Rh4DG398900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018178
Physical Location & Seq
Reverse (-)
61529226 .. 61532033
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG398900.1

Sequence Viewer

Length: 963 bp
ATGGCGAAGCAGCCACCCATAGGGCCAAAGCGTCCGGACCAGGCCCAGAACAAGAAGGGCCAGCCTTCCAATTGGGTCTCCGGGACAGATCCCTCAGACGCGTCGCGAAGATGGATGGGAGTGGGCCCATTCGATGTTTGCTCCTACGTCAGCCAAATCCCAAGCGGGGGGAGCTTCTTCACCAACGAGGTCCAACTTCATGTGGGTCTGCGAAACGACGACCAGATTGGAAATGCTCATGGCGGTGTTGTTGCCACAAACCCAATTCAAGCATTGGTTGGAAATGCTCATGGAGGAGGCTCCGGCGCTACAAACCCAATTCAAGCATCGGTTGGAAATGCTCATGGCGGTGTTGCTGCTACAAACCCAATTCAAGAATCGTTTGGAAAATTGGTCAACAAAGACAATGCCACAAAGGTTGAAAAGCTCCGCCCAGACATGTCGGATGTCACTCTCACTGTAAAGGTTGTTAGTACTACGATAGTAGGTCGGAAGGGACGTCCTGGTGGCCCTCGAAGCCACATGCAATTTGCTGACTGCTTGGTTGGCGATGAAACTGGAGTGATAATCTTCAGAGCTACAAACGATCAAGTGGACTTGATGAAAGTGGGTTTGACTGTAACTCTGCAAAATGCCAAAGTTGACATGTTCAAAGATTCAATGAGGCTTGTTGTCGACAAAAGTGGCAGTGTTCTAGTTGCTGAGCCGGCCAGTTTTACTGTGAAGGAAGATAGCAACCTCTCACTCATTCAAGCATCGATTGGAAATGTCAACAAAGATAATGCCATAAAGGTTGAAAAGCTCCGCCCAGACATGTCGGATGTCACTCTCACTGTAAAGGTTGTTAGTACTAAGATAGTAGGTATTCAATTTGCTGAGTGCTTGGTTGGCGATGAAACTGGAATGATAGTCTTCAGAGCTACAAACGATCAAGGTGAGTCAGAGATCATGACTTTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

33.88

Weight (kDa)

6.53

Isoelectric Point (pI)

