s)	792
AsuC2I	CCSGG	2 cut(s)	411, 1006
AsuHPI	GGTGA	5 cut(s)	76, 89, 515, 569, 821
AsuII	TTCGAA	1 cut(s)	775
BaeGI	GKGCMC	1 cut(s)	719
BalI	TGGCCA	1 cut(s)	1157
BanI	GGYRCC	2 cut(s)	320, 658
BarI	GAAGNNNNNNTAC	2 cut(s)	1101, 1133
BauI	CACGAG	2 cut(s)	549, 990
Bbv12I	GWGCWC	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	483, 655
BccI	CCATC	5 cut(s)	649, 803, 922, 978, 1111
BceAI	ACGGC	2 cut(s)	56, 646
BciT130I	CCWGG	3 cut(s)	134, 1047, 1247
BcnI	CCSGG	2 cut(s)	411, 1006
BcoDI	GTCTC	3 cut(s)	110, 282, 316
BfaI	CTAG	3 cut(s)	264, 1127, 1146
BfoI	RGCGCY	1 cut(s)	662
BisI	GCNGC	3 cut(s)	386, 497, 644
BlsI	GCNGC	3 cut(s)	387, 498, 645
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	5 cut(s)	134, 411, 1006, 1047, 1247
BmgBI	CACGTC	1 cut(s)	1257
BmgT120I	GGNCC	1 cut(s)	792
BmiI	GGNNCC	4 cut(s)	187, 322, 660, 838
BmrFI	CCNGG	5 cut(s)	134, 411, 1006, 1047, 1247
BmsI	GCATC	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	775
BpuMI	CCSGG	2 cut(s)	411, 1006
BsaBI	GATNNNNATC	1 cut(s)	681
BsaHI	GRCGYC	4 cut(s)	29, 309, 415, 659
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	5 cut(s)	132, 304, 369, 1005, 1046
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 806
Bse1I	ACTGG	2 cut(s)	66, 292
Bse3DI	GCAATG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	3 cut(s)	134, 1047, 1247
BseDI	CCNNGG	5 cut(s)	132, 304, 369, 1005, 1046
BseGI	GGATG	3 cut(s)	611, 795, 966
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 806
BseMI	GCAATG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	66, 292
BseRI	GAGGAG	2 cut(s)	216, 1232
BseSI	GKGCMC	1 cut(s)	719
BseXI	GCAGC	2 cut(s)	483, 655
BseYI	CCCAGC	1 cut(s)	995
BsgI	GTGCAG	1 cut(s)	865
BshFI	GGCC	4 cut(s)	71, 388, 794, 1157
BshNI	GGYRCC	2 cut(s)	320, 658
BsiHKAI	GWGCWC	1 cut(s)	719
BsiSI	CCGG	3 cut(s)	183, 411, 1005
BslI	CCNNNNNNNGG	4 cut(s)	264, 265, 554, 806
BsmAI	GTCTC	3 cut(s)	110, 282, 316
BsmBI	CGTCTC	2 cut(s)	110, 316
BsnI	GGCC	4 cut(s)	71, 388, 794, 1157
Bso31I	GGTCTC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	719
Bsp143I	GATC	4 cut(s)	150, 282, 564, 1001
BspACI	CCGC	2 cut(s)	113, 385
BspANI	GGCC	4 cut(s)	71, 388, 794, 1157
BspLI	GGNNCC	4 cut(s)	187, 322, 660, 838
BspPI	GGATC	2 cut(s)	572, 996
BspQI	GCTCTTC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	775
BspT107I	GGYRCC	2 cut(s)	320, 658
BspTNI	GGTCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	66, 292
BssECI	CCNNGG	5 cut(s)	132, 304, 369, 1005, 1046
BssMI	GATC	4 cut(s)	150, 282, 564, 1001
BssNI	GRCGYC	4 cut(s)	29, 309, 415, 659
BssSI	CACGAG	2 cut(s)	549, 990
BssT1I	CCWWGG	1 cut(s)	369
Bst2BI	CACGAG	2 cut(s)	549, 990
Bst2UI	CCWGG	3 cut(s)	134, 1047, 1247
Bst4CI	ACNGT	3 cut(s)	463, 628, 864
Bst6I	CTCTTC	4 cut(s)	201, 459, 807, 1184
BstACI	GRCGYC	4 cut(s)	29, 309, 415, 659
BstBI	TTCGAA	1 cut(s)	775
BstC8I	GCNNGC	5 cut(s)	139, 210, 273, 821, 1252
BstDEI	CTNAG	3 cut(s)	9, 702, 957
BstF5I	GGATG	3 cut(s)	611, 795, 966
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	661, 746
