Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000870.1

Orthogroup ID

OG0018209

Physical Location & Seq

Genomic Coordinates Reverse (-)

4541 .. 9801

Gene Structure 5261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000870.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atgggggagttggcgttgaagagtctggggtctgagttggaagaaaacacgacgtcgtttaagagtttggggctatgcgataaactggtgaaggccgttggtgaactgcaatggaaagcccctacccctattcaagcggagacgatacctcacgccctggcaggcaaacacttgatcgcacttgcccaaacgggttcgggtaaaaccggagcctttgctcttccgatactgcaagctctaatggattctcctcaaaaagccttttttgctttggttctctccccaacaagggagcttgctgttcagatcagagaccagtttgaagccctcggcgtctccattggtgccaagtctgctgtgcttattggaggactgaacatggtggaagaatctaaggttcttgcaaggcggccacacatcattgttgcgacacccggacgcctccttcatcatctgcgtgacacaaagggattttctattcgcacagtgaaatatctggttttagacgaggcagacaggctgcttggtgatgaatttcaaaaatcgacagatgaaattctgaaatccctccctcgtggtggtgaacggatcacatatttattttctgctacgatgaccaaaaaggtcaagaaggttgaaagagtttgtctaaggaaccctgtgaagattgaagtagcatccaagtactctacggttgacacactaaagcagcatgtattgatggcgccgttcaagcacaaggattgctatctcgtatatattcttactaagaagtgtcagtgcacaacaatggtttttactgaacaatgcgccacagcaccctttttggcttatacacttcgaaatcttggaattagggccatccctcttcatggtgatatgagccagcaaaaaagacttggagccttaaacatgttcaaatcaggacagtgtaacgtacttgtctgcactgatgtggcaagtagaggattggatattccatcggtggatatggttattaattatgatattcccaagaacactaagaattacatccatcgagtaggaagaactgctcgtgctgggcgatccggggttgcaatcactttcgtgggcagtattcttgacttaccagggtattcccagatagaatcgcttattggcaataagttaccactatttcctgctccatctgaagaagccttacaatttctagaaagtgtcagagaggctagaagattggccacctcgaaaatgaaagaaagtggaggcaagaagagaaagtggggaggaaacgatgatgaggaggatattgtaaagtatttaagtaaccaggctggcacgtccaagaagatgttcaacaaaaggtttaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

452

Amino Acids

49.86

Weight (kDa)

