Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14730 |
| malus_domestica | MD05G1289700.v1.1 |
| prunus_persica | Prupe.4G076000_v2.0.a1 |
| pyrus_communis | pycom05g26680 |
| rosa_chinensis | RchiOBHm_Chr7g0219901 |
| rosa_laevigata | RLG00000009523 RLG00000031996 |
| rosa_multiflora | Rmu_sc0004521.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00063400 |
| rosa_rugosa | Rorug05G0007900 |
| rosa_samantha | Rh4BG067800 Rh4CG075700 Rh5AG101900 Rh5AG102300 Rh5BG098600 Rh5CG110800 Rh5DG097900 |
| rosa_wichuraiana | Rw5G008930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 119, 383 |
| Acc36I | ACCTGC | 2 cut(s) | 119, 383 |
| AccB1I | GGYRCC | 1 cut(s) | 1741 |
| AccI | GTMKAC | 1 cut(s) | 1570 |
| AciI | CCGC | 2 cut(s) | 72, 385 |
| AcsI | RAATTY | 3 cut(s) | 368, 542, 1582 |
| AdeI | CACNNNGTG | 2 cut(s) | 94, 304 |
| AfaI | GTAC | 4 cut(s) | 239, 974, 1166, 1878 |
| AflIII | ACRYGT | 4 cut(s) | 234, 834, 1161, 1486 |
| AgsI | TTSAA | 7 cut(s) | 368, 463, 541, 787, 819, 1505, 1768 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1231 |
| AjnI | CCWGG | 2 cut(s) | 1630, 1744 |
| AluBI | AGCT | 8 cut(s) | 54, 437, 967, 1481, 1615, 1755, 1853, 1885 |
| AluI | AGCT | 8 cut(s) | 54, 437, 967, 1481, 1615, 1755, 1853, 1885 |
| Alw21I | GWGCWC | 1 cut(s) | 139 |
| Alw26I | GTCTC | 2 cut(s) | 274, 1399 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 111 |
| AoxI | GGCC | 3 cut(s) | 1032, 1530, 1803 |
| ApaI | GGGCCC | 1 cut(s) | 1807 |
| ApeKI | GCWGC | 4 cut(s) | 1049, 1365, 1562, 1604 |
| ApoI | RAATTY | 3 cut(s) | 368, 542, 1582 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 194 |
| AspLEI | GCGC | 1 cut(s) | 565 |
| AspS9I | GGNCC | 2 cut(s) | 1803, 1804 |
| AsuHPI | GGTGA | 5 cut(s) | 272, 538, 692, 1021, 1808 |
| BaeGI | GKGCMC | 2 cut(s) | 1638, 1807 |
| BanI | GGYRCC | 1 cut(s) | 1741 |
| BanII | GRGCYC | 1 cut(s) | 1807 |
| Bbv12I | GWGCWC | 1 cut(s) | 139 |
| BbvCI | CCTCAGC | 1 cut(s) | 104 |
| BbvI | GCAGC | 4 cut(s) | 1061, 1377, 1574, 1591 |
| BccI | CCATC | 3 cut(s) | 1022, 1766, 1815 |
| BceAI | ACGGC | 1 cut(s) | 251 |
| BciT130I | CCWGG | 2 cut(s) | 1632, 1746 |
| BclI | TGATCA | 2 cut(s) | 295, 1248 |
| BcoDI | GTCTC | 2 cut(s) | 274, 1399 |
| BfaI | CTAG | 6 cut(s) | 354, 591, 699, 983, 1046, 1888 |
| BfmI | CTRYAG | 1 cut(s) | 1750 |
| BfuAI | ACCTGC | 2 cut(s) | 119, 383 |
| BisI | GCNGC | 4 cut(s) | 1050, 1366, 1563, 1605 |
| BlsI | GCNGC | 4 cut(s) | 1051, 1367, 1564, 1606 |
| Bme1390I | CCNGG | 2 cut(s) | 1632, 1746 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1231 |
| BmgT120I | GGNCC | 2 cut(s) | 1803, 1804 |
| BmiI | GGNNCC | 2 cut(s) | 1743, 1805 |