24.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_Ssb-like PF21473 143 - 231 2.6e-31 Single-stranded DNA binding protein Ssb-like, OB fold
OB_Ssb-like PF21473 268 - 313 6.6e-07 Single-stranded DNA binding protein Ssb-like, OB fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018178)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442351 RchiOBHm_Chr7g0219251
rosa_laevigata RLG00000006016
rosa_multiflora Rmu_co8418355.1_g000001 Rmu_sc0000124.1_g000049
rosa_roxburghii Rroxscaffold_5G00383220
rosa_rugosa Rorug04G0340500
rosa_samantha Rh4AG392200 Rh4BG405700 Rh4CG420800 Rh4DG398900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 502
AccI GTMKAC 1 cut(s) 675
AccII CGCG 2 cut(s) 101, 106
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 5 cut(s) 165, 243, 348, 430, 805
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 708
AcuI CTGAAG 2 cut(s) 556, 898
AcyI GRCGYC 1 cut(s) 499
AfaI GTAC 2 cut(s) 475, 850
AfiI CCNNNNNNNGG 3 cut(s) 20, 166, 167
AflIII ACRYGT 4 cut(s) 99, 438, 645, 813
AgsI TTSAA 9 cut(s) 269, 323, 374, 422, 652, 660, 752, 797, 869
AjnI CCWGG 2 cut(s) 39, 502
AluBI AGCT 5 cut(s) 174, 427, 578, 802, 920
AluI AGCT 5 cut(s) 174, 427, 578, 802, 920
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 6 cut(s) 23, 42, 58, 124, 508, 708
ApaI GGGCCC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 10, 356
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 8 cut(s) 23, 37, 43, 58, 124, 125, 190, 509
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 172, 947
AvaII GGWCC 2 cut(s) 37, 190
BaeGI GKGCMC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 904
BbvI GCAGC 2 cut(s) 22, 343
BccI CCATC 2 cut(s) 105, 109
BciT130I CCWGG 2 cut(s) 41, 504
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 309
BisI GCNGC 2 cut(s) 11, 357
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 2 cut(s) 12, 358
BmcAI AGTACT 2 cut(s) 475, 850
Bme1390I CCNGG 3 cut(s) 41, 82, 504
Bme18I GGWCC 2 cut(s) 37, 190
BmgT120I GGNCC 8 cut(s) 23, 37, 43, 58, 124, 125, 190, 509
BmiI GGNNCC 2 cut(s) 126, 301
BmrFI CCNGG 3 cut(s) 41, 82, 504
BmsI GCATC 2 cut(s) 335, 764
BpiI GAAGAC 1 cut(s) 904
BpmI CTGGAG 1 cut(s) 579
Bpu1102I GCTNAGC 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 758
BsaHI GRCGYC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 166, 167
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 3 cut(s) 562, 711, 904
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 2 cut(s) 41, 504
BseCI ATCGAT 1 cut(s) 758
BseGI GGATG 3 cut(s) 120, 451, 826
BseLI CCNNNNNNNGG 3 cut(s) 20, 166, 167
BseMII CTCAG 3 cut(s) 108, 693, 867
BseNI ACTGG 3 cut(s) 562, 711, 904
BseRI GAGGAG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 128
BseXI GCAGC 2 cut(s) 22, 343
Bsh1236I CGCG 2 cut(s) 101, 106
BshFI GGCC 6 cut(s) 25, 44, 60, 126, 510, 710
BshVI ATCGAT 1 cut(s) 758
BsiSI CCGG 4 cut(s) 35, 81, 303, 707
BslFI GGGAC 2 cut(s) 97, 510
BslI CCNNNNNNNGG 3 cut(s) 20, 166, 167
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 97, 510
BsnI GGCC 6 cut(s) 25, 44, 60, 126, 510, 710
Bso31I GGTCTC 1 cut(s) 82
Bsp120I GGGCCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 128
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 4 cut(s) 88, 586, 928, 945
Bsp1720I GCTNAGC 1 cut(s) 702
Bsp68I TCGCGA 1 cut(s) 106
BspACI CCGC 5 cut(s) 165, 243, 348, 430, 805
BspANI GGCC 6 cut(s) 25, 44, 60, 126, 510, 710