9.6

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018209)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218021
rosa_laevigata	RLG00000002422
rosa_multiflora	Rmu_sc0000870.1_g000002 Rmu_sc0008242.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241500
rosa_rugosa	Rorug07G0173000
rosa_samantha	Rh7AG315300 Rh7CG332700 Rh7DG313700
rosa_wichuraiana	Rw7G026640 Rw7G026720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccB1I	GGYRCC	2 cut(s)	344, 724
AciI	CCGC	2 cut(s)	137, 409
AclWI	GGATC	2 cut(s)	596, 1062
AcoI	YGGCCR	2 cut(s)	410, 1221
AcsI	RAATTY	2 cut(s)	533, 555
AcuI	CTGAAG	1 cut(s)	1194
AcyI	GRCGYC	4 cut(s)	53, 333, 439, 725
AfaI	GTAC	2 cut(s)	686, 939
AfiI	CCNNNNNNNGG	4 cut(s)	288, 289, 578, 872
AflIII	ACRYGT	1 cut(s)	912
AgsI	TTSAA	9 cut(s)	19, 134, 323, 539, 638, 671, 733, 919, 1339
AjiI	CACGTC	1 cut(s)	1323
AjnI	CCWGG	3 cut(s)	156, 1111, 1311
AjuI	GAANNNNNNNTTGG	4 cut(s)	1122, 1154, 1319, 1351
AleI	CACNNNNGTG	2 cut(s)	953, 1088
AluBI	AGCT	2 cut(s)	236, 295
AluI	AGCT	2 cut(s)	236, 295
Alw21I	GWGCWC	1 cut(s)	785
Alw26I	GTCTC	3 cut(s)	134, 306, 340
Alw44I	GTGCAC	1 cut(s)	781
AlwI	GGATC	2 cut(s)	596, 1062
AoxI	GGCC	4 cut(s)	93, 410, 858, 1221
ApaLI	GTGCAC	1 cut(s)	781
ApeKI	GCWGC	2 cut(s)	520, 709
ApoI	RAATTY	2 cut(s)	533, 555
AseI	ATTAAT	1 cut(s)	999
Asp700I	GAANNNNTTC	1 cut(s)	1334
AspLEI	GCGC	2 cut(s)	727, 812
AspS9I	GGNCC	1 cut(s)	858
AsuC2I	CCSGG	2 cut(s)	435, 1072
AsuHPI	GGTGA	5 cut(s)	100, 113, 539, 593, 887
AsuII	TTCGAA	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	785
BalI	TGGCCA	1 cut(s)	1223
BanI	GGYRCC	2 cut(s)	344, 724
BarI	GAAGNNNNNNTAC	2 cut(s)	1167, 1199
BauI	CACGAG	2 cut(s)	573, 1056
Bbv12I	GWGCWC	1 cut(s)	785
BbvI	GCAGC	2 cut(s)	507, 721
BccI	CCATC	5 cut(s)	715, 869, 988, 1044, 1177
BceAI	ACGGC	2 cut(s)	80, 712
BciT130I	CCWGG	3 cut(s)	158, 1113, 1313
BcnI	CCSGG	2 cut(s)	435, 1072
BcoDI	GTCTC	3 cut(s)	134, 306, 340
BfaI	CTAG	2 cut(s)	1193, 1212
BfoI	RGCGCY	1 cut(s)	728
BisI	GCNGC	3 cut(s)	410, 521, 710
BlsI	GCNGC	3 cut(s)	411, 522, 711
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	5 cut(s)	158, 435, 1072, 1113, 1313
BmgBI	CACGTC	1 cut(s)	1323
BmgT120I	GGNCC	1 cut(s)	858
BmiI	GGNNCC	5 cut(s)	211, 346, 656, 726, 904
BmrFI	CCNGG	5 cut(s)	158, 435, 1072, 1113, 1313
BmsI	GCATC	1 cut(s)	686
Bpu14I	TTCGAA	1 cut(s)	841
BpuMI	CCSGG	2 cut(s)	435, 1072
BsaBI	GATNNNNATC	1 cut(s)	747
BsaHI	GRCGYC	4 cut(s)	53, 333, 439, 725
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	156, 328, 1071, 1112
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	4 cut(s)	288, 289, 578, 872
Bse1I	ACTGG	2 cut(s)	90, 316
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	3 cut(s)	158, 1113, 1313
BseDI	CCNNGG	4 cut(s)	156, 328, 1071, 1112
BseGI	GGATG	3 cut(s)	677, 861, 1032
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	4 cut(s)	288, 289, 578, 872
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	90, 316
BseRI	GAGGAG	2 cut(s)	240, 1298
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	2 cut(s)	507, 721
BseYI	CCCAGC	1 cut(s)	1061
BsgI	GTGCAG	1 cut(s)	931
BshFI	GGCC	4 cut(s)	95, 412, 860, 1223
BshNI	GGYRCC	2 cut(s)	344, 724
BsiHKAI	GWGCWC	1 cut(s)	785
BsiSI	CCGG	3 cut(s)	207, 435, 1071
BslI	CCNNNNNNNGG	4 cut(s)	288, 289, 578, 872
BsmAI	GTCTC	3 cut(s)	134, 306, 340
BsmBI	CGTCTC	2 cut(s)	134, 340
BsnI	GGCC	4 cut(s)	95, 412, 860, 1223
Bso31I	GGTCTC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	785
Bsp143I	GATC	4 cut(s)	174, 306, 588, 1067
