RchiOBHm_Chr7g0219251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018178
Physical Location & Seq
Forward (+)
37588612 .. 37589726
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19623

Sequence Viewer

Length: 747 bp
ATGTTCCACTATATAATTGTGCATTTTTGGATTGGAAATGCTCATGGCGGTGTTGTTGCCACAAACCCAATTCAAGCATCGGTTGGAAATGCGCATGGCGGTGTTGCTGCTACAAACCCAATTCAAGCATCGTTTGGAAAATTGGTCAACAAAGACAATGCCATAAAGGTTGAAAAGCTCCGCCCAGACATGTCGGATGTCACTCTCACTGTAAAGGTTGTTAGTACTAAGATAGTAGGTATTCAATTTGCTGAGTGCTTGGTTGGCGATGAAACTGGAATGATAATCTTCAGAGCTACAAACGATCAAGTGGACTTGATGAAAGTGAGTTTGACTGTAACTCTGCAAAATGCCAAAGTTGACATGTTCAAAGATTCAATGAGGCTTGTTGTCGACGAAAGTGGCAGTGTTCAAGTTGCTGAGCCTGCCGGTTTTACTGTGAAGGAAGATAGCAACCTCTCACTCATTCAAGCATCATTTGGAAATGTCAACAAAGACCAAAAAAAGGAGGGGCCACGTGAACTGGAGGTGTACGAGCAGGGTATGCCCAAGACTCAGCTTTGCTTGAATTGGCAGGACTCTGGTTACTGCCGTTGCAAAGACCACTGCAAATTTGCTCACGGCATGGAGGAGCTGCGCCCGGTGAATCGCCACCCGCTCTACAAGACCAAGGTCTGCAAATATTGGCTTGCCGGTGTGCCCTGTGGATTCGGCCATCGCTGCCATTTTCGCCACACACTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.49

Weight (kDa)

8.37

Isoelectric Point (pI)