| BmrFI | CCNGG | 2 cut(s) | 1632, 1746 |
| BmrI | ACTGGG | 1 cut(s) | 726 |
| BmsI | GCATC | 2 cut(s) | 253, 853 |
| BmuI | ACTGGG | 1 cut(s) | 726 |
| Bpu10I | CCTNAGC | 1 cut(s) | 104 |
| BpuEI | CTTGAG | 2 cut(s) | 8, 947 |
| BsaJI | CCNNGG | 4 cut(s) | 474, 1075, 1630, 1631 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 224, 254 |
| Bse1I | ACTGG | 1 cut(s) | 721 |
| Bse3DI | GCAATG | 3 cut(s) | 122, 324, 621 |
| BseBI | CCWGG | 2 cut(s) | 1632, 1746 |
| BseDI | CCNNGG | 4 cut(s) | 474, 1075, 1630, 1631 |
| BseGI | GGATG | 3 cut(s) | 1114, 1777, 1807 |
| BseMI | GCAATG | 3 cut(s) | 122, 324, 621 |
| BseMII | CTCAG | 3 cut(s) | 118, 166, 1752 |
| BseNI | ACTGG | 1 cut(s) | 721 |
| BseRI | GAGGAG | 3 cut(s) | 572, 593, 1508 |
| BseSI | GKGCMC | 2 cut(s) | 1638, 1807 |
| BseXI | GCAGC | 4 cut(s) | 1061, 1377, 1574, 1591 |
| BseYI | CCCAGC | 3 cut(s) | 329, 989, 1881 |
| BsgI | GTGCAG | 2 cut(s) | 1384, 1590 |
| BshFI | GGCC | 3 cut(s) | 1034, 1532, 1805 |
| BshNI | GGYRCC | 1 cut(s) | 1741 |
| BsiHKAI | GWGCWC | 1 cut(s) | 139 |
| BsiSI | CCGG | 1 cut(s) | 1031 |
| BsmAI | GTCTC | 2 cut(s) | 274, 1399 |
| BsmBI | CGTCTC | 1 cut(s) | 274 |
| BsmI | GAATGC | 3 cut(s) | 387, 616, 984 |
| BsnI | GGCC | 3 cut(s) | 1034, 1532, 1805 |
| Bsp120I | GGGCCC | 1 cut(s) | 1803 |
| Bsp1286I | GDGCHC | 3 cut(s) | 139, 1638, 1807 |
| Bsp1407I | TGTACA | 2 cut(s) | 972, 1164 |
| Bsp143I | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| Bsp19I | CCATGG | 1 cut(s) | 1075 |
| BspACI | CCGC | 2 cut(s) | 72, 385 |
| BspANI | GGCC | 3 cut(s) | 1034, 1532, 1805 |
| BspCNI | CTCAG | 3 cut(s) | 117, 165, 1753 |
| BspHI | TCATGA | 3 cut(s) | 949, 1245, 1861 |
| BspLI | GGNNCC | 2 cut(s) | 1743, 1805 |
| BspMI | ACCTGC | 2 cut(s) | 119, 383 |
| BspT107I | GGYRCC | 1 cut(s) | 1741 |
| BsrDI | GCAATG | 3 cut(s) | 122, 324, 621 |
| BsrGI | TGTACA | 2 cut(s) | 972, 1164 |
| BsrI | ACTGG | 1 cut(s) | 721 |
| BssECI | CCNNGG | 4 cut(s) | 474, 1075, 1630, 1631 |
| BssMI | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| BssT1I | CCWWGG | 2 cut(s) | 474, 1075 |
| Bst2UI | CCWGG | 2 cut(s) | 1632, 1746 |
| Bst4CI | ACNGT | 2 cut(s) | 712, 939 |
| Bst6I | CTCTTC | 2 cut(s) | 151, 1686 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 326, 1519, 1601 |
| BstAUI | TGTACA | 2 cut(s) | 972, 1164 |
| BstC8I | GCNNGC | 7 cut(s) | 129, 139, 164, 1036, 1265, 1363, 1782 |
| BstDEI | CTNAG | 3 cut(s) | 104, 152, 1761 |
| BstDSI | CCRYGG | 1 cut(s) | 1075 |
| BstEII | GGTNACC | 1 cut(s) | 1009 |
| BstF5I | GGATG | 3 cut(s) | 1114, 1777, 1807 |
| BstHHI | GCGC | 1 cut(s) | 565 |
| BstKTI | GATC | 5 cut(s) | 298, 831, 1006, 1155, 1251 |
| BstMAI | GTCTC | 2 cut(s) | 274, 1399 |
