RchiOBHm_Chr7g0231861

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
55673228 .. 55675648
2421 bp
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UTR
Exon/CDS
Intron
PRQ20779

Sequence Viewer

Length: 174 bp
ATGTCAAATTTCCGAAATGGGTGCAATTTTGCAGCTGGAAGGGCTACTACACTTCCAGCAACTGCAACATCTATCTGCCCCTTTTCATTTGGGATTCAGGTCTCTCAGTTTTTGCGATTCAAAGCCCAGGCTCTTCAATTGCTAGCTGCTAAAAAGCGACAGCTCCTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.23

Weight (kDa)

11.58

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019032)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 7
AgsI TTSAA 2 cut(s) 121, 137
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 35, 146, 163
AluI AGCT 3 cut(s) 35, 146, 163
Alw26I GTCTC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 32, 146
ApoI RAATTY 1 cut(s) 7
AsuNHI GCTAGC 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
BbvI GCAGC 2 cut(s) 44, 133
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 143
BisI GCNGC 2 cut(s) 33, 147
BlsI GCNGC 2 cut(s) 34, 148
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BmtI GCTAGC 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 44, 133
BsmAI GTCTC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 118
BspOI GCTAGC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 44, 133
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 62
CviJI RGCY 6 cut(s) 35, 44, 125, 131, 146, 163
CviKI_1 RGCY 6 cut(s) 35, 44, 125, 131, 146, 163
DdeI CTNAG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 33, 147
Fsp4HI GCNGC 2 cut(s) 33, 147
FspBI CTAG 1 cut(s) 143
GluI GCNGC 2 cut(s) 33, 147
HinfI GANTC 2 cut(s) 94, 117
Hpy188I TCNGA 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 24, 32, 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 105
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 5 cut(s) 21, 69, 83, 113, 140
Lsp1109I GCAGC 2 cut(s) 44, 133
MaeI CTAG 1 cut(s) 143
MboII GAAGA 1 cut(s) 125
MfeI CAATTG 1 cut(s) 137
MluCI AATT 3 cut(s) 7, 25, 137
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 41
NheI GCTAGC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 94, 117
PkrI GCNGC 2 cut(s) 34, 148
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 138
SatI GCNGC 2 cut(s) 33, 147
ScrFI CCNGG 1 cut(s) 128
SetI ASST 4 cut(s) 37, 102, 148, 165
SgeI CNNG 6 cut(s) 48, 68, 110, 139, 140, 155
Sse9I AATT 3 cut(s) 7, 25, 137
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 126
TasI AATT 3 cut(s) 7, 25, 137
TfiI GAWTC 2 cut(s) 94, 117
TseI GCWGC 2 cut(s) 32, 146
TspDTI ATGAA 1 cut(s) 75
XapI RAATTY 1 cut(s) 7
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.