Rh5CG209300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
21120705 .. 21124054
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG209300.1

Sequence Viewer

Length: 246 bp
ATGGCCTTTGGGAAGAAGTCAAAATCGAGGTCACCCAATTCCAGACGAGGGGACGCTGCCCAAGTGAATTGCGTCAACAACCCCTCAAATGAGATGCCGAATGAGCTGTTTCCTGCTGCCATTGATGCGACTGACATGACGGAATCAACCGAGGACACCTCTAAAGAGTTAATTTTATGCAACTATTTATTGGTGTCTTCAGGTAGGGGTTGTATTGGTTCTTCTCCAATTGTCAGTGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.65

Weight (kDa)

4.93

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019032)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 56, 116
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AsuHPI GGTGA 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 205, 237
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 43, 103
BisI GCNGC 2 cut(s) 57, 117
BlsI GCNGC 2 cut(s) 58, 118
BmsI GCATC 2 cut(s) 84, 115
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 43, 103
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 103, 125
BstPI GGTNACC 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 43, 103
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 241
CseI GACGC 2 cut(s) 61, 62
CviAII CATG 1 cut(s) 136
CviJI RGCY 2 cut(s) 5, 106
CviKI_1 RGCY 2 cut(s) 5, 106
Eco57I CTGAAG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 137, 178, 244
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 57, 117
Fsp4HI GCNGC 2 cut(s) 57, 117
GluI GCNGC 2 cut(s) 57, 117
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 2 cut(s) 61, 62
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 143
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 125
Hsp92II CATG 1 cut(s) 139
LpnPI CCDG 3 cut(s) 55, 126, 186
Lsp1109I GCAGC 2 cut(s) 43, 103
LweI GCATC 2 cut(s) 84, 115
MaeIII GTNAC 1 cut(s) 30
MboII GAAGA 3 cut(s) 25, 189, 213
MfeI CAATTG 1 cut(s) 228
MluCI AATT 5 cut(s) 37, 67, 171, 228, 239
MnlI CCTC 5 cut(s) 21, 41, 94, 145, 169
MseI TTAA 1 cut(s) 170
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 103, 125
NlaIII CATG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 58, 118
PspEI GGTNACC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 57, 117
SetI ASST 4 cut(s) 32, 108, 161, 205
SfaNI GCATC 2 cut(s) 84, 115
SgeI CNNG 8 cut(s) 39, 54, 59, 74, 125, 148, 163, 213
Sse9I AATT 5 cut(s) 37, 67, 171, 228, 239
TaqI TCGA 1 cut(s) 26
TasI AATT 5 cut(s) 37, 67, 171, 228, 239
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 56, 116
Tsp45I GTSAC 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.