Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018635

Physical Location & Seq

Genomic Coordinates Reverse (-)

54764470 .. 54764939

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20719

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAAGCTTCCTCAAGGGGCAGATAAAGGGGCACCAGAGGCACCCATCCCTATGAAGCTTCCTAGGGCAATGCGATCAGCTGCATCAAATGGTGGCAACTTATTTAGAGAAAGGAATTCTGATAAAGCAGATCAATCTGGTGTCAATAAGGAGGCCGGTGTTCCTGCTCCAAGAAGTCCTCTGCGGCAGAACAAAACATCAGATGAGAAGGAGAACTGTGGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

75

Amino Acids

7.99

Weight (kDa)

9.65

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018635)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0231201 RchiOBHm_Chr7g0231211 RchiOBHm_Chr7g0236521
rosa_laevigata	RLG00000001117
rosa_multiflora	Rmu_sc0002449.1_g000009
rosa_samantha	Rh7AG448100 Rh7AG448600 Rh7AG452100 Rh7CG431800
rosa_wichuraiana	Rw7G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	31, 40
AciI	CCGC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	115
AluBI	AGCT	3 cut(s)	7, 58, 80
AluI	AGCT	3 cut(s)	7, 58, 80
AoxI	GGCC	2 cut(s)	153, 220
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	115
AspA2I	CCTAGG	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	34
BanI	GGYRCC	2 cut(s)	31, 40
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	81, 185
BlnI	CCTAGG	1 cut(s)	62
BlsI	GCNGC	2 cut(s)	82, 186
BmiI	GGNNCC	2 cut(s)	33, 42
BmsI	GCATC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	155, 222
BshNI	GGYRCC	2 cut(s)	31, 40
BsiSI	CCGG	1 cut(s)	156
BsnI	GGCC	2 cut(s)	155, 222
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	74, 130
BspACI	CCGC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	155, 222
BspLI	GGNNCC	2 cut(s)	33, 42
BspT107I	GGYRCC	2 cut(s)	31, 40
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	74, 130
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	77, 133
BstMBI	GATC	2 cut(s)	74, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	155, 222
BtsCI	GGATG	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	155
CviJI	RGCY	5 cut(s)	7, 58, 80, 155, 222
CviKI_1	RGCY	5 cut(s)	7, 58, 80, 155, 222
DpnI	GATC	2 cut(s)	76, 132
DpnII	GATC	2 cut(s)	74, 130
Eco130I	CCWWGG	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaiI	YATR	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	81, 185
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	81, 185
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	81, 185
HaeIII	GGCC	2 cut(s)	155, 222
HapII	CCGG	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	5, 56
HpaII	CCGG	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	121, 202
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	74, 130
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	48, 123, 169, 177
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	63
MalI	GATC	2 cut(s)	76, 132
MboI	GATC	2 cut(s)	74, 130
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	4 cut(s)	21, 31, 145, 189
MseI	TTAA	1 cut(s)	226
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	74, 130
NlaIV	GGNNCC	2 cut(s)	33, 42
PkrI	GCNGC	2 cut(s)	82, 186
PspN4I	GGNNCC	2 cut(s)	33, 42
PvuII	CAGCTG	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	226
SatI	GCNGC	2 cut(s)	81, 185
Sau3AI	GATC	2 cut(s)	74, 130
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	3 cut(s)	9, 60, 82
SfaNI	GCATC	1 cut(s)	92
SgeI	CNNG	7 cut(s)	26, 47, 75, 150, 168, 176, 183
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	184
SspMI	CTAG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	17, 68
XapI	RAATTY	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.