Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0018635

Physical Location & Seq

Genomic Coordinates Forward (+)

61292624 .. 61296383

Gene Structure 3760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG448600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTTGAAAAACAATTAGATAACAATCTTGATTCATATGTACTCTTTAGTAATCACAAACTTGATTCATATGTAGATGTGATAGCTGTAGAAAAAGAGCAAGAACATTCTTCTCTTCAAGAAAAACTGGATCGGGAGCTGAAAGAATTGGACAAGGCTCTCGAGCAAAAGGAGGCTGAAATGAAGCGGTTTACAAGTTCTGATACCTCGGTTCTTAAGCTGTATGAGAAGAAGGTTCATGAGTTAGAACATGAGAAGAAAGCCCTTCAGGCTCTGATGCAGGCAATTGAACTTGAGCTTGAAGTCACAGTTAAGACACATGAAGTAAGATCTGAGTATGAGCGGCAAATTGAAGAGCGTGCTATGATGGCCAAGGAAAGAACCAAGCTAATAGAAGAACAACGTAATTTAAGTGATTCCTCGGAAATAATGTCTCCTGGTGCAAGAAATTCAAGGATTTTTGCACTTGAAAACATGCTTGCTACTTCTTCTAGCACCATGGTATCTATGGCATCACAATTGTCAGAAGCAGAAGAGCGCGACCGGGGTTTCAATGGCAGGGGGCGTTGGAATCAAGTTCGGTCTCTTACAGATGCCAAAATTTTGATGAATCATCTGTTCAACTTAGCTTCTTCCTCCAGGCCAGAAAAAGGGGCACCAGAGGCACCCATCCCTATGAAGCTTCCTAGGGCAATGCGATCAGCTGCATCAAATGGTGGCAACTTATTTAGAGAAAGGAATTCTGATAAAGCAGATCAATCTGGTGTCAATAAGGAGGCCGGTGTTCCTGCTCCAAGAAGTCCTCTGCGGCAGAACAAAACATCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

276

Amino Acids

31.41

Weight (kDa)

