Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14730 |
| malus_domestica | MD05G1289700.v1.1 |
| prunus_persica | Prupe.4G076000_v2.0.a1 |
| pyrus_communis | pycom05g26680 |
| rosa_chinensis | RchiOBHm_Chr7g0219901 |
| rosa_laevigata | RLG00000009523 RLG00000031996 |
| rosa_multiflora | Rmu_sc0004521.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00063400 |
| rosa_rugosa | Rorug05G0007900 |
| rosa_samantha | Rh4BG067800 Rh4CG075700 Rh5AG101900 Rh5AG102300 Rh5BG098600 Rh5CG110800 Rh5DG097900 |
| rosa_wichuraiana | Rw5G008930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 900 |
| AciI | CCGC | 1 cut(s) | 4 |
| AcyI | GRCGYC | 1 cut(s) | 897 |
| AfaI | GTAC | 1 cut(s) | 69 |
| AflIII | ACRYGT | 1 cut(s) | 453 |
| AgsI | TTSAA | 3 cut(s) | 82, 406, 438 |
| AluBI | AGCT | 4 cut(s) | 56, 472, 586, 671 |
| AluI | AGCT | 4 cut(s) | 56, 472, 586, 671 |
| Alw26I | GTCTC | 2 cut(s) | 663, 961 |
| ApeKI | GCWGC | 2 cut(s) | 668, 927 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 887, 919 |
| AsuHPI | GGTGA | 3 cut(s) | 157, 311, 640 |
| BaeGI | GKGCMC | 1 cut(s) | 880 |
| BbvI | GCAGC | 2 cut(s) | 680, 939 |
| BccI | CCATC | 2 cut(s) | 355, 641 |
| BceAI | ACGGC | 1 cut(s) | 847 |
| BclI | TGATCA | 1 cut(s) | 810 |
| BcoDI | GTCTC | 2 cut(s) | 663, 961 |
| BfaI | CTAG | 3 cut(s) | 210, 318, 665 |
| BisI | GCNGC | 2 cut(s) | 669, 928 |
| BlsI | GCNGC | 2 cut(s) | 670, 929 |
| BmrI | ACTGGG | 1 cut(s) | 345 |
| BmsI | GCATC | 1 cut(s) | 472 |
| BmuI | ACTGGG | 1 cut(s) | 345 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 1 cut(s) | 566 |
| BsaHI | GRCGYC | 1 cut(s) | 897 |
| BsaI | GGTCTC | 1 cut(s) | 663 |
| Bse1I | ACTGG | 2 cut(s) | 75, 340 |
| Bse3DI | GCAATG | 3 cut(s) | 240, 552, 841 |
| BseGI | GGATG | 3 cut(s) | 88, 266, 733 |
| BseMI | GCAATG | 3 cut(s) | 240, 552, 841 |
| BseNI | ACTGG | 2 cut(s) | 75, 340 |
| BseRI | GAGGAG | 2 cut(s) | 191, 212 |
| BseSI | GKGCMC | 1 cut(s) | 880 |
| BseXI | GCAGC | 2 cut(s) | 680, 939 |
| BseYI | CCCAGC | 1 cut(s) | 608 |
| BsmAI | GTCTC | 2 cut(s) | 663, 961 |
| BsmI | GAATGC | 1 cut(s) | 235 |
| Bso31I | GGTCTC | 1 cut(s) | 663 |
| Bsp1286I | GDGCHC | 1 cut(s) | 880 |
| Bsp143I | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| BspACI | CCGC | 1 cut(s) | 4 |
| BspHI | TCATGA | 2 cut(s) | 568, 807 |
| BspTNI | GGTCTC | 1 cut(s) | 663 |
| BsrDI | GCAATG | 3 cut(s) | 240, 552, 841 |
| BsrI | ACTGG | 2 cut(s) | 75, 340 |
| BssMI | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| BssNI | GRCGYC | 1 cut(s) | 897 |
| Bst4CI | ACNGT | 2 cut(s) | 331, 558 |
| BstACI | GRCGYC | 1 cut(s) | 897 |
| BstC8I | GCNNGC | 3 cut(s) | 470, 827, 925 |
| BstDEI | CTNAG | 1 cut(s) | 94 |
| BstEII | GGTNACC | 1 cut(s) | 628 |
