Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0018635

Physical Location & Seq

Genomic Coordinates Reverse (-)

61840261 .. 61842139

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG452100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTTTTGCAACGAAAGACAGAAGATGCTAATACGGCCACAAAAAAGCTAAAGGAGCTTTTAGAATCCAGAAAGACTTCTTCACGTGAAACTTCTGGTCATAATGCTCATGGTATTCAGGCTCTGATGCAGGCAATCGAACTTGAGCTTGAAGTCACAGTTAAGACACATGAACTAAGATCTGAGTATGAGGGGCAAATTGAGGAGCGTGCTATGATGGCCAAGGAAAGAACCAAGCTAATAGAAGAACAACGTAATTTAAGTGATTCCTCGGAAATAATGTCTCCTGGTGCAAGAAATTCAAGGATTTTTGCACTTGAAAACATGCTTGCTACTTCTTCTAGCACCATGGTATCTATGGCATCACAATTGTCAGAAGCAGAAGAGCGCGACCGGGGTTTCAATGGCAGGGGGCGTTGGAATCAAGTTCGGTCTCTTACGGATGCCAAAATTTTGATGAATCATCTGTTCAACTTAGCTTCTTCCTCCAGGCCAGAAAAAGGGGCACCAGAGGCACCCATCCCTATGAAGCTTCTTAGGGCAATGCGATCAGCTGCATCAAATGGTGGCAACTTATTTAGAGAAAGGAATTCTGATAAAGCAGATCAATCTGGTGTCAATAAGGAGGCCGGTGTTCCTGCTCCAAGAAGTCCTCTGCGGCAGAACAAAACATCAGATGAGAAGGAGAACTGTGGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

233

Amino Acids

25.93

Weight (kDa)

