Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018209

Physical Location & Seq

Genomic Coordinates Forward (+)

36838097 .. 36843311

Gene Structure 5215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG332700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGGGTCTGAGTTGGAAGAAAACACGACGATGTCGTTTAAGAGTTTGGGGCTATGCGATGAACTGGTGAAGGCCGTCGGTGAACTGCAATGGAAAGCCCCTACCCCTATTCAAGCGGAGACGATACCTCACGCCCTGGCAGGCAAACACTTGATCGCACTTGCCCAAACGGGTTCGGGTAAAACCGGAGCCTTTGCTCTTCCGATACTGCAAGCTCTAATGGATTCTCCTCAAAAAGCCTTTTTTGCTTTGGTTCTCTCCCCAACAAGGGAGCTTGCTGTTCAGATCAGAGACCAGTTTGAAGCCCTCGGCGTCTCCATTGGTGCCAAGTCTGCTGTGCTTATTGGAGGACTGAACATGGTGGAAGAATCTAAGGTTCTTGCAAGGCGGCCACACATCATTGTTGCGACACCCGGACGCCTCCTTCATCATCTGCGTGACACAAAGGGATTTTCTCTTCGCACAGTGAAATATCTGGTTTTAGACGAGGCAGACAGGCTGCTTGGTGATGAATTTCAAAAATCGACAGATGAAATTCTGAAATCCCTCCCTCGTGGTGGTGAACGGATCACATATTTATTTTCTGCTACGATGACCAAAAAGGTCAAGAAGGTTGAAAGAGCTTGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCCAAGTACTCTACGGTTGACACACTAAAGCAGCATGTATTGATGGCGCCATTCAAGCACAAGGATTGCTATCTCGTATATATTCTTACTAAGAAGTGTCAGTGCACAACAATGGTTTTTACCGAACAATGCGCCACAGCACCCTTTTTGGCTTATACACTTCGAAATCTTGGAATTAGGGCCATCCCTCTTCATGGTGATATGAGCCAGCAAAAAAGACTTGGAGCCTTAAACATGTTCAAATCAGGACAGTGTAATGTACTTGTCTGCACTGATGTGGCAAGTAGAGGATTGGATATTCCATCGGTGGATATGGTTATTAATTATGATATTCCCAAGAACACTAAGAATTACATCCATCGAGTAGGAAGAACTGCTCGTGCTGGGCGATCTGGGGTTGCAATCACTTTCGTGGGCAGTATTCTTGACTTACCAGGGTATTCCCAGATAGAATCGCTTATTGGCAATAAGTTACCGCTATTTCCTGCTCCATCTGAAGAAGCCTTACAATTTCTAGAAAGTGTCAAAGAGGCTAGAAGATTGGCCACCTCGAAAATGAAAGAAAGTGGAGGCAAGAAGAGAAAGTGGGGAGGAAATGACGATGAGGAGGATATTGTAAAGTATTTAAGTAACCAGGCTGGCACGTCCAAGAAGATGTTCAACAAAAGGTTTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

445

Amino Acids

49.13

Weight (kDa)