BspACI	CCGC	2 cut(s)	137, 409
BspANI	GGCC	4 cut(s)	95, 412, 860, 1223
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	5 cut(s)	211, 346, 656, 726, 904
BspPI	GGATC	2 cut(s)	596, 1062
BspQI	GCTCTTC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	841
BspT107I	GGYRCC	2 cut(s)	344, 724
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	90, 316
BssECI	CCNNGG	4 cut(s)	156, 328, 1071, 1112
BssMI	GATC	4 cut(s)	174, 306, 588, 1067
BssNI	GRCGYC	4 cut(s)	53, 333, 439, 725
BssSI	CACGAG	2 cut(s)	573, 1056
Bst2BI	CACGAG	2 cut(s)	573, 1056
Bst2UI	CCWGG	3 cut(s)	158, 1113, 1313
Bst4CI	ACNGT	3 cut(s)	487, 694, 930
Bst6I	CTCTTC	4 cut(s)	14, 225, 873, 1250
BstACI	GRCGYC	4 cut(s)	53, 333, 439, 725
BstBI	TTCGAA	1 cut(s)	841
BstC8I	GCNNGC	5 cut(s)	163, 234, 297, 887, 1318
BstDEI	CTNAG	5 cut(s)	33, 393, 650, 768, 1023
BstF5I	GGATG	3 cut(s)	677, 861, 1032
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	2 cut(s)	727, 812
BstKTI	GATC	4 cut(s)	177, 309, 591, 1070
BstMAI	GTCTC	3 cut(s)	134, 306, 340
BstMBI	GATC	4 cut(s)	174, 306, 588, 1067
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 353, 733
BstNI	CCWGG	3 cut(s)	158, 1113, 1313
BstNSI	RCATGY	2 cut(s)	716, 916
BstSCI	CCNGG	5 cut(s)	156, 433, 1070, 1111, 1311
BstSLI	GKGCMC	1 cut(s)	785
BstV1I	GCAGC	2 cut(s)	507, 721
BsuRI	GGCC	4 cut(s)	95, 412, 860, 1223
BtrI	CACGTC	1 cut(s)	1323
BtsCI	GGATG	3 cut(s)	677, 861, 1032
BtsIMutI	CAGTG	4 cut(s)	492, 785, 935, 948
Cac8I	GCNNGC	5 cut(s)	163, 234, 297, 887, 1318
CfoI	GCGC	2 cut(s)	727, 812
Cfr13I	GGNCC	1 cut(s)	858
CseI	GACGC	2 cut(s)	322, 447
Csp6I	GTAC	2 cut(s)	685, 938
CviAII	CATG	4 cut(s)	379, 713, 872, 913
CviQI	GTAC	2 cut(s)	685, 938
DdeI	CTNAG	5 cut(s)	33, 393, 650, 768, 1023
DinI	GGCGCC	1 cut(s)	726
DpnI	GATC	4 cut(s)	176, 308, 590, 1069
DpnII	GATC	4 cut(s)	174, 306, 588, 1067
EaeI	YGGCCR	2 cut(s)	410, 1221
Eam1104I	CTCTTC	4 cut(s)	14, 225, 873, 1250
EarI	CTCTTC	4 cut(s)	14, 225, 873, 1250
Eco31I	GGTCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	1194
EcoRII	CCWGG	3 cut(s)	156, 1111, 1311
EgeI	GGCGCC	1 cut(s)	726
EheI	GGCGCC	1 cut(s)	726
Esp3I	CGTCTC	2 cut(s)	134, 340
FaeI	CATG	4 cut(s)	382, 716, 875, 916
FatI	CATG	4 cut(s)	378, 712, 871, 912
Fnu4HI	GCNGC	3 cut(s)	410, 521, 710
FokI	GGATG	3 cut(s)	664, 848, 1019
Fsp4HI	GCNGC	3 cut(s)	410, 521, 710
FspBI	CTAG	2 cut(s)	1193, 1212
GlaI	GCGC	2 cut(s)	726, 811
GluI	GCNGC	3 cut(s)	410, 521, 710
GsaI	CCCAGC	1 cut(s)	1065
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	4 cut(s)	95, 412, 860, 1223
HapII	CCGG	3 cut(s)	207, 435, 1071
HgaI	GACGC	2 cut(s)	322, 447
HhaI	GCGC	2 cut(s)	727, 812
Hin1I	GRCGYC	4 cut(s)	53, 333, 439, 725
Hin1II	CATG	4 cut(s)	382, 716, 875, 916
Hin6I	GCGC	2 cut(s)	725, 810
HinP1I	GCGC	2 cut(s)	725, 810
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	4 cut(s)	22, 245, 389, 1130
HpaII	CCGG	3 cut(s)	207, 435, 1071
HphI	GGTGA	5 cut(s)	100, 113, 539, 593, 887
Hpy166II	GTNNAC	4 cut(s)	104, 584, 697, 783
Hpy188I	TCNGA	7 cut(s)	34, 225, 306, 311, 561, 1174, 1205
Hpy188III	TCNNGA	4 cut(s)	628, 924, 1103, 1193
Hpy8I	GTNNAC	4 cut(s)	104, 584, 697, 783
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyAV	CCTTC	3 cut(s)	85, 455, 625
HpyCH4III	ACNGT	3 cut(s)	487, 694, 930
HpyCH4IV	ACGT	3 cut(s)	53, 936, 1322
HpyCH4V	TGCA	6 cut(s)	109, 232, 404, 783, 948, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 353, 733
HpyF3I	CTNAG	5 cut(s)	33, 393, 650, 768, 1023
HpySE526I	ACGT	3 cut(s)	53, 936, 1322
