Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018635

Physical Location & Seq

Genomic Coordinates Reverse (-)

56490673 .. 56491702

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG431800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGGCAATCGAACTTGAGCTTGAAGTCACAGTTAAGACTCATGAAGTAAGATCTGAGTATGAGCGGCAAATTGAAGAGCGTTCTATGATGGCCAAGGAAAGAACCAAGCTAATAGAAGAACAACGTAATTTAAGTGATTCCTCAGAAATAATGTCTCCTGGTGCAAGAAATTCAAGGATTTTTGCACTTGAAAACATGCTTGCTACTTCTTCTAGCACCATGGTATCTACGGCATCACAATTGTCAGAAGCAGAAGAGCGCGAGCGGGGTTTCAATGGCAGGGGGCGTTGGAATCAAGTTCGGTCTCTTACAGATGCTTATTTTGGTGTTCTGCATCAATGCTTATTTTTTTATTTTTTTTTTAACTTTTTAGCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

127

Amino Acids

14.79

Weight (kDa)

5.27

Isoelectric Point (pI)

66.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018635)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0231201 RchiOBHm_Chr7g0231211 RchiOBHm_Chr7g0236521
rosa_laevigata	RLG00000001117
rosa_multiflora	Rmu_sc0002449.1_g000009
rosa_samantha	Rh7AG448100 Rh7AG448600 Rh7AG452100 Rh7CG431800
rosa_wichuraiana	Rw7G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	67, 268
AccII	CGCG	1 cut(s)	264
AciI	CCGC	2 cut(s)	67, 268
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	172
AgsI	TTSAA	5 cut(s)	26, 77, 177, 194, 277
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	22, 112
AluI	AGCT	2 cut(s)	22, 112
Alw26I	GTCTC	2 cut(s)	162, 312
AoxI	GGCC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BalI	TGGCCA	1 cut(s)	95
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	162, 312
BfaI	CTAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	3 cut(s)	245, 307, 346
BpuEI	CTTGAG	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	96, 222
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	96, 222
BseMII	CTCAG	2 cut(s)	48, 159
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	162, 312
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	2 cut(s)	67, 268
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	49, 158
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	43
BspQI	GCTCTTC	2 cut(s)	72, 252
BspTNI	GGTCTC	1 cut(s)	312
BsrBI	CCGCTC	2 cut(s)	67, 268
BssECI	CCNNGG	2 cut(s)	96, 222
BssMI	GATC	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	96, 222
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	72, 252
BstC8I	GCNNGC	3 cut(s)	6, 204, 266
BstDEI	CTNAG	2 cut(s)	57, 145
BstDSI	CCRYGG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	2 cut(s)	162, 312
BstMBI	GATC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	6, 204, 266
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	264
CviAII	CATG	3 cut(s)	44, 199, 223
CviJI	RGCY	4 cut(s)	22, 95, 112, 377
CviKI_1	RGCY	4 cut(s)	22, 95, 112, 377
DdeI	CTNAG	2 cut(s)	57, 145
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	72, 252
EarI	CTCTTC	2 cut(s)	72, 252
Eco130I	CCWWGG	2 cut(s)	96, 222
Eco31I	GGTCTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	96, 222
ErhI	CCWWGG	2 cut(s)	96, 222
FaeI	CATG	3 cut(s)	47, 202, 226
FaiI	YATR	7 cut(s)	45, 63, 89, 200, 224, 380, 382
FatI	CATG	3 cut(s)	43, 198, 222
FauI	CCCGC	1 cut(s)	261
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	47, 202, 226
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	40, 140, 295
Hpy188I	TCNGA	3 cut(s)	58, 148, 250
Hpy188III	TCNNGA	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	4, 167, 188, 337
HpyF3I	CTNAG	2 cut(s)	57, 145
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	47, 202, 226
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	53
LguI	GCTCTTC	2 cut(s)	72, 252
LpnPI	CCDG	3 cut(s)	147, 174, 268
LweI	GCATC	3 cut(s)	245, 307, 346
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	55
MbiI	CCGCTC	2 cut(s)	67, 268
MboI	GATC	1 cut(s)	53
MboII	GAAGA	4 cut(s)	89, 131, 204, 269
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	4 cut(s)	72, 130, 172, 242
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	1 cut(s)	154
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	3 cut(s)	36, 134, 366
Msp20I	TGGCCA	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	47, 202, 226
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	43
PciSI	GCTCTTC	2 cut(s)	72, 252
PfeI	GAWTC	2 cut(s)	140, 295
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	53
SapI	GCTCTTC	2 cut(s)	72, 252
SaqAI	TTAA	3 cut(s)	36, 134, 366
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	3 cut(s)	24, 114, 130
SfaNI	GCATC	3 cut(s)	245, 307, 346
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	4 cut(s)	72, 130, 172, 242
SsiI	CCGC	2 cut(s)	67, 268
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	2 cut(s)	96, 222
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	12
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	72, 130, 172, 242
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	140, 295
Tru1I	TTAA	3 cut(s)	36, 134, 366
Tru9I	TTAA	3 cut(s)	36, 134, 366
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	60
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	202
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.