BspCNI CTCAG 3 cut(s) 107, 694, 868
BspDI ATCGAT 1 cut(s) 758
BspEI TCCGGA 1 cut(s) 34
BspFNI CGCG 2 cut(s) 101, 106
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 2 cut(s) 126, 301
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 706
BsrI ACTGG 3 cut(s) 562, 711, 904
BssAI RCCGGY 1 cut(s) 706
BssMI GATC 4 cut(s) 88, 586, 928, 945
BssNI GRCGYC 1 cut(s) 499
Bst2UI CCWGG 2 cut(s) 41, 504
Bst4CI ACNGT 4 cut(s) 460, 619, 721, 835
BstACI GRCGYC 1 cut(s) 499
BstC8I GCNNGC 2 cut(s) 62, 708
BstDEI CTNAG 4 cut(s) 94, 702, 852, 876
BstF5I GGATG 3 cut(s) 120, 451, 826
BstFNI CGCG 2 cut(s) 101, 106
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 4 cut(s) 91, 589, 931, 948
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 88, 586, 928, 945
BstMWI GCNNNNNNNGC 5 cut(s) 171, 516, 546, 707, 888
BstNI CCWGG 2 cut(s) 41, 504
BstNSI RCATGY 4 cut(s) 442, 526, 649, 817
BstSCI CCNGG 3 cut(s) 39, 80, 502
BstSLI GKGCMC 1 cut(s) 128
BstUI CGCG 2 cut(s) 101, 106
BstV1I GCAGC 2 cut(s) 22, 343
BstV2I GAAGAC 1 cut(s) 904
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 758
BsuRI GGCC 6 cut(s) 25, 44, 60, 126, 510, 710
BsuTUI ATCGAT 1 cut(s) 758
BtgZI GCGATG 2 cut(s) 564, 906
BtsCI GGATG 3 cut(s) 120, 451, 826
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 3 cut(s) 456, 694, 831
BtuMI TCGCGA 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 62, 708
CciI TCATGA 1 cut(s) 948
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 706
Cfr13I GGNCC 8 cut(s) 23, 37, 43, 58, 124, 125, 190, 509
ClaI ATCGAT 1 cut(s) 758
CseI GACGC 3 cut(s) 20, 90, 107
Csp6I GTAC 2 cut(s) 474, 849
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 9 cut(s) 200, 239, 290, 344, 439, 523, 646, 814, 949
CviQI GTAC 2 cut(s) 474, 849
DdeI CTNAG 4 cut(s) 94, 702, 852, 876
DpnI GATC 4 cut(s) 90, 588, 930, 947
DpnII GATC 4 cut(s) 88, 586, 928, 945
EaeI YGGCCR 1 cut(s) 708
EciI GGCGGA 2 cut(s) 419, 794
Eco24I GRGCYC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 37, 190
Eco57I CTGAAG 2 cut(s) 556, 898
EcoRII CCWGG 2 cut(s) 39, 502
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 9 cut(s) 203, 242, 293, 347, 442, 526, 649, 817, 952
FaqI GGGAC 2 cut(s) 97, 510
FatI CATG 9 cut(s) 199, 238, 289, 343, 438, 522, 645, 813, 948
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 2 cut(s) 11, 357
FokI GGATG 3 cut(s) 127, 458, 833
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 11, 357
FspBI CTAG 1 cut(s) 695
GlaI GCGC 1 cut(s) 307
GluI GCNGC 2 cut(s) 11, 357
GsuI CTGGAG 1 cut(s) 579
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 6 cut(s) 25, 44, 60, 126, 510, 710
HapII CCGG 4 cut(s) 35, 81, 303, 707
HgaI GACGC 3 cut(s) 20, 90, 107
HhaI GCGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 9 cut(s) 203, 242, 293, 347, 442, 526, 649, 817, 952
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 4 cut(s) 397, 643, 676, 772
HindII GTYRAC 4 cut(s) 397, 643, 676, 772
HinfI GANTC 3 cut(s) 377, 656, 938
HpaII CCGG 4 cut(s) 35, 81, 303, 707
HphI GGTGA 2 cut(s) 172, 947
Hpy166II GTNNAC 5 cut(s) 397, 595, 643, 676, 772
Hpy188I TCNGA 7 cut(s) 97, 445, 492, 575, 820, 917, 943
Hpy188III TCNNGA 4 cut(s) 35, 105, 374, 949
Hpy8I GTNNAC 5 cut(s) 397, 595, 643, 676, 772
Hpy99I CGWCG 2 cut(s) 106, 221
HpyAV CCTTC 4 cut(s) 49, 75, 487, 718
HpyCH4III ACNGT 4 cut(s) 460, 619, 721, 835
HpyCH4IV ACGT 2 cut(s) 147, 499
HpyCH4V TGCA 2 cut(s) 526, 628