9.53

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	35 - 205	2e-45	DEAD/DEAH box helicase
ResIII	PF04851	49 - 184	1.2e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	243 - 348	1.3e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018209)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0218021
rosa_laevigata	RLG00000002422
rosa_multiflora	Rmu_sc0000870.1_g000002 Rmu_sc0008242.1_g000003
rosa_roxburghii	Rroxscaffold_3G00241500
rosa_rugosa	Rorug07G0173000
rosa_samantha	Rh7AG315300 Rh7CG332700 Rh7DG313700
rosa_wichuraiana	Rw7G026640 Rw7G026720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	323, 703
AciI	CCGC	3 cut(s)	116, 388, 1133
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	2 cut(s)	389, 1200
AcsI	RAATTY	2 cut(s)	512, 534
AcuI	CTGAAG	1 cut(s)	1173
AcyI	GRCGYC	3 cut(s)	312, 418, 704
AfaI	GTAC	2 cut(s)	665, 918
AfiI	CCNNNNNNNGG	4 cut(s)	267, 268, 557, 851
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	8 cut(s)	113, 302, 518, 617, 650, 712, 898, 1318
AjiI	CACGTC	1 cut(s)	1302
AjnI	CCWGG	3 cut(s)	135, 1090, 1290
AjuI	GAANNNNNNNTTGG	4 cut(s)	1101, 1133, 1298, 1330
AleI	CACNNNNGTG	2 cut(s)	932, 1067
AluBI	AGCT	3 cut(s)	215, 274, 623
AluI	AGCT	3 cut(s)	215, 274, 623
Alw21I	GWGCWC	1 cut(s)	764
Alw26I	GTCTC	3 cut(s)	113, 285, 319
Alw44I	GTGCAC	1 cut(s)	760
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	4 cut(s)	72, 389, 837, 1200
ApaLI	GTGCAC	1 cut(s)	760
ApeKI	GCWGC	2 cut(s)	499, 688
ApoI	RAATTY	2 cut(s)	512, 534
AseI	ATTAAT	1 cut(s)	978
Asp700I	GAANNNNTTC	1 cut(s)	1313
AspLEI	GCGC	2 cut(s)	706, 791
AspS9I	GGNCC	1 cut(s)	837
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	5 cut(s)	79, 92, 518, 572, 866
AsuII	TTCGAA	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	764
BalI	TGGCCA	1 cut(s)	1202
BanI	GGYRCC	2 cut(s)	323, 703
BarI	GAAGNNNNNNTAC	2 cut(s)	1146, 1178
BauI	CACGAG	2 cut(s)	552, 1035
Bbv12I	GWGCWC	1 cut(s)	764
BbvI	GCAGC	2 cut(s)	486, 700
BccI	CCATC	5 cut(s)	694, 848, 967, 1023, 1156
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	3 cut(s)	137, 1092, 1292
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	3 cut(s)	113, 285, 319
BfaI	CTAG	2 cut(s)	1172, 1191
BfoI	RGCGCY	1 cut(s)	707
BisI	GCNGC	3 cut(s)	389, 500, 689
BlsI	GCNGC	3 cut(s)	390, 501, 690
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	4 cut(s)	137, 414, 1092, 1292
BmgBI	CACGTC	1 cut(s)	1302
BmgT120I	GGNCC	1 cut(s)	837
BmiI	GGNNCC	5 cut(s)	190, 325, 635, 705, 883
BmrFI	CCNGG	4 cut(s)	137, 414, 1092, 1292
BmsI	GCATC	1 cut(s)	665
Bpu14I	TTCGAA	1 cut(s)	820
BpuMI	CCSGG	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	726
BsaHI	GRCGYC	3 cut(s)	312, 418, 704
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	135, 307, 1091
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 268, 557, 851
Bse1I	ACTGG	2 cut(s)	69, 295
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	3 cut(s)	137, 1092, 1292
BseDI	CCNNGG	3 cut(s)	135, 307, 1091
BseGI	GGATG	3 cut(s)	656, 840, 1011
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	4 cut(s)	267, 268, 557, 851
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	69, 295
BseRI	GAGGAG	2 cut(s)	219, 1277
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	2 cut(s)	486, 700
BseYI	CCCAGC	1 cut(s)	1040
BsgI	GTGCAG	1 cut(s)	910
BshFI	GGCC	4 cut(s)	74, 391, 839, 1202
BshNI	GGYRCC	2 cut(s)	323, 703
BsiHKAI	GWGCWC	1 cut(s)	764
BsiSI	CCGG	2 cut(s)	186, 414
BslI	CCNNNNNNNGG	4 cut(s)	267, 268, 557, 851
BsmAI	GTCTC	3 cut(s)	113, 285, 319
BsmBI	CGTCTC	2 cut(s)	113, 319