| BstMBI | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 147, 317, 326, 434, 1283, 1519, 1559, 1601 |
| BstNI | CCWGG | 2 cut(s) | 1632, 1746 |
| BstPI | GGTNACC | 1 cut(s) | 1009 |
| BstSCI | CCNGG | 2 cut(s) | 1630, 1744 |
| BstSFI | CTRYAG | 1 cut(s) | 1750 |
| BstSLI | GKGCMC | 2 cut(s) | 1638, 1807 |
| BstV1I | GCAGC | 4 cut(s) | 1061, 1377, 1574, 1591 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1540 |
| BsuRI | GGCC | 3 cut(s) | 1034, 1532, 1805 |
| BtgI | CCRYGG | 1 cut(s) | 1075 |
| BtsCI | GGATG | 3 cut(s) | 1114, 1777, 1807 |
| BtsI | GCAGTG | 3 cut(s) | 336, 774, 933 |
| BtsIMutI | CAGTG | 4 cut(s) | 336, 774, 933, 944 |
| BveI | ACCTGC | 2 cut(s) | 119, 383 |
| Cac8I | GCNNGC | 7 cut(s) | 129, 139, 164, 1036, 1265, 1363, 1782 |
| CaiI | CAGNNNCTG | 1 cut(s) | 111 |
| CciI | TCATGA | 3 cut(s) | 949, 1245, 1861 |
| CfoI | GCGC | 1 cut(s) | 565 |
| Cfr13I | GGNCC | 2 cut(s) | 1803, 1804 |
| CseI | GACGC | 1 cut(s) | 1221 |
| Csp6I | GTAC | 4 cut(s) | 238, 973, 1165, 1877 |
| CviQI | GTAC | 4 cut(s) | 238, 973, 1165, 1877 |
| DdeI | CTNAG | 3 cut(s) | 104, 152, 1761 |
| DpnI | GATC | 5 cut(s) | 297, 830, 1005, 1154, 1250 |
| DpnII | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| DraIII | CACNNNGTG | 2 cut(s) | 94, 304 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1231 |
| Eam1104I | CTCTTC | 2 cut(s) | 151, 1686 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1231 |
| EarI | CTCTTC | 2 cut(s) | 151, 1686 |
| Eco130I | CCWWGG | 2 cut(s) | 474, 1075 |
| Eco24I | GRGCYC | 1 cut(s) | 1807 |
| Eco91I | GGTNACC | 1 cut(s) | 1009 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1803 |
| EcoO65I | GGTNACC | 1 cut(s) | 1009 |
| EcoRI | GAATTC | 1 cut(s) | 368 |
| EcoRII | CCWGG | 2 cut(s) | 1630, 1744 |
| EcoT14I | CCWWGG | 2 cut(s) | 474, 1075 |
| EcoT22I | ATGCAT | 2 cut(s) | 826, 868 |
| EcoT38I | GRGCYC | 1 cut(s) | 1807 |
| ErhI | CCWWGG | 2 cut(s) | 474, 1075 |
| Esp3I | CGTCTC | 1 cut(s) | 274 |
| FbaI | TGATCA | 2 cut(s) | 295, 1248 |
| FblI | GTMKAC | 1 cut(s) | 1570 |
| Fnu4HI | GCNGC | 4 cut(s) | 1050, 1366, 1563, 1605 |
| FokI | GGATG | 3 cut(s) | 1121, 1784, 1794 |
| FriOI | GRGCYC | 1 cut(s) | 1807 |
| Fsp4HI | GCNGC | 4 cut(s) | 1050, 1366, 1563, 1605 |
| FspBI | CTAG | 6 cut(s) | 354, 591, 699, 983, 1046, 1888 |
| GlaI | GCGC | 1 cut(s) | 564 |
| GluI | GCNGC | 4 cut(s) | 1050, 1366, 1563, 1605 |
| GsaI | CCCAGC | 3 cut(s) | 333, 993, 1885 |
| HaeIII | GGCC | 3 cut(s) | 1034, 1532, 1805 |
| HapII | CCGG | 1 cut(s) | 1031 |
| HgaI | GACGC | 1 cut(s) | 1221 |
| HhaI | GCGC | 1 cut(s) | 565 |
| Hin6I | GCGC | 1 cut(s) | 563 |
| HinP1I | GCGC | 1 cut(s) | 563 |