9.01

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018635)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0231201 RchiOBHm_Chr7g0231211 RchiOBHm_Chr7g0236521
rosa_laevigata	RLG00000001117
rosa_multiflora	Rmu_sc0002449.1_g000009
rosa_samantha	Rh7AG448100 Rh7AG448600 Rh7AG452100 Rh7CG431800
rosa_wichuraiana	Rw7G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	505, 514
AccII	CGCG	1 cut(s)	390
AciI	CCGC	1 cut(s)	658
AcoI	YGGCCR	2 cut(s)	36, 219
AcsI	RAATTY	3 cut(s)	298, 450, 589
AcvI	CACGTG	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	5 cut(s)	152, 303, 320, 403, 472
AjnI	CCWGG	2 cut(s)	286, 488
AluBI	AGCT	7 cut(s)	49, 58, 148, 238, 479, 532, 554
AluI	AGCT	7 cut(s)	49, 58, 148, 238, 479, 532, 554
Alw26I	GTCTC	2 cut(s)	288, 438
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	5 cut(s)	36, 219, 491, 627, 694
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	3 cut(s)	298, 450, 589
Asp700I	GAANNNNTTC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BalI	TGGCCA	1 cut(s)	221
BanI	GGYRCC	2 cut(s)	505, 514
BbrPI	CACGTG	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	2 cut(s)	211, 527
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	288, 490
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	288, 438
BfaI	CTAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	2 cut(s)	555, 659
BlsI	GCNGC	2 cut(s)	556, 660
Bme1390I	CCNGG	3 cut(s)	288, 395, 490
BmiI	GGNNCC	2 cut(s)	507, 516
BmrFI	CCNGG	3 cut(s)	288, 395, 490
BmsI	GCATC	5 cut(s)	16, 117, 371, 433, 566
BpmI	CTGGAG	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	222, 270, 348, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	288, 490
BseDI	CCNNGG	4 cut(s)	222, 270, 348, 394
BseGI	GGATG	2 cut(s)	448, 519
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	541
Bsh1236I	CGCG	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	5 cut(s)	38, 221, 493, 629, 696
BshNI	GGYRCC	2 cut(s)	505, 514
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	394, 630
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	288, 438
BsnI	GGCC	5 cut(s)	38, 221, 493, 629, 696
Bso31I	GGTCTC	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	3 cut(s)	179, 548, 604
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	1 cut(s)	658
BspANI	GGCC	5 cut(s)	38, 221, 493, 629, 696
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	507, 516
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	2 cut(s)	505, 514
BspTNI	GGTCTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	629
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	222, 270, 348, 394
BssMI	GATC	3 cut(s)	179, 548, 604
BssT1I	CCWWGG	2 cut(s)	222, 348
Bst2UI	CCWGG	2 cut(s)	288, 490
Bst4CI	ACNGT	2 cut(s)	160, 692
Bst6I	CTCTTC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	3 cut(s)	132, 210, 330
BstDEI	CTNAG	4 cut(s)	176, 183, 475, 536
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	448, 519
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	182, 551, 607
BstMAI	GTCTC	2 cut(s)	288, 438
BstMBI	GATC	3 cut(s)	179, 548, 604
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 55, 218, 512
BstNI	CCWGG	2 cut(s)	288, 490
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	286, 393, 488
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	5 cut(s)	38, 221, 493, 629, 696
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	448, 519
Cac8I	GCNNGC	3 cut(s)	132, 210, 330
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	629
CviAII	CATG	4 cut(s)	110, 170, 325, 349
DdeI	CTNAG	4 cut(s)	176, 183, 475, 536
DpnI	GATC	3 cut(s)	181, 550, 606
DpnII	GATC	3 cut(s)	179, 548, 604
EaeI	YGGCCR	2 cut(s)	36, 219
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	2 cut(s)	222, 348
Eco31I	GGTCTC	1 cut(s)	438
Eco72I	CACGTG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	286, 488
EcoT14I	CCWWGG	2 cut(s)	222, 348
ErhI	CCWWGG	2 cut(s)	222, 348
FaeI	CATG	4 cut(s)	113, 173, 328, 352
FaiI	YATR	9 cut(s)	102, 111, 171, 189, 215, 326, 350, 359, 527
FatI	CATG	4 cut(s)	109, 169, 324, 348
Fnu4HI	GCNGC	2 cut(s)	555, 659
FokI	GGATG	2 cut(s)	455, 506
Fsp4HI	GCNGC	2 cut(s)	555, 659
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	2 cut(s)	555, 659
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	5 cut(s)	38, 221, 493, 629, 696
HapII	CCGG	2 cut(s)	394, 630
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	113, 173, 328, 352
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	4 cut(s)	65, 266, 421, 460
HpaII	CCGG	2 cut(s)	394, 630
Hpy188I	TCNGA	6 cut(s)	126, 184, 274, 376, 595, 676
Hpy188III	TCNNGA	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	676
HpyCH4III	ACNGT	2 cut(s)	160, 692
HpyCH4IV	ACGT	2 cut(s)	85, 253
HpyCH4V	TGCA	5 cut(s)	10, 130, 293, 314, 557
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 55, 218, 512
HpyF3I	CTNAG	4 cut(s)	176, 183, 475, 536
HpySE526I	ACGT	2 cut(s)	85, 253
Hsp92II	CATG	4 cut(s)	113, 173, 328, 352
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	179, 548, 604
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	3 cut(s)	55, 205, 646
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	5 cut(s)	16, 117, 371, 433, 566
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	85, 253
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	3 cut(s)	181, 550, 606
MboI	GATC	3 cut(s)	179, 548, 604
MboII	GAAGA	6 cut(s)	35, 72, 257, 330, 395, 474
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	508
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	6 cut(s)	198, 256, 298, 368, 450, 589
MluNI	TGGCCA	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	7 cut(s)	184, 196, 280, 496, 505, 619, 663
Mox20I	TGGCCA	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	3 cut(s)	162, 260, 700
MslI	CAYNNNNRTG	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	2 cut(s)	394, 630
MspR9I	CCNGG	3 cut(s)	288, 395, 490
MunI	CAATTG	1 cut(s)	368
MvaI	CCWGG	2 cut(s)	288, 490
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	35, 55, 218, 512
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	179, 548, 604
NlaIII	CATG	4 cut(s)	113, 173, 328, 352
NlaIV	GGNNCC	2 cut(s)	507, 516
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	4 cut(s)	65, 266, 421, 460
PkrI	GCNGC	2 cut(s)	556, 660
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	286, 488
PspCI	CACGTG	1 cut(s)	86
PspGI	CCWGG	2 cut(s)	286, 488
PspN4I	GGNNCC	2 cut(s)	507, 516
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	3 cut(s)	162, 260, 700
SatI	GCNGC	2 cut(s)	555, 659
Sau3AI	GATC	3 cut(s)	179, 548, 604
ScrFI	CCNGG	3 cut(s)	288, 395, 490
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	9 cut(s)	51, 60, 88, 150, 240, 256, 481, 534, 556
SfaNI	GCATC	5 cut(s)	16, 117, 371, 433, 566
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	6 cut(s)	198, 256, 298, 368, 450, 589
SsiI	CCGC	1 cut(s)	658
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	3 cut(s)	286, 393, 488
StyI	CCWWGG	2 cut(s)	222, 348
TaaI	ACNGT	2 cut(s)	160, 692
TaiI	ACGT	2 cut(s)	88, 256
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	6 cut(s)	198, 256, 298, 368, 450, 589
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	4 cut(s)	65, 266, 421, 460
Tru1I	TTAA	3 cut(s)	162, 260, 700
Tru9I	TTAA	3 cut(s)	162, 260, 700
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	186, 473, 542
TspGWI	ACGGA	1 cut(s)	455
XapI	RAATTY	3 cut(s)	298, 450, 589
XceI	RCATGY	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.