| BstF5I | GGATG | 3 cut(s) | 88, 266, 733 |
| BstKTI | GATC | 5 cut(s) | 351, 450, 625, 774, 813 |
| BstMAI | GTCTC | 2 cut(s) | 663, 961 |
| BstMBI | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 831, 845 |
| BstNSI | RCATGY | 6 cut(s) | 457, 784, 829, 871, 927, 1033 |
| BstPI | GGTNACC | 1 cut(s) | 628 |
| BstSLI | GKGCMC | 1 cut(s) | 880 |
| BstV1I | GCAGC | 2 cut(s) | 680, 939 |
| BtsCI | GGATG | 3 cut(s) | 88, 266, 733 |
| BtsI | GCAGTG | 1 cut(s) | 393 |
| BtsIMutI | CAGTG | 2 cut(s) | 393, 563 |
| Cac8I | GCNNGC | 3 cut(s) | 470, 827, 925 |
| CciI | TCATGA | 2 cut(s) | 568, 807 |
| Csp6I | GTAC | 1 cut(s) | 68 |
| CviJI | RGCY | 7 cut(s) | 56, 86, 275, 472, 586, 671, 930 |
| CviKI_1 | RGCY | 7 cut(s) | 56, 86, 275, 472, 586, 671, 930 |
| CviQI | GTAC | 1 cut(s) | 68 |
| DdeI | CTNAG | 1 cut(s) | 94 |
| DpnI | GATC | 5 cut(s) | 350, 449, 624, 773, 812 |
| DpnII | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| DraI | TTTAAA | 1 cut(s) | 160 |
| Eco31I | GGTCTC | 1 cut(s) | 663 |
| Eco91I | GGTNACC | 1 cut(s) | 628 |
| EcoO65I | GGTNACC | 1 cut(s) | 628 |
| EcoT22I | ATGCAT | 3 cut(s) | 445, 487, 552 |
| FauNDI | CATATG | 1 cut(s) | 855 |
| FbaI | TGATCA | 1 cut(s) | 810 |
| Fnu4HI | GCNGC | 2 cut(s) | 669, 928 |
| FokI | GGATG | 3 cut(s) | 75, 273, 740 |
| Fsp4HI | GCNGC | 2 cut(s) | 669, 928 |
| FspBI | CTAG | 3 cut(s) | 210, 318, 665 |
| GluI | GCNGC | 2 cut(s) | 669, 928 |
| GsaI | CCCAGC | 1 cut(s) | 612 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 897 |
| HincII | GTYRAC | 2 cut(s) | 748, 1027 |
| HindII | GTYRAC | 2 cut(s) | 748, 1027 |
| HindIII | AAGCTT | 2 cut(s) | 470, 584 |
| HinfI | GANTC | 3 cut(s) | 314, 419, 691 |
| HpaI | GTTAAC | 1 cut(s) | 748 |
| HphI | GGTGA | 3 cut(s) | 157, 311, 640 |
| Hpy166II | GTNNAC | 4 cut(s) | 33, 327, 748, 1027 |
| Hpy188I | TCNGA | 1 cut(s) | 53 |
| Hpy188III | TCNNGA | 4 cut(s) | 210, 569, 637, 808 |
| Hpy8I | GTNNAC | 4 cut(s) | 33, 327, 748, 1027 |
| HpyAV | CCTTC | 3 cut(s) | 76, 216, 944 |
| HpyCH4III | ACNGT | 2 cut(s) | 331, 558 |
| HpyCH4IV | ACGT | 2 cut(s) | 35, 897 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 831, 845 |
| HpyF3I | CTNAG | 1 cut(s) | 94 |
| HpySE526I | ACGT | 2 cut(s) | 35, 897 |
| Hsp92I | GRCGYC | 1 cut(s) | 897 |
| Ksp22I | TGATCA | 1 cut(s) | 810 |
| KspAI | GTTAAC | 1 cut(s) | 748 |
| Kzo9I | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| LpnPI | CCDG | 9 cut(s) | 36, 56, 321, 594, 611, 633, 663, 921, 1030 |
| Lsp1109I | GCAGC | 2 cut(s) | 680, 939 |
| LweI | GCATC | 1 cut(s) | 472 |
| MaeI | CTAG | 3 cut(s) | 210, 318, 665 |
| MaeII | ACGT | 2 cut(s) | 35, 897 |
| MaeIII | GTNAC | 4 cut(s) | 331, 628, 849, 898 |
| MalI | GATC | 5 cut(s) | 350, 449, 624, 773, 812 |
