Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018635

Physical Location & Seq

Genomic Coordinates Reverse (-)

10499140 .. 10499709

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGGTTCCAATTATACGGCCAAATCCAATGCACCGCAGCCTAACCAGAGAAAGAAATGGCGAAGAACCACAATCCAACTGGTTACAAATGCTCCGCCTCCCTCGCAGCCAGCAACTGCTGAAGCACCTAAAAGGGCAGATAAAGGGGCACCAGAGGTACCCATCCCTATGAAGCTTCCTCAAGGGGCAGATCAAGGGGCACCAGAGGTACCCATCTCTTTGAAGCTTCCTAAAAGGCCAGAAAAAGGGGCACCAGAGGCACCCATCCCTATGAAGCTTCCTAGGGCAATGCGATCAGCTGCATCAAATGGTGGCAACTTATTTGGAGAAAGGAATTCTGATAAAGCAGATCAAACTGGTGTCAATAAGGAGGCCGGTGTTCCTGCTCCAAGAAGTCCTCTGCGGCAGAACAAAACATCAGATGAGAAGGAGAACTGTGGCATTATTTATACCATTAGTGGCGCTAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

159

Amino Acids

16.85

Weight (kDa)

9.95

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018635)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0231201 RchiOBHm_Chr7g0231211 RchiOBHm_Chr7g0236521
rosa_laevigata	RLG00000001117
rosa_multiflora	Rmu_sc0002449.1_g000009
rosa_samantha	Rh7AG448100 Rh7AG448600 Rh7AG452100 Rh7CG431800
rosa_wichuraiana	Rw7G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	160, 211
AccB1I	GGYRCC	6 cut(s)	151, 160, 202, 211, 253, 262
AciI	CCGC	3 cut(s)	38, 98, 406
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	162, 213
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	5 cut(s)	178, 229, 280, 302, 472
AluI	AGCT	5 cut(s)	178, 229, 280, 302, 472
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	3 cut(s)	21, 239, 375
ApeKI	GCWGC	3 cut(s)	40, 109, 302
ApoI	RAATTY	1 cut(s)	337
Asp718I	GGTACC	2 cut(s)	160, 211
AspA2I	CCTAGG	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	467
AvrII	CCTAGG	1 cut(s)	284
BaeGI	GKGCMC	3 cut(s)	154, 205, 256
BanI	GGYRCC	6 cut(s)	151, 160, 202, 211, 253, 262
BbvI	GCAGC	3 cut(s)	52, 121, 289
BccI	CCATC	3 cut(s)	173, 224, 275
BceAI	ACGGC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	468
BisI	GCNGC	4 cut(s)	41, 110, 303, 407
BlnI	CCTAGG	1 cut(s)	284
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	4 cut(s)	42, 111, 304, 408
BmiI	GGNNCC	7 cut(s)	10, 153, 162, 204, 213, 255, 264
BmsI	GCATC	1 cut(s)	314
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	87, 364
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	165, 267
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	87, 364
BseSI	GKGCMC	3 cut(s)	154, 205, 256
BseXI	GCAGC	3 cut(s)	52, 121, 289
BshFI	GGCC	3 cut(s)	23, 241, 377
BshNI	GGYRCC	6 cut(s)	151, 160, 202, 211, 253, 262
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	248
BsnI	GGCC	3 cut(s)	23, 241, 377
Bsp1286I	GDGCHC	3 cut(s)	154, 205, 256
Bsp143I	GATC	3 cut(s)	193, 296, 352
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	3 cut(s)	38, 98, 406
BspANI	GGCC	3 cut(s)	23, 241, 377
BspLI	GGNNCC	7 cut(s)	10, 153, 162, 204, 213, 255, 264
BspT107I	GGYRCC	6 cut(s)	151, 160, 202, 211, 253, 262
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	87, 364
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	3 cut(s)	193, 296, 352
BssT1I	CCWWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	8, 440
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	165, 267
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	3 cut(s)	196, 299, 355
BstMBI	GATC	3 cut(s)	193, 296, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 260
BstSLI	GKGCMC	3 cut(s)	154, 205, 256
BstV1I	GCAGC	3 cut(s)	52, 121, 289
BsuRI	GGCC	3 cut(s)	23, 241, 377
BtsCI	GGATG	2 cut(s)	165, 267
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	161, 212
CviQI	GTAC	2 cut(s)	161, 212
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	195, 298, 354
DpnII	GATC	3 cut(s)	193, 296, 352
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaiI	YATR	4 cut(s)	18, 173, 275, 453
Fnu4HI	GCNGC	4 cut(s)	41, 110, 303, 407
FokI	GGATG	2 cut(s)	152, 254
Fsp4HI	GCNGC	4 cut(s)	41, 110, 303, 407
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	4 cut(s)	41, 110, 303, 407
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	23, 241, 377
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	1 cut(s)	467
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HindIII	AAGCTT	3 cut(s)	176, 227, 278
HpaII	CCGG	1 cut(s)	378
Hpy188I	TCNGA	2 cut(s)	343, 424
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	2 cut(s)	8, 440
HpyCH4V	TGCA	2 cut(s)	35, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 260
HpyF3I	CTNAG	1 cut(s)	468
HspAI	GCGC	1 cut(s)	465
KpnI	GGTACC	2 cut(s)	164, 215
Kzo9I	GATC	3 cut(s)	193, 296, 352
LmnI	GCTCC	2 cut(s)	100, 394
Lsp1109I	GCAGC	3 cut(s)	52, 121, 289
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	195, 298, 354
MboI	GATC	3 cut(s)	193, 296, 352
MboII	GAAGA	1 cut(s)	78
MhlI	GDGCHC	3 cut(s)	154, 205, 256
MluCI	AATT	2 cut(s)	13, 337
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	8 cut(s)	111, 115, 151, 192, 202, 253, 367, 411
MslI	CAYNNNNRTG	2 cut(s)	170, 272
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	106, 260
NdeII	GATC	3 cut(s)	193, 296, 352
NlaIV	GGNNCC	7 cut(s)	10, 153, 162, 204, 213, 255, 264
PkrI	GCNGC	4 cut(s)	42, 111, 304, 408
PspN4I	GGNNCC	7 cut(s)	10, 153, 162, 204, 213, 255, 264
PstNI	CAGNNNCTG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	162, 213
RsaNI	GTAC	2 cut(s)	161, 212
RseI	CAYNNNNRTG	2 cut(s)	170, 272
SatI	GCNGC	4 cut(s)	41, 110, 303, 407
Sau3AI	GATC	3 cut(s)	193, 296, 352
SduI	GDGCHC	3 cut(s)	154, 205, 256
SetI	ASST	8 cut(s)	133, 162, 180, 213, 231, 282, 304, 474
SfaNI	GCATC	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	170, 272
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	13, 337
SsiI	CCGC	3 cut(s)	38, 98, 406
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	8, 440
TasI	AATT	2 cut(s)	13, 337
TauI	GCSGC	1 cut(s)	409
TseI	GCWGC	3 cut(s)	40, 109, 302
TspDTI	ATGAA	2 cut(s)	188, 290
XapI	RAATTY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmaJI	CCTAGG	1 cut(s)	284
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.