Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14730 |
| malus_domestica | MD05G1289700.v1.1 |
| prunus_persica | Prupe.4G076000_v2.0.a1 |
| pyrus_communis | pycom05g26680 |
| rosa_chinensis | RchiOBHm_Chr7g0219901 |
| rosa_laevigata | RLG00000009523 RLG00000031996 |
| rosa_multiflora | Rmu_sc0004521.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00063400 |
| rosa_rugosa | Rorug05G0007900 |
| rosa_samantha | Rh4BG067800 Rh4CG075700 Rh5AG101900 Rh5AG102300 Rh5BG098600 Rh5CG110800 Rh5DG097900 |
| rosa_wichuraiana | Rw5G008930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 119, 383 |
| Acc36I | ACCTGC | 2 cut(s) | 119, 383 |
| AciI | CCGC | 3 cut(s) | 72, 385, 1032 |
| AclI | AACGTT | 1 cut(s) | 275 |
| AcsI | RAATTY | 2 cut(s) | 368, 542 |
| AdeI | CACNNNGTG | 2 cut(s) | 94, 304 |
| AfaI | GTAC | 3 cut(s) | 239, 450, 1166 |
| AflIII | ACRYGT | 4 cut(s) | 234, 834, 1161, 1486 |
| AgsI | TTSAA | 6 cut(s) | 368, 463, 541, 819, 1505, 1594 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1231 |
| AluBI | AGCT | 5 cut(s) | 54, 437, 967, 1481, 1572 |
| AluI | AGCT | 5 cut(s) | 54, 437, 967, 1481, 1572 |
| Alw21I | GWGCWC | 1 cut(s) | 139 |
| Alw26I | GTCTC | 2 cut(s) | 274, 1399 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 111, 716 |
| AoxI | GGCC | 1 cut(s) | 1530 |
| ApeKI | GCWGC | 2 cut(s) | 1049, 1365 |
| ApoI | RAATTY | 2 cut(s) | 368, 542 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 194 |
| AspS9I | GGNCC | 1 cut(s) | 1530 |
| AsuHPI | GGTGA | 4 cut(s) | 272, 538, 692, 1021 |
| BaeGI | GKGCMC | 1 cut(s) | 1568 |
| Bbv12I | GWGCWC | 1 cut(s) | 139 |
| BbvCI | CCTCAGC | 1 cut(s) | 104 |
| BbvI | GCAGC | 2 cut(s) | 1061, 1377 |
| BccI | CCATC | 1 cut(s) | 1022 |
| BceAI | ACGGC | 2 cut(s) | 251, 1285 |
| BclI | TGATCA | 2 cut(s) | 295, 1248 |
| BcoDI | GTCTC | 2 cut(s) | 274, 1399 |
| BfaI | CTAG | 5 cut(s) | 354, 591, 699, 1046, 1575 |
| BfuAI | ACCTGC | 2 cut(s) | 119, 383 |
| BisI | GCNGC | 2 cut(s) | 1050, 1366 |
| BlsI | GCNGC | 2 cut(s) | 1051, 1367 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1231 |
| BmgT120I | GGNCC | 1 cut(s) | 1530 |
| BmrI | ACTGGG | 1 cut(s) | 726 |
| BmsI | GCATC | 1 cut(s) | 253 |
| BmuI | ACTGGG | 1 cut(s) | 726 |
| BpmI | CTGGAG | 1 cut(s) | 473 |
| Bpu10I | CCTNAGC | 1 cut(s) | 104 |
| BpuEI | CTTGAG | 2 cut(s) | 8, 947 |
| BsaJI | CCNNGG | 2 cut(s) | 474, 1075 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 224, 254 |
| Bse1I | ACTGG | 2 cut(s) | 456, 721 |
| Bse3DI | GCAATG | 4 cut(s) | 122, 324, 621, 1279 |
| BseDI | CCNNGG | 2 cut(s) | 474, 1075 |
| BseMI | GCAATG | 4 cut(s) | 122, 324, 621, 1279 |
