Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14730 |
| malus_domestica | MD05G1289700.v1.1 |
| prunus_persica | Prupe.4G076000_v2.0.a1 |
| pyrus_communis | pycom05g26680 |
| rosa_chinensis | RchiOBHm_Chr7g0219901 |
| rosa_laevigata | RLG00000009523 RLG00000031996 |
| rosa_multiflora | Rmu_sc0004521.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00063400 |
| rosa_rugosa | Rorug05G0007900 |
| rosa_samantha | Rh4BG067800 Rh4CG075700 Rh5AG101900 Rh5AG102300 Rh5BG098600 Rh5CG110800 Rh5DG097900 |
| rosa_wichuraiana | Rw5G008930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 107 |
| AdeI | CACNNNGTG | 1 cut(s) | 42 |
| AfaI | GTAC | 1 cut(s) | 189 |
| AflIII | ACRYGT | 1 cut(s) | 267 |
| AgsI | TTSAA | 3 cut(s) | 18, 107, 252 |
| AluBI | AGCT | 1 cut(s) | 176 |
| AluI | AGCT | 1 cut(s) | 176 |
| ApoI | RAATTY | 1 cut(s) | 107 |
| AseI | ATTAAT | 1 cut(s) | 302 |
| AspLEI | GCGC | 1 cut(s) | 126 |
| BclI | TGATCA | 1 cut(s) | 33 |
| BfaI | CTAG | 1 cut(s) | 93 |
| BmsI | GCATC | 1 cut(s) | 286 |
| BpmI | CTGGAG | 1 cut(s) | 212 |
| Bse1I | ACTGG | 1 cut(s) | 195 |
| Bse3DI | GCAATG | 1 cut(s) | 62 |
| BseMI | GCAATG | 1 cut(s) | 62 |
| BseNI | ACTGG | 1 cut(s) | 195 |
| BsmI | GAATGC | 1 cut(s) | 126 |
| Bsp143I | GATC | 2 cut(s) | 33, 261 |
| BsrDI | GCAATG | 1 cut(s) | 62 |
| BsrI | ACTGG | 1 cut(s) | 195 |
| BssMI | GATC | 2 cut(s) | 33, 261 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 64, 296 |
| BstHHI | GCGC | 1 cut(s) | 126 |
| BstKTI | GATC | 2 cut(s) | 36, 264 |
| BstMBI | GATC | 2 cut(s) | 33, 261 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 55, 64, 296 |
| BstNSI | RCATGY | 1 cut(s) | 271 |
| BtsI | GCAGTG | 1 cut(s) | 74 |
| BtsIMutI | CAGTG | 1 cut(s) | 74 |
| CfoI | GCGC | 1 cut(s) | 126 |
| Csp6I | GTAC | 1 cut(s) | 188 |
| CviAII | CATG | 3 cut(s) | 31, 162, 268 |
| CviJI | RGCY | 2 cut(s) | 92, 176 |
| CviKI_1 | RGCY | 2 cut(s) | 92, 176 |
| CviQI | GTAC | 1 cut(s) | 188 |
| DpnI | GATC | 2 cut(s) | 35, 263 |
| DpnII | GATC | 2 cut(s) | 33, 261 |
| DraIII | CACNNNGTG | 1 cut(s) | 42 |
| EcoRI | GAATTC | 1 cut(s) | 107 |
| EcoT22I | ATGCAT | 2 cut(s) | 259, 301 |
| FaeI | CATG | 3 cut(s) | 34, 165, 271 |
| FaiI | YATR | 7 cut(s) | 23, 32, 114, 163, 231, 269, 273 |
| FatI | CATG | 3 cut(s) | 30, 161, 267 |
| FbaI | TGATCA | 1 cut(s) | 33 |
| FspBI | CTAG | 1 cut(s) | 93 |
| GlaI | GCGC | 1 cut(s) | 125 |
| GsuI | CTGGAG | 1 cut(s) | 212 |
| HhaI | GCGC | 1 cut(s) | 126 |