6.0

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIF21A_4th	PF25764	26 - 137	6.3e-12	KIF21A-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018635)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0231201 RchiOBHm_Chr7g0231211 RchiOBHm_Chr7g0236521
rosa_laevigata	RLG00000001117
rosa_multiflora	Rmu_sc0002449.1_g000009
rosa_samantha	Rh7AG448100 Rh7AG448600 Rh7AG452100 Rh7CG431800
rosa_wichuraiana	Rw7G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	655, 664
AccBSI	CCGCTC	1 cut(s)	343
AccII	CGCG	1 cut(s)	540
AciI	CCGC	3 cut(s)	187, 343, 808
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	448, 600, 739
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	650
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	9 cut(s)	8, 119, 290, 302, 353, 453, 470, 553, 622
AjnI	CCWGG	2 cut(s)	436, 638
AluBI	AGCT	8 cut(s)	86, 139, 220, 298, 388, 629, 682, 704
AluI	AGCT	8 cut(s)	86, 139, 220, 298, 388, 629, 682, 704
Alw26I	GTCTC	2 cut(s)	438, 588
AlwI	GGATC	1 cut(s)	138
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	369, 641, 777
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	3 cut(s)	448, 600, 739
AspA2I	CCTAGG	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	540
AsuC2I	CCSGG	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	161
AvrII	CCTAGG	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	658
BaeI	ACNNNNGTAYC	4 cut(s)	195, 228, 486, 519
BalI	TGGCCA	1 cut(s)	371
BanI	GGYRCC	2 cut(s)	655, 664
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	2 cut(s)	361, 677
BciT130I	CCWGG	2 cut(s)	438, 640
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	438, 588
BfaI	CTAG	2 cut(s)	492, 687
BfmI	CTRYAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	269
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	3 cut(s)	344, 705, 809
BlnI	CCTAGG	1 cut(s)	686
BlsI	GCNGC	3 cut(s)	345, 706, 810
Bme1390I	CCNGG	3 cut(s)	438, 545, 640
BmeT110I	CYCGRG	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	657, 666
BmrFI	CCNGG	3 cut(s)	438, 545, 640
BmsI	GCATC	4 cut(s)	267, 521, 583, 716
BpmI	CTGGAG	1 cut(s)	622
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	588
BsaJI	CCNNGG	6 cut(s)	207, 372, 420, 498, 544, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	438, 640
BseDI	CCNNGG	6 cut(s)	207, 372, 420, 498, 544, 686
BseGI	GGATG	1 cut(s)	669
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	691
Bsh1236I	CGCG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	544
BshFI	GGCC	3 cut(s)	371, 643, 779
BshNI	GGYRCC	2 cut(s)	655, 664
BsiEI	CGRYCG	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	544, 780
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	2 cut(s)	438, 588
BsnI	GGCC	3 cut(s)	371, 643, 779
Bso31I	GGTCTC	1 cut(s)	588
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	4 cut(s)	130, 329, 698, 754
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	3 cut(s)	187, 343, 808
BspANI	GGCC	3 cut(s)	371, 643, 779
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	540
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	657, 666
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	2 cut(s)	348, 528
BspT107I	GGYRCC	2 cut(s)	655, 664
BspTI	CTTAAG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	588
BsrBI	CCGCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	779
BsrI	ACTGG	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	6 cut(s)	207, 372, 420, 498, 544, 686
BssMI	GATC	4 cut(s)	130, 329, 698, 754
BssT1I	CCWWGG	3 cut(s)	372, 498, 686
Bst2UI	CCWGG	2 cut(s)	438, 640
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	3 cut(s)	120, 348, 528
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	282, 360, 480
BstDEI	CTNAG	2 cut(s)	333, 625
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	669
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	4 cut(s)	133, 332, 701, 757
BstMAI	GTCTC	2 cut(s)	438, 588
BstMBI	GATC	4 cut(s)	130, 329, 698, 754
BstMCI	CGRYCG	1 cut(s)	544
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 368, 662
BstNI	CCWGG	2 cut(s)	438, 640
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	3 cut(s)	436, 543, 638
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	658
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	371, 643, 779
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	669
Cac8I	GCNNGC	3 cut(s)	282, 360, 480
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	540
Cfr10I	RCCGGY	1 cut(s)	779
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	5 cut(s)	239, 251, 320, 475, 499