| BseMII | CTCAG | 3 cut(s) | 118, 166, 647 |
| BseNI | ACTGG | 2 cut(s) | 456, 721 |
| BseRI | GAGGAG | 3 cut(s) | 572, 593, 1508 |
| BseSI | GKGCMC | 1 cut(s) | 1568 |
| BseXI | GCAGC | 2 cut(s) | 1061, 1377 |
| BseYI | CCCAGC | 3 cut(s) | 329, 989, 1568 |
| BshFI | GGCC | 1 cut(s) | 1532 |
| BsiHKAI | GWGCWC | 1 cut(s) | 139 |
| BsmAI | GTCTC | 2 cut(s) | 274, 1399 |
| BsmBI | CGTCTC | 1 cut(s) | 274 |
| BsmI | GAATGC | 2 cut(s) | 387, 616 |
| BsnI | GGCC | 1 cut(s) | 1532 |
| Bsp1286I | GDGCHC | 2 cut(s) | 139, 1568 |
| Bsp1407I | TGTACA | 1 cut(s) | 1164 |
| Bsp143I | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| Bsp19I | CCATGG | 1 cut(s) | 1075 |
| BspACI | CCGC | 3 cut(s) | 72, 385, 1032 |
| BspANI | GGCC | 1 cut(s) | 1532 |
| BspCNI | CTCAG | 3 cut(s) | 117, 165, 646 |
| BspHI | TCATGA | 2 cut(s) | 949, 1245 |
| BspMI | ACCTGC | 2 cut(s) | 119, 383 |
| BsrDI | GCAATG | 4 cut(s) | 122, 324, 621, 1279 |
| BsrGI | TGTACA | 1 cut(s) | 1164 |
| BsrI | ACTGG | 2 cut(s) | 456, 721 |
| BssECI | CCNNGG | 2 cut(s) | 474, 1075 |
| BssMI | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| BssT1I | CCWWGG | 2 cut(s) | 474, 1075 |
| Bst4CI | ACNGT | 3 cut(s) | 712, 939, 1605 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 326, 1519 |
| BstAUI | TGTACA | 1 cut(s) | 1164 |
| BstC8I | GCNNGC | 6 cut(s) | 129, 139, 164, 1036, 1265, 1363 |
| BstDEI | CTNAG | 3 cut(s) | 104, 152, 633 |
| BstDSI | CCRYGG | 1 cut(s) | 1075 |
| BstEII | GGTNACC | 1 cut(s) | 1009 |
| BstKTI | GATC | 4 cut(s) | 298, 1006, 1155, 1251 |
| BstMAI | GTCTC | 2 cut(s) | 274, 1399 |
| BstMBI | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 147, 201, 317, 326, 434, 662, 1269, 1283, 1519 |
| BstPI | GGTNACC | 1 cut(s) | 1009 |
| BstSLI | GKGCMC | 1 cut(s) | 1568 |
| BstV1I | GCAGC | 2 cut(s) | 1061, 1377 |
| BsuRI | GGCC | 1 cut(s) | 1532 |
| BtgI | CCRYGG | 1 cut(s) | 1075 |
| BtsI | GCAGTG | 3 cut(s) | 336, 774, 933 |
| BtsIMutI | CAGTG | 4 cut(s) | 336, 774, 933, 944 |
| BveI | ACCTGC | 2 cut(s) | 119, 383 |
| Cac8I | GCNNGC | 6 cut(s) | 129, 139, 164, 1036, 1265, 1363 |
| CaiI | CAGNNNCTG | 2 cut(s) | 111, 716 |
| CciI | TCATGA | 2 cut(s) | 949, 1245 |
| Cfr13I | GGNCC | 1 cut(s) | 1530 |
| CseI | GACGC | 1 cut(s) | 1221 |
| Csp6I | GTAC | 3 cut(s) | 238, 449, 1165 |
| CviQI | GTAC | 3 cut(s) | 238, 449, 1165 |
| DdeI | CTNAG | 3 cut(s) | 104, 152, 633 |
| DpnI | GATC | 4 cut(s) | 297, 1005, 1154, 1250 |
| DpnII | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| DraIII | CACNNNGTG | 2 cut(s) | 94, 304 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1231 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1231 |
