Rh1DG073400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
13388032 .. 13391011
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG073400.1

Sequence Viewer

Length: 276 bp
ATGGCATTTGGTAAGAAGTCGAAATGGAGGTCACCGAATTCCAGAAGAGCAGACGCTGTCCAAGTGAATTGCGTCAACAACCCCTCAAATGAGATGCCGAATGAGCTGTTTCCTGCTGCCATTGATGCGACTGACATGACGGAATCAACCGAGGACACCTCTAAAGAGTTAATGCAACTGACTAGAAAGGGAATCAAGTTGATCTTGCAGCAGATGAAGCCGGAGGGAGGAACTCGAATGGATGAGAAGCTTACCCAAATTGGTTTGCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

8.85

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019032)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 227
AluBI AGCT 2 cut(s) 106, 250
AluI AGCT 2 cut(s) 106, 250
AlwNI CAGNNNCTG 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 116, 208
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AsuHPI GGTGA 1 cut(s) 24
BbvI GCAGC 2 cut(s) 103, 220
BfaI CTAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 117, 209
BlsI GCNGC 2 cut(s) 118, 210
BmsI GCATC 2 cut(s) 84, 115
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 103, 220
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 227
Bsp143I GATC 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 40
BstEII GGTNACC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 103, 125, 217
BstPI GGTNACC 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 103, 220
BtsCI GGATG 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 56
CseI GACGC 2 cut(s) 61, 62
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 106, 220, 250
CviKI_1 RGCY 3 cut(s) 106, 220, 250
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 37
FaeI CATG 1 cut(s) 139
FaiI YATR 1 cut(s) 137
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 117, 209
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 117, 209
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 117, 209
HapII CCGG 1 cut(s) 221
HgaI GACGC 2 cut(s) 61, 62
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 143, 192
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 175, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 125, 217
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 1 cut(s) 201
LguI GCTCTTC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 55, 126, 234
Lsp1109I GCAGC 2 cut(s) 103, 220
LweI GCATC 2 cut(s) 84, 115
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 1 cut(s) 57
MluCI AATT 3 cut(s) 37, 67, 258
MnlI CCTC 6 cut(s) 21, 94, 145, 169, 217, 221
MseI TTAA 1 cut(s) 170
MspI CCGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 103, 125, 217
NdeII GATC 1 cut(s) 201
NlaIII CATG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 143, 192
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 118, 210
PspEI GGTNACC 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 56
PsyI GACNNNGTC 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 117, 209
Sau3AI GATC 1 cut(s) 201
SetI ASST 4 cut(s) 32, 108, 161, 252
SfaNI GCATC 2 cut(s) 84, 115
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 3 cut(s) 37, 67, 258
SspMI CTAG 1 cut(s) 183
TaqI TCGA 2 cut(s) 20, 235
TasI AATT 3 cut(s) 37, 67, 258
TfiI GAWTC 2 cut(s) 143, 192
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 116, 208
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 155
Tth111I GACNNNGTC 1 cut(s) 56
XapI RAATTY 1 cut(s) 37
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.