BsnI	GGCC	4 cut(s)	74, 391, 839, 1202
Bso31I	GGTCTC	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	4 cut(s)	153, 285, 567, 1046
BspACI	CCGC	3 cut(s)	116, 388, 1133
BspANI	GGCC	4 cut(s)	74, 391, 839, 1202
BspLI	GGNNCC	5 cut(s)	190, 325, 635, 705, 883
BspPI	GGATC	1 cut(s)	575
BspQI	GCTCTTC	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	820
BspT107I	GGYRCC	2 cut(s)	323, 703
BspTNI	GGTCTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	69, 295
BssECI	CCNNGG	3 cut(s)	135, 307, 1091
BssMI	GATC	4 cut(s)	153, 285, 567, 1046
BssNI	GRCGYC	3 cut(s)	312, 418, 704
BssSI	CACGAG	2 cut(s)	552, 1035
Bst2BI	CACGAG	2 cut(s)	552, 1035
Bst2UI	CCWGG	3 cut(s)	137, 1092, 1292
Bst4CI	ACNGT	3 cut(s)	466, 673, 909
Bst6I	CTCTTC	4 cut(s)	204, 462, 852, 1229
BstACI	GRCGYC	3 cut(s)	312, 418, 704
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	5 cut(s)	142, 213, 276, 866, 1297
BstDEI	CTNAG	5 cut(s)	9, 372, 629, 747, 1002
BstF5I	GGATG	3 cut(s)	656, 840, 1011
BstH2I	RGCGCY	1 cut(s)	707
BstHHI	GCGC	2 cut(s)	706, 791
BstKTI	GATC	4 cut(s)	156, 288, 570, 1049
BstMAI	GTCTC	3 cut(s)	113, 285, 319
BstMBI	GATC	4 cut(s)	153, 285, 567, 1046
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 332, 712
BstNI	CCWGG	3 cut(s)	137, 1092, 1292
BstNSI	RCATGY	2 cut(s)	695, 895
BstSCI	CCNGG	4 cut(s)	135, 412, 1090, 1290
BstSLI	GKGCMC	1 cut(s)	764
BstV1I	GCAGC	2 cut(s)	486, 700
BsuRI	GGCC	4 cut(s)	74, 391, 839, 1202
BtgZI	GCGATG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	1302
BtsCI	GGATG	3 cut(s)	656, 840, 1011
BtsIMutI	CAGTG	4 cut(s)	471, 764, 914, 927
Cac8I	GCNNGC	5 cut(s)	142, 213, 276, 866, 1297
CfoI	GCGC	2 cut(s)	706, 791
Cfr13I	GGNCC	1 cut(s)	837
CseI	GACGC	2 cut(s)	301, 426
Csp6I	GTAC	2 cut(s)	664, 917
CviAII	CATG	4 cut(s)	358, 692, 851, 892
CviQI	GTAC	2 cut(s)	664, 917
DdeI	CTNAG	5 cut(s)	9, 372, 629, 747, 1002
DinI	GGCGCC	1 cut(s)	705
DpnI	GATC	4 cut(s)	155, 287, 569, 1048
DpnII	GATC	4 cut(s)	153, 285, 567, 1046
EaeI	YGGCCR	2 cut(s)	389, 1200
Eam1104I	CTCTTC	4 cut(s)	204, 462, 852, 1229
EarI	CTCTTC	4 cut(s)	204, 462, 852, 1229
Eco31I	GGTCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	1173
EcoRII	CCWGG	3 cut(s)	135, 1090, 1290
EgeI	GGCGCC	1 cut(s)	705
EheI	GGCGCC	1 cut(s)	705
Esp3I	CGTCTC	2 cut(s)	113, 319
FaeI	CATG	4 cut(s)	361, 695, 854, 895
FatI	CATG	4 cut(s)	357, 691, 850, 891
Fnu4HI	GCNGC	3 cut(s)	389, 500, 689
FokI	GGATG	3 cut(s)	643, 827, 998
Fsp4HI	GCNGC	3 cut(s)	389, 500, 689
FspBI	CTAG	2 cut(s)	1172, 1191
GlaI	GCGC	2 cut(s)	705, 790
GluI	GCNGC	3 cut(s)	389, 500, 689
GsaI	CCCAGC	1 cut(s)	1044
HaeII	RGCGCY	1 cut(s)	707
HaeIII	GGCC	4 cut(s)	74, 391, 839, 1202
HapII	CCGG	2 cut(s)	186, 414
HgaI	GACGC	2 cut(s)	301, 426
HhaI	GCGC	2 cut(s)	706, 791
Hin1I	GRCGYC	3 cut(s)	312, 418, 704
Hin1II	CATG	4 cut(s)	361, 695, 854, 895
Hin6I	GCGC	2 cut(s)	704, 789
HinP1I	GCGC	2 cut(s)	704, 789
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	3 cut(s)	224, 368, 1109
HpaII	CCGG	2 cut(s)	186, 414
HphI	GGTGA	5 cut(s)	79, 92, 518, 572, 866
Hpy166II	GTNNAC	4 cut(s)	83, 563, 676, 762
Hpy188I	TCNGA	6 cut(s)	10, 204, 285, 290, 540, 1153
Hpy188III	TCNNGA	4 cut(s)	607, 903, 1082, 1172
Hpy8I	GTNNAC	4 cut(s)	83, 563, 676, 762
Hpy99I	CGWCG	2 cut(s)	31, 80
HpyAV	CCTTC	3 cut(s)	64, 434, 604
HpyCH4III	ACNGT	3 cut(s)	466, 673, 909
HpyCH4IV	ACGT	1 cut(s)	1301
HpyCH4V	TGCA	6 cut(s)	88, 211, 383, 762, 927, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 332, 712
HpyF3I	CTNAG	5 cut(s)	9, 372, 629, 747, 1002
HpySE526I	ACGT	1 cut(s)	1301
