Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0018635

Physical Location & Seq

Genomic Coordinates Forward (+)

56735703 .. 56736864

Gene Structure 1162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGGCAATCGAACTTGAGCTTGAAGTCACAGTTAAGACTCATGAAGTAAGATCTGAGTATGAGCTGCAAATTGAAGAGCGTGCTATGATGGCCAAGGAAAGAACCAAGCTAATAGAAGAACAACGTAATTTAAGTGATTCCTCAGAAATAATGTCTCCTGGTGCAAGAAATTCAAGGATTTTTGCACTTGAAAACATGCTTGCTACTTCTTCTAGCACCATGGTATCTATGGCATCACAATTGTCAGAAGCAGAAGAGCGCGAGCGGGGTTTCAATGGCGGGGGGGCGTTGGAATCAAGTTCGGTCTCTTACAGATGCCAAAATTTTGATGAATCATGTGTTCAACTTAGCTTCTTCCTCCAGGTGCCTGTTACGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

4.72

Isoelectric Point (pI)

67.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018635)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0231201 RchiOBHm_Chr7g0231211 RchiOBHm_Chr7g0236521
rosa_laevigata	RLG00000001117
rosa_multiflora	Rmu_sc0002449.1_g000009
rosa_samantha	Rh7AG448100 Rh7AG448600 Rh7AG452100 Rh7CG431800
rosa_wichuraiana	Rw7G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	268
AccII	CGCG	1 cut(s)	264
AciI	CCGC	2 cut(s)	268, 282
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	172, 325
AgsI	TTSAA	6 cut(s)	26, 77, 177, 194, 277, 347
AjnI	CCWGG	2 cut(s)	160, 363
AluBI	AGCT	4 cut(s)	22, 67, 112, 354
AluI	AGCT	4 cut(s)	22, 67, 112, 354
Alw26I	GTCTC	2 cut(s)	162, 313
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	172, 325
AspLEI	GCGC	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BalI	TGGCCA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	162, 365
BcoDI	GTCTC	2 cut(s)	162, 313
BfaI	CTAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	162, 365
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	162, 365
BmsI	GCATC	2 cut(s)	245, 308
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	96, 222
BseBI	CCWGG	2 cut(s)	162, 365
BseDI	CCNNGG	2 cut(s)	96, 222
BseMII	CTCAG	2 cut(s)	48, 159
BseXI	GCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	162, 313
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	2 cut(s)	268, 282
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	49, 158
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	369
BspQI	GCTCTTC	2 cut(s)	72, 252
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	96, 222
BssMI	GATC	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	96, 222
Bst2UI	CCWGG	2 cut(s)	162, 365
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	72, 252
BstC8I	GCNNGC	4 cut(s)	6, 84, 204, 266
BstDEI	CTNAG	3 cut(s)	57, 145, 350
BstDSI	CCRYGG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	2 cut(s)	162, 313
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	162, 365
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	160, 363
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	222
Cac8I	GCNNGC	4 cut(s)	6, 84, 204, 266
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	264
CviAII	CATG	4 cut(s)	44, 199, 223, 339
CviJI	RGCY	5 cut(s)	22, 67, 95, 112, 354
CviKI_1	RGCY	5 cut(s)	22, 67, 95, 112, 354
DdeI	CTNAG	3 cut(s)	57, 145, 350
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	72, 252
EarI	CTCTTC	2 cut(s)	72, 252
Eco130I	CCWWGG	2 cut(s)	96, 222
Eco31I	GGTCTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	160, 363
EcoT14I	CCWWGG	2 cut(s)	96, 222
ErhI	CCWWGG	2 cut(s)	96, 222
FaeI	CATG	4 cut(s)	47, 202, 226, 342
FaiI	YATR	7 cut(s)	45, 63, 89, 200, 224, 233, 340
FatI	CATG	4 cut(s)	43, 198, 222, 338
FauI	CCCGC	2 cut(s)	261, 275
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	4 cut(s)	47, 202, 226, 342
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	4 cut(s)	40, 140, 296, 335
Hpy188I	TCNGA	3 cut(s)	58, 148, 250
Hpy188III	TCNNGA	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	4, 70, 167, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	57, 145, 350
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	47, 202, 226, 342
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	53
LguI	GCTCTTC	2 cut(s)	72, 252
LpnPI	CCDG	4 cut(s)	147, 174, 350, 377
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	245, 308
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	2 cut(s)	28, 373
MalI	GATC	1 cut(s)	55
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	1 cut(s)	53
MboII	GAAGA	5 cut(s)	89, 131, 204, 269, 349
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	5 cut(s)	72, 130, 172, 242, 325
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	2 cut(s)	154, 371
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	2 cut(s)	36, 134
Msp20I	TGGCCA	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	162, 365
MunI	CAATTG	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	162, 365
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	47, 202, 226, 342
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	43
PciSI	GCTCTTC	2 cut(s)	72, 252
PfeI	GAWTC	3 cut(s)	140, 296, 335
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	160, 363
PspGI	CCWGG	2 cut(s)	160, 363
PspN4I	GGNNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	53
SapI	GCTCTTC	2 cut(s)	72, 252
SaqAI	TTAA	2 cut(s)	36, 134
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	162, 365
SetI	ASST	6 cut(s)	24, 69, 114, 130, 356, 369
SfaNI	GCATC	2 cut(s)	245, 308
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	5 cut(s)	72, 130, 172, 242, 325
SsiI	CCGC	2 cut(s)	268, 282
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	160, 363
StyI	CCWWGG	2 cut(s)	96, 222
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	12
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	5 cut(s)	72, 130, 172, 242, 325
TfiI	GAWTC	3 cut(s)	140, 296, 335
Tru1I	TTAA	2 cut(s)	36, 134
Tru9I	TTAA	2 cut(s)	36, 134
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	60, 348
XapI	RAATTY	2 cut(s)	172, 325
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.