Hsp92I	GRCGYC	4 cut(s)	53, 333, 439, 725
Hsp92II	CATG	4 cut(s)	382, 716, 875, 916
HspAI	GCGC	2 cut(s)	725, 810
KasI	GGCGCC	1 cut(s)	724
Kzo9I	GATC	4 cut(s)	174, 306, 588, 1067
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	4 cut(s)	209, 292, 902, 1171
Lsp1109I	GCAGC	2 cut(s)	507, 721
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	2 cut(s)	1193, 1212
MaeII	ACGT	3 cut(s)	53, 936, 1322
MaeIII	GTNAC	4 cut(s)	458, 932, 1149, 1307
MalI	GATC	4 cut(s)	176, 308, 590, 1069
MboI	GATC	4 cut(s)	174, 306, 588, 1067
MhlI	GDGCHC	1 cut(s)	785
MlsI	TGGCCA	1 cut(s)	1223
MluCI	AATT	6 cut(s)	533, 555, 852, 1000, 1027, 1187
MluNI	TGGCCA	1 cut(s)	1223
Mly113I	GGCGCC	1 cut(s)	725
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	18
Mox20I	TGGCCA	1 cut(s)	1223
MroXI	GAANNNNTTC	1 cut(s)	1334
MscI	TGGCCA	1 cut(s)	1223
MseI	TTAA	5 cut(s)	60, 908, 999, 1304, 1350
MslI	CAYNNNNRTG	4 cut(s)	456, 788, 953, 1088
Msp20I	TGGCCA	1 cut(s)	1223
MspI	CCGG	3 cut(s)	207, 435, 1071
MspR9I	CCNGG	5 cut(s)	158, 435, 1072, 1113, 1313
MvaI	CCWGG	3 cut(s)	158, 1113, 1313
MwoI	GCNNNNNNNGC	3 cut(s)	266, 353, 733
NarI	GGCGCC	1 cut(s)	725
NciI	CCSGG	2 cut(s)	435, 1072
NdeII	GATC	4 cut(s)	174, 306, 588, 1067
NlaIII	CATG	4 cut(s)	382, 716, 875, 916
NlaIV	GGNNCC	5 cut(s)	211, 346, 656, 726, 904
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	2 cut(s)	716, 916
NspV	TTCGAA	1 cut(s)	841
OliI	CACNNNNGTG	2 cut(s)	953, 1088
PciI	ACATGT	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	1063
PdmI	GAANNNNTTC	1 cut(s)	1334
PfeI	GAWTC	3 cut(s)	245, 389, 1130
PkrI	GCNGC	3 cut(s)	411, 522, 711
PleI	GAGTC	1 cut(s)	30
PluTI	GGCGCC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	912
PshBI	ATTAAT	1 cut(s)	999
Psp6I	CCWGG	3 cut(s)	156, 1111, 1311
PspFI	CCCAGC	1 cut(s)	1061
PspGI	CCWGG	3 cut(s)	156, 1111, 1311
PspN4I	GGNNCC	5 cut(s)	211, 346, 656, 726, 904
PspPI	GGNCC	1 cut(s)	858
RsaI	GTAC	2 cut(s)	686, 939
RsaNI	GTAC	2 cut(s)	685, 938
RseI	CAYNNNNRTG	4 cut(s)	456, 788, 953, 1088
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	60, 908, 999, 1304, 1350
SatI	GCNGC	3 cut(s)	410, 521, 710
Sau3AI	GATC	4 cut(s)	174, 306, 588, 1067
Sau96I	GGNCC	1 cut(s)	858
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	5 cut(s)	158, 435, 1072, 1113, 1313
SduI	GDGCHC	1 cut(s)	785
SfaNI	GCATC	1 cut(s)	686
SfoI	GGCGCC	1 cut(s)	726
SfuI	TTCGAA	1 cut(s)	841
SmiMI	CAYNNNNRTG	4 cut(s)	456, 788, 953, 1088
Sse9I	AATT	6 cut(s)	533, 555, 852, 1000, 1027, 1187
SsiI	CCGC	2 cut(s)	137, 409
SspDI	GGCGCC	1 cut(s)	724
SspMI	CTAG	2 cut(s)	1193, 1212
StyD4I	CCNGG	5 cut(s)	156, 433, 1070, 1111, 1311
TaaI	ACNGT	3 cut(s)	487, 694, 930
TaiI	ACGT	3 cut(s)	56, 939, 1325
TaqI	TCGA	4 cut(s)	545, 841, 1039, 1229
TasI	AATT	6 cut(s)	533, 555, 852, 1000, 1027, 1187
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	3 cut(s)	245, 389, 1130
Tru1I	TTAA	5 cut(s)	60, 908, 999, 1304, 1350
Tru9I	TTAA	5 cut(s)	60, 908, 999, 1304, 1350
TscAI	CASTG	4 cut(s)	492, 785, 935, 955
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	520, 709
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	5 cut(s)	437, 546, 567, 860, 1250
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	4 cut(s)	492, 785, 935, 955
VneI	GTGCAC	1 cut(s)	781
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	2 cut(s)	533, 555
XbaI	TCTAGA	1 cut(s)	1192
XceI	RCATGY	2 cut(s)	716, 916
XmnI	GAANNNNTTC	1 cut(s)	1334
XspI	CTAG	2 cut(s)	1193, 1212
ZraI	GACGTC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.