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	333, 625
DpnI	GATC	4 cut(s)	132, 331, 700, 756
DpnII	GATC	4 cut(s)	130, 329, 698, 754
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	3 cut(s)	120, 348, 528
EarI	CTCTTC	3 cut(s)	120, 348, 528
Eco130I	CCWWGG	3 cut(s)	372, 498, 686
Eco31I	GGTCTC	1 cut(s)	588
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	436, 638
EcoT14I	CCWWGG	3 cut(s)	372, 498, 686
ErhI	CCWWGG	3 cut(s)	372, 498, 686
FaeI	CATG	5 cut(s)	242, 254, 323, 478, 502
FatI	CATG	5 cut(s)	238, 250, 319, 474, 498
FauNDI	CATATG	2 cut(s)	37, 70
Fnu4HI	GCNGC	3 cut(s)	344, 705, 809
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	3 cut(s)	344, 705, 809
FspBI	CTAG	2 cut(s)	492, 687
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	3 cut(s)	344, 705, 809
GsuI	CTGGAG	1 cut(s)	622
HaeIII	GGCC	3 cut(s)	371, 643, 779
HapII	CCGG	2 cut(s)	544, 780
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	5 cut(s)	242, 254, 323, 478, 502
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	5 cut(s)	32, 65, 416, 571, 610
HpaII	CCGG	2 cut(s)	544, 780
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	7 cut(s)	202, 276, 334, 424, 526, 745, 826
Hpy188III	TCNNGA	5 cut(s)	29, 119, 134, 161, 239
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	226, 275
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	280, 443, 464, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 368, 662
HpyF3I	CTNAG	2 cut(s)	333, 625
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	5 cut(s)	242, 254, 323, 478, 502
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	130, 329, 698, 754
LguI	GCTCTTC	2 cut(s)	348, 528
LmnI	GCTCC	2 cut(s)	136, 796
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	4 cut(s)	267, 521, 583, 716
MaeI	CTAG	2 cut(s)	492, 687
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	4 cut(s)	132, 331, 700, 756
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	4 cut(s)	130, 329, 698, 754
MboII	GAAGA	9 cut(s)	102, 107, 241, 268, 365, 407, 480, 545, 624
MfeI	CAATTG	2 cut(s)	285, 518
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	658
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	9 cut(s)	14, 146, 285, 348, 406, 448, 518, 600, 739
MluNI	TGGCCA	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	7 cut(s)	166, 217, 430, 646, 655, 769, 813
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	3 cut(s)	216, 312, 410
MslI	CAYNNNNRTG	1 cut(s)	674
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	2 cut(s)	544, 780
MspR9I	CCNGG	3 cut(s)	438, 545, 640
MunI	CAATTG	2 cut(s)	285, 518
MvaI	CCWGG	2 cut(s)	438, 640
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	269, 368, 662
NciI	CCSGG	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	2 cut(s)	37, 70
NdeII	GATC	4 cut(s)	130, 329, 698, 754
NlaIII	CATG	5 cut(s)	242, 254, 323, 478, 502
NlaIV	GGNNCC	2 cut(s)	657, 666
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	478
PaeR7I	CTCGAG	1 cut(s)	161
PagI	TCATGA	1 cut(s)	238
PciSI	GCTCTTC	2 cut(s)	348, 528
PfeI	GAWTC	5 cut(s)	32, 65, 416, 571, 610
PkrI	GCNGC	3 cut(s)	345, 706, 810
Psp6I	CCWGG	2 cut(s)	436, 638
PspGI	CCWGG	2 cut(s)	436, 638
PspN4I	GGNNCC	2 cut(s)	657, 666
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	674
SapI	GCTCTTC	2 cut(s)	348, 528
SaqAI	TTAA	3 cut(s)	216, 312, 410
SatI	GCNGC	3 cut(s)	344, 705, 809
Sau3AI	GATC	4 cut(s)	130, 329, 698, 754
ScrFI	CCNGG	3 cut(s)	438, 545, 640
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	4 cut(s)	267, 521, 583, 716
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	3 cut(s)	161, 215, 293
SmoI	CTYRAG	3 cut(s)	161, 215, 293
Sse9I	AATT	9 cut(s)	14, 146, 285, 348, 406, 448, 518, 600, 739
SsiI	CCGC	3 cut(s)	187, 343, 808
SspMI	CTAG	2 cut(s)	492, 687
StyD4I	CCNGG	3 cut(s)	436, 543, 638
StyI	CCWWGG	3 cut(s)	372, 498, 686
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	162
TaqII	GACCGA	1 cut(s)	570
TasI	AATT	9 cut(s)	14, 146, 285, 348, 406, 448, 518, 600, 739
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	2 cut(s)	346, 811
TfiI	GAWTC	5 cut(s)	32, 65, 416, 571, 610
Tru1I	TTAA	3 cut(s)	216, 312, 410
Tru9I	TTAA	3 cut(s)	216, 312, 410
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	7 cut(s)	24, 57, 197, 227, 336, 623, 692
Vha464I	CTTAAG	1 cut(s)	215
XapI	RAATTY	3 cut(s)	448, 600, 739
XceI	RCATGY	1 cut(s)	478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XhoI	CTCGAG	1 cut(s)	161
XmaJI	CCTAGG	1 cut(s)	686
XspI	CTAG	2 cut(s)	492, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.