19.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_Ssb-like PF21473 60 - 139 4.4e-25 Single-stranded DNA binding protein Ssb-like, OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018178)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442351 RchiOBHm_Chr7g0219251
rosa_laevigata RLG00000006016
rosa_multiflora Rmu_co8418355.1_g000001 Rmu_sc0000124.1_g000049
rosa_roxburghii Rroxscaffold_5G00383220
rosa_rugosa Rorug04G0340500
rosa_samantha Rh4AG392200 Rh4BG405700 Rh4CG420800 Rh4DG398900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 658
AccI GTMKAC 1 cut(s) 393
AciI CCGC 4 cut(s) 48, 99, 181, 656
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 274
AcvI CACGTG 1 cut(s) 518
AfaI GTAC 2 cut(s) 226, 533
AfiI CCNNNNNNNGG 1 cut(s) 505
AflIII ACRYGT 2 cut(s) 189, 363
AgsI TTSAA 9 cut(s) 74, 125, 173, 245, 370, 378, 413, 470, 568
AluBI AGCT 4 cut(s) 178, 296, 559, 634
AluI AGCT 4 cut(s) 178, 296, 559, 634
AoxI GGCC 2 cut(s) 512, 712
ApeKI GCWGC 3 cut(s) 107, 634, 720
ApoI RAATTY 1 cut(s) 611
AspLEI GCGC 2 cut(s) 94, 639
AspS9I GGNCC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 1 cut(s) 655
BaeGI GKGCMC 1 cut(s) 702
BbrPI CACGTG 1 cut(s) 518
BbvI GCAGC 3 cut(s) 94, 621, 707
BccI CCATC 1 cut(s) 723
BceAI ACGGC 2 cut(s) 576, 637
BcnI CCSGG 1 cut(s) 641
BisI GCNGC 3 cut(s) 108, 635, 721
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 3 cut(s) 109, 636, 722
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 3 cut(s) 86, 137, 482
BoxI GACNNNNGTC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 545
Bpu1102I GCTNAGC 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 641
BsaAI YACGTR 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 669
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 2 cut(s) 428, 692
Bse1I ACTGG 2 cut(s) 280, 528
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 3 cut(s) 243, 411, 569
BseNI ACTGG 2 cut(s) 280, 528
BseRI GAGGAG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 3 cut(s) 94, 621, 707
BshFI GGCC 2 cut(s) 514, 714
BsiSI CCGG 3 cut(s) 429, 641, 693
BslI CCNNNNNNNGG 1 cut(s) 505
BsnI GGCC 2 cut(s) 514, 714
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 1 cut(s) 304
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 4 cut(s) 48, 99, 181, 656
BspANI GGCC 2 cut(s) 514, 714
BspCNI CTCAG 3 cut(s) 244, 412, 568
BspLI GGNNCC 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 658
BsrFI RCCGGY 2 cut(s) 428, 692
BsrI ACTGG 2 cut(s) 280, 528
BssAI RCCGGY 2 cut(s) 428, 692
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 669
Bst4CI ACNGT 3 cut(s) 211, 337, 439
BstAPI GCANNNNNTGC 1 cut(s) 544
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 426, 690
BstDEI CTNAG 4 cut(s) 228, 252, 420, 555
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 2 cut(s) 94, 639
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 264, 425, 544, 720, 729
BstNSI RCATGY 2 cut(s) 193, 367
BstPAI GACNNNNGTC 1 cut(s) 671
BstSCI CCNGG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 94, 621, 707
BsuRI GGCC 2 cut(s) 514, 714
BtgZI GCGATG 2 cut(s) 282, 701
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 2 cut(s) 412, 604
BtsIMutI CAGTG 3 cut(s) 207, 412, 604
Cac8I GCNNGC 2 cut(s) 426, 690
CfoI GCGC 2 cut(s) 94, 639
Cfr10I RCCGGY 2 cut(s) 428, 692
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 2 cut(s) 225, 532
CviAII CATG 5 cut(s) 44, 95, 190, 364, 625
CviJI RGCY 9 cut(s) 178, 296, 385, 424, 514, 559, 634, 688, 714
CviKI_1 RGCY 9 cut(s) 178, 296, 385, 424, 514, 559, 634, 688, 714
CviQI GTAC 2 cut(s) 225, 532
DdeI CTNAG 4 cut(s) 228, 252, 420, 555
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 712
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 669
Eco57I CTGAAG 1 cut(s) 274
Eco72I CACGTG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 5 cut(s) 47, 98, 193, 367, 628
FaiI YATR 9 cut(s) 12, 14, 45, 96, 164, 191, 365, 545, 626
FatI CATG 5 cut(s) 43, 94, 189, 363, 624
FauI CCCGC 1 cut(s) 663
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 108, 635, 721
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 108, 635, 721
FspAI RTGCGCAY 1 cut(s) 93
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 2 cut(s) 93, 638
GluI GCNGC 3 cut(s) 108, 635, 721
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 2 cut(s) 514, 714
HapII CCGG 3 cut(s) 429, 641, 693
HhaI GCGC 2 cut(s) 94, 639
Hin1II CATG 5 cut(s) 47, 98, 193, 367, 628
Hin6I GCGC 2 cut(s) 92, 637
HinP1I GCGC 2 cut(s) 92, 637
HincII GTYRAC 4 cut(s) 148, 361, 394, 490
HindII GTYRAC 4 cut(s) 148, 361, 394, 490
HinfI GANTC 5 cut(s) 374, 553, 578, 646, 708
HpaII CCGG 3 cut(s) 429, 641, 693
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 7 cut(s) 148, 313, 361, 394, 490, 521, 532
Hpy188I TCNGA 2 cut(s) 196, 293
Hpy8I GTNNAC 7 cut(s) 148, 313, 361, 394, 490, 521, 532
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 3 cut(s) 211, 337, 439
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 5 cut(s) 22, 346, 597, 609, 678
HpyF10VI GCNNNNNNNGC 5 cut(s) 264, 425, 544, 720, 729
HpyF3I CTNAG 4 cut(s) 228, 252, 420, 555
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 5 cut(s) 47, 98, 193, 367, 628
HspAI GCGC 2 cut(s) 92, 637
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 183, 631
Lsp1109I GCAGC 3 cut(s) 94, 621, 707
LweI GCATC 3 cut(s) 86, 137, 482
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 3 cut(s) 199, 337, 584
MalI GATC 1 cut(s) 306
MbiI CCGCTC 1 cut(s) 658
MboI GATC 1 cut(s) 304
MboII GAAGA 2 cut(s) 280, 458
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 7 cut(s) 15, 69, 120, 140, 245, 568, 611
MlyI GAGTC 2 cut(s) 547, 572
MmeI TCCRAC 2 cut(s) 64, 174
MnlI CCTC 5 cut(s) 375, 467, 502, 520, 622
MslI CAYNNNNRTG 2 cut(s) 48, 99
MspI CCGG 3 cut(s) 429, 641, 693
MspR9I CCNGG 1 cut(s) 641
MwoI GCNNNNNNNGC 5 cut(s) 264, 425, 544, 720, 729
NciI CCSGG 1 cut(s) 641
NdeII GATC 1 cut(s) 304
NlaIII CATG 5 cut(s) 47, 98, 193, 367, 628
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 93
NspI RCATGY 2 cut(s) 193, 367
PciI ACATGT 2 cut(s) 189, 363
PfeI GAWTC 3 cut(s) 374, 646, 708
PkrI GCNGC 3 cut(s) 109, 636, 722
PleI GAGTC 2 cut(s) 547, 572
PmaCI CACGTG 1 cut(s) 518
PmlI CACGTG 1 cut(s) 518
PpsI GAGTC 2 cut(s) 547, 572
Ppu21I YACGTR 1 cut(s) 518
PscI ACATGT 2 cut(s) 189, 363
PshAI GACNNNNGTC 1 cut(s) 671
PspCI CACGTG 1 cut(s) 518
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 512
RsaI GTAC 2 cut(s) 226, 533
RsaNI GTAC 2 cut(s) 225, 532
RseI CAYNNNNRTG 2 cut(s) 48, 99
SalI GTCGAC 1 cut(s) 392
SatI GCNGC 3 cut(s) 108, 635, 721
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 512
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 2 cut(s) 547, 572
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 3 cut(s) 86, 137, 482
SmiMI CAYNNNNRTG 2 cut(s) 48, 99
Sse9I AATT 7 cut(s) 15, 69, 120, 140, 245, 568, 611
SsiI CCGC 4 cut(s) 48, 99, 181, 656
SspI AATATT 1 cut(s) 683
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 211, 337, 439
TaiI ACGT 1 cut(s) 520
TaqI TCGA 1 cut(s) 393
TasI AATT 7 cut(s) 15, 69, 120, 140, 245, 568, 611
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 3 cut(s) 374, 646, 708
TscAI CASTG 3 cut(s) 214, 412, 611
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 3 cut(s) 107, 634, 720
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 285, 335
TspRI CASTG 3 cut(s) 214, 412, 611
XapI RAATTY 1 cut(s) 611
XceI RCATGY 2 cut(s) 193, 367
XmiI GTMKAC 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.