| HincII | GTYRAC | 3 cut(s) | 1465, 1571, 1656 |
| HindII | GTYRAC | 3 cut(s) | 1465, 1571, 1656 |
| HindIII | AAGCTT | 1 cut(s) | 965 |
| HinfI | GANTC | 4 cut(s) | 195, 800, 1572, 1841 |
| HpaI | GTTAAC | 1 cut(s) | 1656 |
| HpaII | CCGG | 1 cut(s) | 1031 |
| HphI | GGTGA | 5 cut(s) | 272, 538, 692, 1021, 1808 |
| Hpy166II | GTNNAC | 8 cut(s) | 88, 336, 414, 855, 1167, 1465, 1571, 1656 |
| Hpy188I | TCNGA | 4 cut(s) | 155, 434, 1588, 1702 |
| Hpy188III | TCNNGA | 8 cut(s) | 25, 187, 591, 950, 1018, 1246, 1735, 1862 |
| Hpy8I | GTNNAC | 8 cut(s) | 88, 336, 414, 855, 1167, 1465, 1571, 1656 |
| HpyAV | CCTTC | 9 cut(s) | 42, 46, 457, 597, 680, 1099, 1382, 1732, 1762 |
| HpyCH4III | ACNGT | 2 cut(s) | 712, 939 |
| HpyCH4IV | ACGT | 4 cut(s) | 416, 643, 1227, 1658 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 147, 317, 326, 434, 1283, 1519, 1559, 1601 |
| HpyF3I | CTNAG | 3 cut(s) | 104, 152, 1761 |
| HpySE526I | ACGT | 4 cut(s) | 416, 643, 1227, 1658 |
| HspAI | GCGC | 1 cut(s) | 563 |
| Ksp22I | TGATCA | 2 cut(s) | 295, 1248 |
| KspAI | GTTAAC | 1 cut(s) | 1656 |
| Kzo9I | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| LmnI | GCTCC | 2 cut(s) | 209, 1179 |
| Lsp1109I | GCAGC | 4 cut(s) | 1061, 1377, 1574, 1591 |
| LweI | GCATC | 2 cut(s) | 253, 853 |
| MaeI | CTAG | 6 cut(s) | 354, 591, 699, 983, 1046, 1888 |
| MaeII | ACGT | 4 cut(s) | 416, 643, 1227, 1658 |
| MaeIII | GTNAC | 3 cut(s) | 712, 1009, 1336 |
| MalI | GATC | 5 cut(s) | 297, 830, 1005, 1154, 1250 |
| MboI | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| MboII | GAAGA | 5 cut(s) | 168, 724, 872, 1133, 1703 |
| MhlI | GDGCHC | 3 cut(s) | 139, 1638, 1807 |
| MlyI | GAGTC | 2 cut(s) | 1566, 1835 |
| MmeI | TCCRAC | 2 cut(s) | 474, 1460 |
| Mph1103I | ATGCAT | 2 cut(s) | 826, 868 |
| MroXI | GAANNNNTTC | 1 cut(s) | 194 |
| MseI | TTAA | 5 cut(s) | 483, 621, 1089, 1128, 1655 |
| MslI | CAYNNNNRTG | 6 cut(s) | 233, 1160, 1250, 1272, 1866, 1872 |
| MspI | CCGG | 1 cut(s) | 1031 |
| MspR9I | CCNGG | 2 cut(s) | 1632, 1746 |
| Mva1269I | GAATGC | 3 cut(s) | 387, 616, 984 |
| MvaI | CCWGG | 2 cut(s) | 1632, 1746 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 147, 317, 326, 434, 1283, 1519, 1559, 1601 |
| NcoI | CCATGG | 1 cut(s) | 1075 |
| NdeII | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| NlaIV | GGNNCC | 2 cut(s) | 1743, 1805 |
| NmuCI | GTSAC | 2 cut(s) | 1009, 1336 |
| NsiI | ATGCAT | 2 cut(s) | 826, 868 |
| PaeI | GCATGC | 2 cut(s) | 1267, 1784 |
| PagI | TCATGA | 3 cut(s) | 949, 1245, 1861 |
| PaqCI | CACCTGC | 2 cut(s) | 119, 383 |
| PasI | CCCWGGG | 1 cut(s) | 1631 |
| PciI | ACATGT | 4 cut(s) | 234, 834, 1161, 1486 |
| PctI | GAATGC | 3 cut(s) | 387, 616, 984 |
