Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8418355.1

Orthogroup ID

OG0018178

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 688

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8418355.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ggttttactgtgaaggaagatagcaacctctcactcattcaagcatcatttggaaatgtcaacaaagaccaaaaaaaggaggggccacgtgaactggaggtgtacgagcagggtatgcccaagactgagctttgcttgaattggcaggactctggttactgccgttgcaaagaccactgcaaatttgctcacggcatggaggagctgcgcccggtgaatcgccacccgctctacaagaccgagatctgccaatattggcttgccggtttgccctgtggattcggccgtcgctgccattttcgccacacactcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

105

Amino Acids

12.22

Weight (kDa)

8.22

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018178)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442351 RchiOBHm_Chr7g0219251
rosa_laevigata	RLG00000006016
rosa_multiflora	Rmu_co8418355.1_g000001 Rmu_sc0000124.1_g000049
rosa_roxburghii	Rroxscaffold_5G00383220
rosa_rugosa	Rorug04G0340500
rosa_samantha	Rh4AG392200 Rh4BG405700 Rh4CG420800 Rh4DG398900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	229
AciI	CCGC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	182
AcvI	CACGTG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	41, 139
AluBI	AGCT	2 cut(s)	130, 205
AluI	AGCT	2 cut(s)	130, 205
AoxI	GGCC	2 cut(s)	83, 283
ApeKI	GCWGC	2 cut(s)	205, 291
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	226
BbrPI	CACGTG	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	192, 278
BceAI	ACGGC	3 cut(s)	147, 208, 270
BcnI	CCSGG	1 cut(s)	212
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	2 cut(s)	206, 292
BlsI	GCNGC	2 cut(s)	207, 293
Bme1390I	CCNGG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	215
BseX3I	CGGCCG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	192, 278
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	85, 285
BsiEI	CGRYCG	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	212, 264
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	2 cut(s)	85, 285
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	85, 285
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	99
BssAI	RCCGGY	1 cut(s)	263
BssMI	GATC	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 291, 300
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	192, 278
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	85, 285
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	5 cut(s)	85, 130, 205, 259, 285
CviKI_1	RGCY	5 cut(s)	85, 130, 205, 259, 285
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	283
Eco52I	CGGCCG	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	89
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	116, 197
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	206, 292
Fsp4HI	GCNGC	2 cut(s)	206, 292
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	2 cut(s)	206, 292
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	85, 285
HapII	CCGG	2 cut(s)	212, 264
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	149, 217, 279
HpaII	CCGG	2 cut(s)	212, 264
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	61, 92, 103
Hpy8I	GTNNAC	3 cut(s)	61, 92, 103
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	2 cut(s)	168, 180
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 291, 300
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	80, 95, 131, 138, 225, 277, 286
Lsp1109I	GCAGC	2 cut(s)	192, 278
LweI	GCATC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	245
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	2 cut(s)	139, 182
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	38, 73, 91, 193
MspI	CCGG	2 cut(s)	212, 264
MspR9I	CCNGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	115, 291, 300
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	217, 279
PkrI	GCNGC	2 cut(s)	207, 293
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	89
PspCI	CACGTG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	2 cut(s)	206, 292
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	5 cut(s)	30, 91, 102, 132, 207
SfaNI	GCATC	1 cut(s)	53
Sse9I	AATT	2 cut(s)	139, 182
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	91
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	139, 182
TfiI	GAWTC	2 cut(s)	217, 279
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	2 cut(s)	205, 291
TspRI	CASTG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.