BstKTI	GATC	4 cut(s)	153, 285, 567, 1004
BstMAI	GTCTC	3 cut(s)	110, 282, 316
BstMBI	GATC	4 cut(s)	150, 282, 564, 1001
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 329, 667
BstNI	CCWGG	3 cut(s)	134, 1047, 1247
BstNSI	RCATGY	2 cut(s)	650, 850
BstSCI	CCNGG	5 cut(s)	132, 409, 1004, 1045, 1245
BstSLI	GKGCMC	1 cut(s)	719
BstV1I	GCAGC	2 cut(s)	483, 655
BsuRI	GGCC	4 cut(s)	71, 388, 794, 1157
BtrI	CACGTC	1 cut(s)	1257
BtsCI	GGATG	3 cut(s)	611, 795, 966
BtsIMutI	CAGTG	4 cut(s)	468, 719, 869, 882
Cac8I	GCNNGC	5 cut(s)	139, 210, 273, 821, 1252
CfoI	GCGC	2 cut(s)	661, 746
Cfr13I	GGNCC	1 cut(s)	792
CseI	GACGC	2 cut(s)	298, 423
Csp6I	GTAC	2 cut(s)	619, 872
CviAII	CATG	4 cut(s)	355, 647, 806, 847
CviQI	GTAC	2 cut(s)	619, 872
DdeI	CTNAG	3 cut(s)	9, 702, 957
DinI	GGCGCC	1 cut(s)	660
DpnI	GATC	4 cut(s)	152, 284, 566, 1003
DpnII	GATC	4 cut(s)	150, 282, 564, 1001
EaeI	YGGCCR	2 cut(s)	386, 1155
Eam1104I	CTCTTC	4 cut(s)	201, 459, 807, 1184
EarI	CTCTTC	4 cut(s)	201, 459, 807, 1184
Eco130I	CCWWGG	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	1128
EcoRII	CCWGG	3 cut(s)	132, 1045, 1245
EcoT14I	CCWWGG	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	660
EheI	GGCGCC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	2 cut(s)	110, 316
FaeI	CATG	4 cut(s)	358, 650, 809, 850
FatI	CATG	4 cut(s)	354, 646, 805, 846
Fnu4HI	GCNGC	3 cut(s)	386, 497, 644
FokI	GGATG	3 cut(s)	598, 782, 953
Fsp4HI	GCNGC	3 cut(s)	386, 497, 644
FspBI	CTAG	3 cut(s)	264, 1127, 1146
GlaI	GCGC	2 cut(s)	660, 745
GluI	GCNGC	3 cut(s)	386, 497, 644
GsaI	CCCAGC	1 cut(s)	999
HaeII	RGCGCY	1 cut(s)	662
HaeIII	GGCC	4 cut(s)	71, 388, 794, 1157
HapII	CCGG	3 cut(s)	183, 411, 1005
HgaI	GACGC	2 cut(s)	298, 423
HhaI	GCGC	2 cut(s)	661, 746
Hin1I	GRCGYC	4 cut(s)	29, 309, 415, 659
Hin1II	CATG	4 cut(s)	358, 650, 809, 850
Hin6I	GCGC	2 cut(s)	659, 744
HinP1I	GCGC	2 cut(s)	659, 744
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	3 cut(s)	221, 365, 1064
HpaII	CCGG	3 cut(s)	183, 411, 1005
HphI	GGTGA	5 cut(s)	76, 89, 515, 569, 821
Hpy166II	GTNNAC	4 cut(s)	80, 560, 631, 717
Hpy188I	TCNGA	7 cut(s)	10, 201, 282, 287, 537, 1108, 1139
Hpy188III	TCNNGA	3 cut(s)	858, 1037, 1127
Hpy8I	GTNNAC	4 cut(s)	80, 560, 631, 717
Hpy99I	CGWCG	2 cut(s)	31, 34
HpyAV	CCTTC	2 cut(s)	61, 431
HpyCH4III	ACNGT	3 cut(s)	463, 628, 864
HpyCH4IV	ACGT	2 cut(s)	29, 1256
HpyCH4V	TGCA	6 cut(s)	85, 208, 380, 717, 882, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 329, 667
HpyF3I	CTNAG	3 cut(s)	9, 702, 957
HpySE526I	ACGT	2 cut(s)	29, 1256
Hsp92I	GRCGYC	4 cut(s)	29, 309, 415, 659
Hsp92II	CATG	4 cut(s)	358, 650, 809, 850
HspAI	GCGC	2 cut(s)	659, 744
KasI	GGCGCC	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	150, 282, 564, 1001
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	4 cut(s)	185, 268, 836, 1105
Lsp1109I	GCAGC	2 cut(s)	483, 655
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	3 cut(s)	264, 1127, 1146
MaeII	ACGT	2 cut(s)	29, 1256
MaeIII	GTNAC	3 cut(s)	434, 1083, 1241
MalI	GATC	4 cut(s)	152, 284, 566, 1003