| PdmI | GAANNNNTTC | 1 cut(s) | 194 |
| PfeI | GAWTC | 2 cut(s) | 195, 800 |
| PkrI | GCNGC | 4 cut(s) | 1051, 1367, 1564, 1606 |
| PleI | GAGTC | 2 cut(s) | 1566, 1835 |
| PpsI | GAGTC | 2 cut(s) | 1566, 1835 |
| PscI | ACATGT | 4 cut(s) | 234, 834, 1161, 1486 |
| Psp6I | CCWGG | 2 cut(s) | 1630, 1744 |
| PspEI | GGTNACC | 1 cut(s) | 1009 |
| PspFI | CCCAGC | 3 cut(s) | 329, 989, 1881 |
| PspGI | CCWGG | 2 cut(s) | 1630, 1744 |
| PspN4I | GGNNCC | 2 cut(s) | 1743, 1805 |
| PspOMI | GGGCCC | 1 cut(s) | 1803 |
| PspPI | GGNCC | 2 cut(s) | 1803, 1804 |
| PstNI | CAGNNNCTG | 1 cut(s) | 111 |
| RsaI | GTAC | 4 cut(s) | 239, 974, 1166, 1878 |
| RsaNI | GTAC | 4 cut(s) | 238, 973, 1165, 1877 |
| RseI | CAYNNNNRTG | 6 cut(s) | 233, 1160, 1250, 1272, 1866, 1872 |
| SalI | GTCGAC | 1 cut(s) | 1569 |
| SaqAI | TTAA | 5 cut(s) | 483, 621, 1089, 1128, 1655 |
| SatI | GCNGC | 4 cut(s) | 1050, 1366, 1563, 1605 |
| Sau3AI | GATC | 5 cut(s) | 295, 828, 1003, 1152, 1248 |
| Sau96I | GGNCC | 2 cut(s) | 1803, 1804 |
| SchI | GAGTC | 2 cut(s) | 1566, 1835 |
| ScrFI | CCNGG | 2 cut(s) | 1632, 1746 |
| SduI | GDGCHC | 3 cut(s) | 139, 1638, 1807 |
| SfaNI | GCATC | 2 cut(s) | 253, 853 |
| SfcI | CTRYAG | 1 cut(s) | 1750 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 233, 1160, 1250, 1272, 1866, 1872 |
| SmlI | CTYRAG | 2 cut(s) | 23, 962 |
| SmoI | CTYRAG | 2 cut(s) | 23, 962 |
| SphI | GCATGC | 2 cut(s) | 1267, 1784 |
| SsiI | CCGC | 2 cut(s) | 72, 385 |
| SspI | AATATT | 1 cut(s) | 1666 |
| SspMI | CTAG | 6 cut(s) | 354, 591, 699, 983, 1046, 1888 |
| StyD4I | CCNGG | 2 cut(s) | 1630, 1744 |
| StyI | CCWWGG | 2 cut(s) | 474, 1075 |
| TaaI | ACNGT | 2 cut(s) | 712, 939 |
| TaiI | ACGT | 4 cut(s) | 419, 646, 1230, 1661 |
| TaqI | TCGA | 4 cut(s) | 831, 1477, 1570, 1855 |
| TatI | WGTACW | 3 cut(s) | 237, 972, 1164 |
| TfiI | GAWTC | 2 cut(s) | 195, 800 |
| Tru1I | TTAA | 5 cut(s) | 483, 621, 1089, 1128, 1655 |
| Tru9I | TTAA | 5 cut(s) | 483, 621, 1089, 1128, 1655 |
| TscAI | CASTG | 4 cut(s) | 343, 774, 933, 944 |
| TseFI | GTSAC | 2 cut(s) | 1009, 1336 |
| TseI | GCWGC | 4 cut(s) | 1049, 1365, 1562, 1604 |
| Tsp45I | GTSAC | 2 cut(s) | 1009, 1336 |
| TspDTI | ATGAA | 8 cut(s) | 17, 458, 948, 969, 1229, 1427, 1704, 1850 |
| TspGWI | ACGGA | 1 cut(s) | 1284 |
| TspRI | CASTG | 4 cut(s) | 343, 774, 933, 944 |
| XapI | RAATTY | 3 cut(s) | 368, 542, 1582 |
| XbaI | TCTAGA | 1 cut(s) | 590 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1153, 1752 |
| XmiI | GTMKAC | 1 cut(s) | 1570 |
| XmnI | GAANNNNTTC | 1 cut(s) | 194 |
| XspI | CTAG | 6 cut(s) | 354, 591, 699, 983, 1046, 1888 |
| Zsp2I | ATGCAT | 2 cut(s) | 826, 868 |