| Eco130I | CCWWGG | 2 cut(s) | 474, 1075 |
| Eco91I | GGTNACC | 1 cut(s) | 1009 |
| EcoO65I | GGTNACC | 1 cut(s) | 1009 |
| EcoRI | GAATTC | 1 cut(s) | 368 |
| EcoT14I | CCWWGG | 2 cut(s) | 474, 1075 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 826 |
| ErhI | CCWWGG | 2 cut(s) | 474, 1075 |
| Esp3I | CGTCTC | 1 cut(s) | 274 |
| FauI | CCCGC | 1 cut(s) | 1039 |
| FbaI | TGATCA | 2 cut(s) | 295, 1248 |
| Fnu4HI | GCNGC | 2 cut(s) | 1050, 1366 |
| Fsp4HI | GCNGC | 2 cut(s) | 1050, 1366 |
| FspBI | CTAG | 5 cut(s) | 354, 591, 699, 1046, 1575 |
| GluI | GCNGC | 2 cut(s) | 1050, 1366 |
| GsaI | CCCAGC | 3 cut(s) | 333, 993, 1572 |
| GsuI | CTGGAG | 1 cut(s) | 473 |
| HaeIII | GGCC | 1 cut(s) | 1532 |
| HgaI | GACGC | 1 cut(s) | 1221 |
| HincII | GTYRAC | 1 cut(s) | 1465 |
| HindII | GTYRAC | 1 cut(s) | 1465 |
| HindIII | AAGCTT | 1 cut(s) | 965 |
| HinfI | GANTC | 1 cut(s) | 800 |
| HphI | GGTGA | 4 cut(s) | 272, 538, 692, 1021 |
| Hpy166II | GTNNAC | 6 cut(s) | 88, 336, 414, 855, 1167, 1465 |
| Hpy188I | TCNGA | 3 cut(s) | 155, 434, 636 |
| Hpy188III | TCNNGA | 9 cut(s) | 25, 187, 591, 950, 1018, 1246, 1541, 1549, 1575 |
| Hpy8I | GTNNAC | 6 cut(s) | 88, 336, 414, 855, 1167, 1465 |
| Hpy99I | CGWCG | 1 cut(s) | 1229 |
| HpyAV | CCTTC | 8 cut(s) | 42, 46, 457, 597, 680, 889, 1099, 1382 |
| HpyCH4III | ACNGT | 3 cut(s) | 712, 939, 1605 |
| HpyCH4IV | ACGT | 3 cut(s) | 275, 416, 1227 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 147, 201, 317, 326, 434, 662, 1269, 1283, 1519 |
| HpyF3I | CTNAG | 3 cut(s) | 104, 152, 633 |
| HpySE526I | ACGT | 3 cut(s) | 275, 416, 1227 |
| Ksp22I | TGATCA | 2 cut(s) | 295, 1248 |
| Kzo9I | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| LmnI | GCTCC | 2 cut(s) | 209, 1179 |
| Lsp1109I | GCAGC | 2 cut(s) | 1061, 1377 |
| LweI | GCATC | 1 cut(s) | 253 |
| MaeI | CTAG | 5 cut(s) | 354, 591, 699, 1046, 1575 |
| MaeII | ACGT | 3 cut(s) | 275, 416, 1227 |
| MaeIII | GTNAC | 3 cut(s) | 712, 1009, 1336 |
| MalI | GATC | 4 cut(s) | 297, 1005, 1154, 1250 |
| MboI | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| MboII | GAAGA | 2 cut(s) | 724, 1133 |
| MhlI | GDGCHC | 2 cut(s) | 139, 1568 |
| MluCI | AATT | 7 cut(s) | 368, 497, 542, 918, 1397, 1431, 1505 |
| MmeI | TCCRAC | 2 cut(s) | 474, 1460 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 826 |
| MroXI | GAANNNNTTC | 1 cut(s) | 194 |
| MseI | TTAA | 4 cut(s) | 483, 621, 785, 1089 |
| MslI | CAYNNNNRTG | 5 cut(s) | 233, 1160, 1250, 1272, 1559 |