| Hin1II | CATG | 3 cut(s) | 34, 165, 271 |
| Hin6I | GCGC | 1 cut(s) | 124 |
| HinP1I | GCGC | 1 cut(s) | 124 |
| HinfI | GANTC | 2 cut(s) | 212, 233 |
| Hpy166II | GTNNAC | 1 cut(s) | 153 |
| Hpy188I | TCNGA | 1 cut(s) | 173 |
| Hpy8I | GTNNAC | 1 cut(s) | 153 |
| HpyAV | CCTTC | 2 cut(s) | 24, 226 |
| HpyCH4IV | ACGT | 1 cut(s) | 155 |
| HpyCH4V | TGCA | 6 cut(s) | 58, 79, 257, 282, 290, 299 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 55, 64, 296 |
| HpySE526I | ACGT | 1 cut(s) | 155 |
| Hsp92II | CATG | 3 cut(s) | 34, 165, 271 |
| HspAI | GCGC | 1 cut(s) | 124 |
| Ksp22I | TGATCA | 1 cut(s) | 33 |
| Kzo9I | GATC | 2 cut(s) | 33, 261 |
| LpnPI | CCDG | 3 cut(s) | 117, 156, 176 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeI | CTAG | 1 cut(s) | 93 |
| MaeII | ACGT | 1 cut(s) | 155 |
| MaeIII | GTNAC | 1 cut(s) | 72 |
| MalI | GATC | 2 cut(s) | 35, 263 |
| MboI | GATC | 2 cut(s) | 33, 261 |
| MboII | GAAGA | 1 cut(s) | 305 |
| MluCI | AATT | 2 cut(s) | 107, 303 |
| MnlI | CCTC | 3 cut(s) | 18, 187, 238 |
| Mph1103I | ATGCAT | 2 cut(s) | 259, 301 |
| MseI | TTAA | 1 cut(s) | 302 |
| Mva1269I | GAATGC | 1 cut(s) | 126 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 55, 64, 296 |
| NdeII | GATC | 2 cut(s) | 33, 261 |
| NlaIII | CATG | 3 cut(s) | 34, 165, 271 |
| NmuCI | GTSAC | 1 cut(s) | 72 |
| NsiI | ATGCAT | 2 cut(s) | 259, 301 |
| NspI | RCATGY | 1 cut(s) | 271 |
| PciI | ACATGT | 1 cut(s) | 267 |
| PctI | GAATGC | 1 cut(s) | 126 |
| PfeI | GAWTC | 2 cut(s) | 212, 233 |
| PscI | ACATGT | 1 cut(s) | 267 |
| PshBI | ATTAAT | 1 cut(s) | 302 |
| RsaI | GTAC | 1 cut(s) | 189 |
| RsaNI | GTAC | 1 cut(s) | 188 |
| SaqAI | TTAA | 1 cut(s) | 302 |
| Sau3AI | GATC | 2 cut(s) | 33, 261 |
| SetI | ASST | 6 cut(s) | 16, 136, 158, 178, 198, 249 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| Sse9I | AATT | 2 cut(s) | 107, 303 |
| SspMI | CTAG | 1 cut(s) | 93 |
| TaiI | ACGT | 1 cut(s) | 158 |
| TaqI | TCGA | 1 cut(s) | 264 |
| TasI | AATT | 2 cut(s) | 107, 303 |
| TfiI | GAWTC | 2 cut(s) | 212, 233 |
| Tru1I | TTAA | 1 cut(s) | 302 |
| Tru9I | TTAA | 1 cut(s) | 302 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TseFI | GTSAC | 1 cut(s) | 72 |
| Tsp45I | GTSAC | 1 cut(s) | 72 |
| TspRI | CASTG | 1 cut(s) | 81 |
| VspI | ATTAAT | 1 cut(s) | 302 |
| XapI | RAATTY | 1 cut(s) | 107 |
| XceI | RCATGY | 1 cut(s) | 271 |
| XspI | CTAG | 1 cut(s) | 93 |
| Zsp2I | ATGCAT | 2 cut(s) | 259, 301 |