Rh1BG185100

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
29887643 .. 29894287
6645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG185100.1

Sequence Viewer

Length: 411 bp
ATGTGTTGCATGGTTGGCATGCCAAGTTTCCGAAATGGGTGCAATTTCGCAGCTGGAGGGGCTGCTACACTTCCGGCAACTGCAACATCTGTCTGCCCCTTTTCATTTGGGATTCAGGTCTCCCAGTTTTTGCGATTCAAAGTCCAGGCTTTTCAATTGCTAGCTGCTAAAGGTAAGGAACTTGAGAATTATCTACCCTCAGAAGATTCCTTTCAGAAGGGGCTTTACGTCAACAGGCTCTCAAATGAGATGCCGAACGAGCTGTTTCTTGCCGCCAATGATGCAACTGACATGAAGAAATCAACAGAGGACACTTTTAAGGAGTTAAAAGTGATTGAGGTTGATAATGTTATGGGCTCAAGCAGGGTTGATGAAGATGCTGAACCTGTTTTACAATATGGACATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.97

Weight (kDa)

4.97

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019032)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AgsI TTSAA 2 cut(s) 139, 155
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 3 cut(s) 53, 164, 262
AluI AGCT 3 cut(s) 53, 164, 262
Alw26I GTCTC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 50, 62, 164
AsuNHI GCTAGC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BbvI GCAGC 3 cut(s) 49, 62, 151
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 161
BisI GCNGC 4 cut(s) 51, 63, 165, 273
BlsI GCNGC 4 cut(s) 52, 64, 166, 274
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 3 cut(s) 240, 271, 367
BmtI GCTAGC 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 203, 343
BsaI GGTCTC 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 49, 62, 151
BsiSI CCGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 359
BspACI CCGC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 212
BspOI GCTAGC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 20, 162
BstDEI CTNAG 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 15, 59, 259, 281
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 49, 62, 151
Cac8I GCNNGC 2 cut(s) 20, 162
CviAII CATG 3 cut(s) 10, 19, 292
CviJI RGCY 8 cut(s) 53, 62, 149, 164, 223, 238, 262, 357
CviKI_1 RGCY 8 cut(s) 53, 62, 149, 164, 223, 238, 262, 357
DdeI CTNAG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 359
FaeI CATG 3 cut(s) 13, 22, 295
FaiI YATR 6 cut(s) 11, 20, 293, 353, 399, 405
FatI CATG 3 cut(s) 9, 18, 291
Fnu4HI GCNGC 4 cut(s) 51, 63, 165, 273
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 4 cut(s) 51, 63, 165, 273
FspBI CTAG 1 cut(s) 161
GluI GCNGC 4 cut(s) 51, 63, 165, 273
GsuI CTGGAG 1 cut(s) 75
HapII CCGG 1 cut(s) 74
Hin1II CATG 3 cut(s) 13, 22, 295
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 112, 135, 206
HpaII CCGG 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 32, 202, 216
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 9, 42, 83, 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 59, 259, 281
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 3 cut(s) 13, 22, 295
LpnPI CCDG 9 cut(s) 39, 87, 101, 131, 137, 158, 220, 349, 399
Lsp1109I GCAGC 3 cut(s) 49, 62, 151
LweI GCATC 3 cut(s) 240, 271, 367
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 228
MboII GAAGA 3 cut(s) 215, 307, 386
MfeI CAATTG 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 3 cut(s) 43, 155, 187
MnlI CCTC 4 cut(s) 50, 208, 301, 331
MseI TTAA 2 cut(s) 318, 326
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 4 cut(s) 15, 59, 259, 281
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 3 cut(s) 13, 22, 295
NspI RCATGY 1 cut(s) 22
PaeI GCATGC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 112, 135, 206
PkrI GCNGC 4 cut(s) 52, 64, 166, 274
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PsrI GAACNNNNNNTAC 2 cut(s) 375, 407
PvuII CAGCTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 318, 326
SatI GCNGC 4 cut(s) 51, 63, 165, 273
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 359
SetI ASST 9 cut(s) 55, 120, 166, 175, 231, 264, 342, 388, 410
SfaNI GCATC 3 cut(s) 240, 271, 367
SmlI CTYRAG 2 cut(s) 182, 358
SmoI CTYRAG 2 cut(s) 182, 358
SphI GCATGC 1 cut(s) 22
Sse9I AATT 3 cut(s) 43, 155, 187
SsiI CCGC 1 cut(s) 273
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 231
TasI AATT 3 cut(s) 43, 155, 187
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 3 cut(s) 112, 135, 206
Tru1I TTAA 2 cut(s) 318, 326
Tru9I TTAA 2 cut(s) 318, 326
TseI GCWGC 3 cut(s) 50, 62, 164
TspDTI ATGAA 3 cut(s) 93, 308, 387
XceI RCATGY 1 cut(s) 22
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.