MboI	GATC	4 cut(s)	150, 282, 564, 1001
MhlI	GDGCHC	1 cut(s)	719
MlsI	TGGCCA	1 cut(s)	1157
MluCI	AATT	6 cut(s)	509, 531, 786, 934, 961, 1121
MluNI	TGGCCA	1 cut(s)	1157
Mly113I	GGCGCC	1 cut(s)	659
Mox20I	TGGCCA	1 cut(s)	1157
MroXI	GAANNNNTTC	1 cut(s)	1268
MscI	TGGCCA	1 cut(s)	1157
MseI	TTAA	5 cut(s)	36, 842, 933, 1238, 1284
MslI	CAYNNNNRTG	4 cut(s)	432, 722, 887, 1022
Msp20I	TGGCCA	1 cut(s)	1157
MspI	CCGG	3 cut(s)	183, 411, 1005
MspR9I	CCNGG	5 cut(s)	134, 411, 1006, 1047, 1247
MvaI	CCWGG	3 cut(s)	134, 1047, 1247
MwoI	GCNNNNNNNGC	3 cut(s)	242, 329, 667
NarI	GGCGCC	1 cut(s)	659
NciI	CCSGG	2 cut(s)	411, 1006
NdeII	GATC	4 cut(s)	150, 282, 564, 1001
NlaIII	CATG	4 cut(s)	358, 650, 809, 850
NlaIV	GGNNCC	4 cut(s)	187, 322, 660, 838
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	2 cut(s)	650, 850
NspV	TTCGAA	1 cut(s)	775
OliI	CACNNNNGTG	2 cut(s)	887, 1022
PciI	ACATGT	1 cut(s)	846
PciSI	GCTCTTC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	997
PdmI	GAANNNNTTC	1 cut(s)	1268
PfeI	GAWTC	3 cut(s)	221, 365, 1064
PkrI	GCNGC	3 cut(s)	387, 498, 645
PluTI	GGCGCC	1 cut(s)	662
PscI	ACATGT	1 cut(s)	846
PshBI	ATTAAT	1 cut(s)	933
Psp6I	CCWGG	3 cut(s)	132, 1045, 1245
PspFI	CCCAGC	1 cut(s)	995
PspGI	CCWGG	3 cut(s)	132, 1045, 1245
PspN4I	GGNNCC	4 cut(s)	187, 322, 660, 838
PspPI	GGNCC	1 cut(s)	792
RsaI	GTAC	2 cut(s)	620, 873
RsaNI	GTAC	2 cut(s)	619, 872
RseI	CAYNNNNRTG	4 cut(s)	432, 722, 887, 1022
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	5 cut(s)	36, 842, 933, 1238, 1284
SatI	GCNGC	3 cut(s)	386, 497, 644
Sau3AI	GATC	4 cut(s)	150, 282, 564, 1001
Sau96I	GGNCC	1 cut(s)	792
ScaI	AGTACT	1 cut(s)	620
ScrFI	CCNGG	5 cut(s)	134, 411, 1006, 1047, 1247
SduI	GDGCHC	1 cut(s)	719
SetI	ASST	8 cut(s)	32, 127, 214, 273, 375, 1163, 1259, 1283
SfaNI	GCATC	1 cut(s)	620
SfoI	GGCGCC	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	775
SmiMI	CAYNNNNRTG	4 cut(s)	432, 722, 887, 1022
Sse9I	AATT	6 cut(s)	509, 531, 786, 934, 961, 1121
SsiI	CCGC	2 cut(s)	113, 385
SspDI	GGCGCC	1 cut(s)	658
SspMI	CTAG	3 cut(s)	264, 1127, 1146
StyD4I	CCNGG	5 cut(s)	132, 409, 1004, 1045, 1245
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	463, 628, 864
TaiI	ACGT	2 cut(s)	32, 1259
TaqI	TCGA	4 cut(s)	521, 775, 973, 1163
TasI	AATT	6 cut(s)	509, 531, 786, 934, 961, 1121
TatI	WGTACW	2 cut(s)	618, 871
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	221, 365, 1064
Tru1I	TTAA	5 cut(s)	36, 842, 933, 1238, 1284
Tru9I	TTAA	5 cut(s)	36, 842, 933, 1238, 1284
TscAI	CASTG	4 cut(s)	468, 719, 869, 889
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	2 cut(s)	496, 643
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	413, 522, 794, 1184
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	4 cut(s)	468, 719, 869, 889
VneI	GTGCAC	1 cut(s)	715
VspI	ATTAAT	1 cut(s)	933
XapI	RAATTY	2 cut(s)	509, 531
XbaI	TCTAGA	1 cut(s)	1126
XceI	RCATGY	2 cut(s)	650, 850
XmnI	GAANNNNTTC	1 cut(s)	1268
XspI	CTAG	3 cut(s)	264, 1127, 1146
ZraI	GACGTC	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.