| MboI | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| MboII | GAAGA | 3 cut(s) | 343, 491, 752 |
| MhlI | GDGCHC | 1 cut(s) | 880 |
| MluCI | AATT | 4 cut(s) | 116, 537, 959, 993 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MmeI | TCCRAC | 2 cut(s) | 93, 1022 |
| MnlI | CCTC | 9 cut(s) | 67, 169, 172, 190, 265, 295, 424, 838, 880 |
| Mph1103I | ATGCAT | 3 cut(s) | 445, 487, 552 |
| MseI | TTAA | 5 cut(s) | 102, 159, 240, 708, 747 |
| MslI | CAYNNNNRTG | 3 cut(s) | 779, 812, 834 |
| Mva1269I | GAATGC | 1 cut(s) | 235 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 831, 845 |
| NdeI | CATATG | 1 cut(s) | 855 |
| NdeII | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| NmuCI | GTSAC | 2 cut(s) | 628, 898 |
| NsiI | ATGCAT | 3 cut(s) | 445, 487, 552 |
| NspI | RCATGY | 6 cut(s) | 457, 784, 829, 871, 927, 1033 |
| PaeI | GCATGC | 2 cut(s) | 829, 927 |
| PagI | TCATGA | 2 cut(s) | 568, 807 |
| PciI | ACATGT | 1 cut(s) | 453 |
| PctI | GAATGC | 1 cut(s) | 235 |
| PfeI | GAWTC | 2 cut(s) | 419, 691 |
| PkrI | GCNGC | 2 cut(s) | 670, 929 |
| PleI | GAGTC | 1 cut(s) | 322 |
| PpsI | GAGTC | 1 cut(s) | 322 |
| PscI | ACATGT | 1 cut(s) | 453 |
| PspEI | GGTNACC | 1 cut(s) | 628 |
| PspFI | CCCAGC | 1 cut(s) | 608 |
| RsaI | GTAC | 1 cut(s) | 69 |
| RsaNI | GTAC | 1 cut(s) | 68 |
| RseI | CAYNNNNRTG | 3 cut(s) | 779, 812, 834 |
| SaqAI | TTAA | 5 cut(s) | 102, 159, 240, 708, 747 |
| SatI | GCNGC | 2 cut(s) | 669, 928 |
| Sau3AI | GATC | 5 cut(s) | 348, 447, 622, 771, 810 |
| SchI | GAGTC | 1 cut(s) | 323 |
| SduI | GDGCHC | 1 cut(s) | 880 |
| SfaNI | GCATC | 1 cut(s) | 472 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 779, 812, 834 |
| SmlI | CTYRAG | 1 cut(s) | 581 |
| SmoI | CTYRAG | 1 cut(s) | 581 |
| SphI | GCATGC | 2 cut(s) | 829, 927 |
| Sse9I | AATT | 4 cut(s) | 116, 537, 959, 993 |
| SsiI | CCGC | 1 cut(s) | 4 |
| SspMI | CTAG | 3 cut(s) | 210, 318, 665 |
| TaaI | ACNGT | 2 cut(s) | 331, 558 |
| TaiI | ACGT | 2 cut(s) | 38, 900 |
| TaqI | TCGA | 2 cut(s) | 347, 450 |
| TasI | AATT | 4 cut(s) | 116, 537, 959, 993 |
| TfiI | GAWTC | 2 cut(s) | 419, 691 |
| Tru1I | TTAA | 5 cut(s) | 102, 159, 240, 708, 747 |
| Tru9I | TTAA | 5 cut(s) | 102, 159, 240, 708, 747 |
| TscAI | CASTG | 2 cut(s) | 393, 563 |
| TseFI | GTSAC | 2 cut(s) | 628, 898 |
| TseI | GCWGC | 2 cut(s) | 668, 927 |
| Tsp45I | GTSAC | 2 cut(s) | 628, 898 |
| TspDTI | ATGAA | 4 cut(s) | 567, 588, 683, 989 |
| TspRI | CASTG | 2 cut(s) | 393, 563 |
| XbaI | TCTAGA | 1 cut(s) | 209 |
| XceI | RCATGY | 6 cut(s) | 457, 784, 829, 871, 927, 1033 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 772 |
| XspI | CTAG | 3 cut(s) | 210, 318, 665 |
| ZraI | GACGTC | 1 cut(s) | 898 |
| Zsp2I | ATGCAT | 3 cut(s) | 445, 487, 552 |