| Mva1269I | GAATGC | 2 cut(s) | 387, 616 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 147, 201, 317, 326, 434, 662, 1269, 1283, 1519 |
| NcoI | CCATGG | 1 cut(s) | 1075 |
| NdeII | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| NmuCI | GTSAC | 2 cut(s) | 1009, 1336 |
| NsiI | ATGCAT | 2 cut(s) | 6, 826 |
| PaeI | GCATGC | 2 cut(s) | 1267, 1365 |
| PagI | TCATGA | 2 cut(s) | 949, 1245 |
| PaqCI | CACCTGC | 2 cut(s) | 119, 383 |
| PciI | ACATGT | 4 cut(s) | 234, 834, 1161, 1486 |
| PctI | GAATGC | 2 cut(s) | 387, 616 |
| PdmI | GAANNNNTTC | 1 cut(s) | 194 |
| PfeI | GAWTC | 1 cut(s) | 800 |
| PkrI | GCNGC | 2 cut(s) | 1051, 1367 |
| PscI | ACATGT | 4 cut(s) | 234, 834, 1161, 1486 |
| Psp1406I | AACGTT | 1 cut(s) | 275 |
| PspEI | GGTNACC | 1 cut(s) | 1009 |
| PspFI | CCCAGC | 3 cut(s) | 329, 989, 1568 |
| PspPI | GGNCC | 1 cut(s) | 1530 |
| PstNI | CAGNNNCTG | 2 cut(s) | 111, 716 |
| RsaI | GTAC | 3 cut(s) | 239, 450, 1166 |
| RsaNI | GTAC | 3 cut(s) | 238, 449, 1165 |
| RseI | CAYNNNNRTG | 5 cut(s) | 233, 1160, 1250, 1272, 1559 |
| SaqAI | TTAA | 4 cut(s) | 483, 621, 785, 1089 |
| SatI | GCNGC | 2 cut(s) | 1050, 1366 |
| Sau3AI | GATC | 4 cut(s) | 295, 1003, 1152, 1248 |
| Sau96I | GGNCC | 1 cut(s) | 1530 |
| SduI | GDGCHC | 2 cut(s) | 139, 1568 |
| SfaNI | GCATC | 1 cut(s) | 253 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 233, 1160, 1250, 1272, 1559 |
| SmlI | CTYRAG | 2 cut(s) | 23, 962 |
| SmoI | CTYRAG | 2 cut(s) | 23, 962 |
| SphI | GCATGC | 2 cut(s) | 1267, 1365 |
| Sse9I | AATT | 7 cut(s) | 368, 497, 542, 918, 1397, 1431, 1505 |
| SsiI | CCGC | 3 cut(s) | 72, 385, 1032 |
| SspMI | CTAG | 5 cut(s) | 354, 591, 699, 1046, 1575 |
| StyI | CCWWGG | 2 cut(s) | 474, 1075 |
| TaaI | ACNGT | 3 cut(s) | 712, 939, 1605 |
| TaiI | ACGT | 3 cut(s) | 278, 419, 1230 |
| TaqI | TCGA | 1 cut(s) | 1542 |
| TasI | AATT | 7 cut(s) | 368, 497, 542, 918, 1397, 1431, 1505 |
| TatI | WGTACW | 2 cut(s) | 237, 1164 |
| TfiI | GAWTC | 1 cut(s) | 800 |
| Tru1I | TTAA | 4 cut(s) | 483, 621, 785, 1089 |
| Tru9I | TTAA | 4 cut(s) | 483, 621, 785, 1089 |
| TscAI | CASTG | 4 cut(s) | 343, 774, 933, 944 |
| TseFI | GTSAC | 2 cut(s) | 1009, 1336 |
| TseI | GCWGC | 2 cut(s) | 1049, 1365 |
| Tsp45I | GTSAC | 2 cut(s) | 1009, 1336 |
| TspDTI | ATGAA | 6 cut(s) | 458, 948, 969, 1127, 1229, 1427 |
| TspRI | CASTG | 4 cut(s) | 343, 774, 933, 944 |
| XapI | RAATTY | 2 cut(s) | 368, 542 |
| XbaI | TCTAGA | 2 cut(s) | 590, 1574 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1153 |
| XmnI | GAANNNNTTC | 1 cut(s) | 194 |
| XspI | CTAG | 5 cut(s) | 354, 591, 699, 1046, 1575 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 826 |