Hsp92I	GRCGYC	3 cut(s)	312, 418, 704
Hsp92II	CATG	4 cut(s)	361, 695, 854, 895
HspAI	GCGC	2 cut(s)	704, 789
KasI	GGCGCC	1 cut(s)	703
Kzo9I	GATC	4 cut(s)	153, 285, 567, 1046
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	4 cut(s)	188, 271, 881, 1150
Lsp1109I	GCAGC	2 cut(s)	486, 700
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	2 cut(s)	1172, 1191
MaeII	ACGT	1 cut(s)	1301
MaeIII	GTNAC	3 cut(s)	437, 1128, 1286
MalI	GATC	4 cut(s)	155, 287, 569, 1048
MboI	GATC	4 cut(s)	153, 285, 567, 1046
MhlI	GDGCHC	1 cut(s)	764
MlsI	TGGCCA	1 cut(s)	1202
MluCI	AATT	6 cut(s)	512, 534, 831, 979, 1006, 1166
MluNI	TGGCCA	1 cut(s)	1202
Mly113I	GGCGCC	1 cut(s)	704
Mox20I	TGGCCA	1 cut(s)	1202
MroXI	GAANNNNTTC	1 cut(s)	1313
MscI	TGGCCA	1 cut(s)	1202
MseI	TTAA	5 cut(s)	39, 887, 978, 1283, 1329
MslI	CAYNNNNRTG	5 cut(s)	29, 435, 767, 932, 1067
Msp20I	TGGCCA	1 cut(s)	1202
MspI	CCGG	2 cut(s)	186, 414
MspR9I	CCNGG	4 cut(s)	137, 414, 1092, 1292
MvaI	CCWGG	3 cut(s)	137, 1092, 1292
MwoI	GCNNNNNNNGC	3 cut(s)	245, 332, 712
NarI	GGCGCC	1 cut(s)	704
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	153, 285, 567, 1046
NlaIII	CATG	4 cut(s)	361, 695, 854, 895
NlaIV	GGNNCC	5 cut(s)	190, 325, 635, 705, 883
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	2 cut(s)	695, 895
NspV	TTCGAA	1 cut(s)	820
OliI	CACNNNNGTG	2 cut(s)	932, 1067
PciI	ACATGT	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 1042
PdmI	GAANNNNTTC	1 cut(s)	1313
PfeI	GAWTC	3 cut(s)	224, 368, 1109
PflFI	GACNNNGTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	390, 501, 690
PluTI	GGCGCC	1 cut(s)	707
PscI	ACATGT	1 cut(s)	891
PshBI	ATTAAT	1 cut(s)	978
Psp6I	CCWGG	3 cut(s)	135, 1090, 1290
PspFI	CCCAGC	1 cut(s)	1040
PspGI	CCWGG	3 cut(s)	135, 1090, 1290
PspN4I	GGNNCC	5 cut(s)	190, 325, 635, 705, 883
PspPI	GGNCC	1 cut(s)	837
PsyI	GACNNNGTC	1 cut(s)	31
RsaI	GTAC	2 cut(s)	665, 918
RsaNI	GTAC	2 cut(s)	664, 917
RseI	CAYNNNNRTG	5 cut(s)	29, 435, 767, 932, 1067
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	5 cut(s)	39, 887, 978, 1283, 1329
SatI	GCNGC	3 cut(s)	389, 500, 689
Sau3AI	GATC	4 cut(s)	153, 285, 567, 1046
Sau96I	GGNCC	1 cut(s)	837
ScaI	AGTACT	1 cut(s)	665
ScrFI	CCNGG	4 cut(s)	137, 414, 1092, 1292
SduI	GDGCHC	1 cut(s)	764
SfaNI	GCATC	1 cut(s)	665
SfoI	GGCGCC	1 cut(s)	705
SfuI	TTCGAA	1 cut(s)	820
SmiMI	CAYNNNNRTG	5 cut(s)	29, 435, 767, 932, 1067
Sse9I	AATT	6 cut(s)	512, 534, 831, 979, 1006, 1166
SsiI	CCGC	3 cut(s)	116, 388, 1133
SspDI	GGCGCC	1 cut(s)	703
SspMI	CTAG	2 cut(s)	1172, 1191
StyD4I	CCNGG	4 cut(s)	135, 412, 1090, 1290
TaaI	ACNGT	3 cut(s)	466, 673, 909
TaiI	ACGT	1 cut(s)	1304
TaqI	TCGA	4 cut(s)	524, 820, 1018, 1208
TasI	AATT	6 cut(s)	512, 534, 831, 979, 1006, 1166
TatI	WGTACW	2 cut(s)	663, 916
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	3 cut(s)	224, 368, 1109
Tru1I	TTAA	5 cut(s)	39, 887, 978, 1283, 1329
Tru9I	TTAA	5 cut(s)	39, 887, 978, 1283, 1329
TscAI	CASTG	4 cut(s)	471, 764, 914, 934
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	2 cut(s)	499, 688
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	6 cut(s)	75, 416, 525, 546, 839, 1229
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	4 cut(s)	471, 764, 914, 934
Tth111I	GACNNNGTC	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	760
VspI	ATTAAT	1 cut(s)	978
XapI	RAATTY	2 cut(s)	512, 534
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	2 cut(s)	695, 895
XmnI	GAANNNNTTC	1 cut(s)	1313
XspI	CTAG	2 cut(s)	1172, 1191
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.