HpyF10VI GCNNNNNNNGC 5 cut(s) 171, 516, 546, 707, 888
HpyF3I CTNAG 4 cut(s) 94, 702, 852, 876
HpySE526I ACGT 2 cut(s) 147, 499
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 9 cut(s) 203, 242, 293, 347, 442, 526, 649, 817, 952
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 34
KroI GCCGGC 1 cut(s) 706
KroNI GCCGGC 1 cut(s) 708
Kzo9I GATC 4 cut(s) 88, 586, 928, 945
LmnI GCTCC 5 cut(s) 146, 171, 305, 432, 807
Lsp1109I GCAGC 2 cut(s) 22, 343
LweI GCATC 2 cut(s) 335, 764
MaeI CTAG 1 cut(s) 695
MaeII ACGT 2 cut(s) 147, 499
MaeIII GTNAC 3 cut(s) 448, 619, 823
MalI GATC 4 cut(s) 90, 588, 930, 947
MboI GATC 4 cut(s) 88, 586, 928, 945
MboII GAAGA 5 cut(s) 120, 169, 562, 740, 904
MfeI CAATTG 1 cut(s) 70
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 7 cut(s) 70, 264, 318, 369, 389, 527, 869
MluI ACGCGT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 947
MmeI TCCRAC 6 cut(s) 217, 259, 313, 423, 470, 798
MnlI CCTC 7 cut(s) 103, 181, 287, 290, 522, 657, 749
MroI TCCGGA 1 cut(s) 34
MroNI GCCGGC 1 cut(s) 706
MslI CAYNNNNRTG 2 cut(s) 243, 348
MspI CCGG 4 cut(s) 35, 81, 303, 707
MspR9I CCNGG 3 cut(s) 41, 82, 504
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 2 cut(s) 41, 504
MvnI CGCG 2 cut(s) 101, 106
MwoI GCNNNNNNNGC 5 cut(s) 171, 516, 546, 707, 888
NaeI GCCGGC 1 cut(s) 708
NciI CCSGG 1 cut(s) 82
NdeII GATC 4 cut(s) 88, 586, 928, 945
NgoMIV GCCGGC 1 cut(s) 706
NlaIII CATG 9 cut(s) 203, 242, 293, 347, 442, 526, 649, 817, 952
NlaIV GGNNCC 2 cut(s) 126, 301
NmuCI GTSAC 2 cut(s) 448, 823
NruI TCGCGA 1 cut(s) 106
NspI RCATGY 4 cut(s) 442, 526, 649, 817
PagI TCATGA 1 cut(s) 948
PciI ACATGT 3 cut(s) 438, 645, 813
PcsI WCGNNNNNNNCGW 1 cut(s) 496
PdiI GCCGGC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 377, 656
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 2 cut(s) 12, 358
PleI GAGTC 1 cut(s) 946
PpsI GAGTC 1 cut(s) 946
PscI ACATGT 3 cut(s) 438, 645, 813
Psp6I CCWGG 2 cut(s) 39, 502
PspGI CCWGG 2 cut(s) 39, 502
PspN4I GGNNCC 2 cut(s) 126, 301
PspOMI GGGCCC 1 cut(s) 124
PspPI GGNCC 8 cut(s) 23, 37, 43, 58, 124, 125, 190, 509
PsuI RGATCY 1 cut(s) 88
RruI TCGCGA 1 cut(s) 106
RsaI GTAC 2 cut(s) 475, 850
RsaNI GTAC 2 cut(s) 474, 849
RseI CAYNNNNRTG 2 cut(s) 243, 348
SalI GTCGAC 1 cut(s) 674
SatI GCNGC 2 cut(s) 11, 357
Sau3AI GATC 4 cut(s) 88, 586, 928, 945
Sau96I GGNCC 8 cut(s) 23, 37, 43, 58, 124, 125, 190, 509
ScaI AGTACT 2 cut(s) 475, 850
SchI GAGTC 1 cut(s) 947
ScrFI CCNGG 3 cut(s) 41, 82, 504
SduI GDGCHC 1 cut(s) 128
SfaNI GCATC 2 cut(s) 335, 764
SinI GGWCC 2 cut(s) 37, 190
SmiMI CAYNNNNRTG 2 cut(s) 243, 348
Sse9I AATT 7 cut(s) 70, 264, 318, 369, 389, 527, 869
SsiI CCGC 5 cut(s) 165, 243, 348, 430, 805
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 3 cut(s) 39, 80, 502
TaaI ACNGT 4 cut(s) 460, 619, 721, 835
TaiI ACGT 2 cut(s) 150, 502
TaqI TCGA 4 cut(s) 132, 514, 675, 758
TasI AATT 7 cut(s) 70, 264, 318, 369, 389, 527, 869
TatI WGTACW 2 cut(s) 473, 848
TfiI GAWTC 2 cut(s) 377, 656
TscAI CASTG 3 cut(s) 463, 694, 838
TseFI GTSAC 2 cut(s) 448, 823
TseI GCWGC 2 cut(s) 10, 356
Tsp45I GTSAC 2 cut(s) 448, 823
TspDTI ATGAA 4 cut(s) 188, 567, 617, 909
TspRI CASTG 3 cut(s) 463, 694, 838
VpaK11BI GGWCC 2 cut(s) 37, 190
XceI RCATGY 4 cut(s) 442, 526, 649, 817
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 1 cut(s) 695
ZraI GACGTC 1 cut(s) 500
ZrmI AGTACT 2 cut(s) 475, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.