Rh6CG200000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
33463430 .. 33464052
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG200000.1

Sequence Viewer

Length: 270 bp
ATGGTATTTGGTAAGAAGTCGAAATCGAGGTCACCGAATTCCAGTAGAGGAGTCACTGTCCAAGTGAATTGCGTACAAACAGTGAGGACGGAGCCCCAGTGTAAACAGAGAAGAGCTAAGGGAGTTGAGAAGGAAACCAGTGGGCATGAAATATGCCCTAATCTGGGTGGAGAAACAGATGTTCTGAAGGGAGATATGACACATTATGGCGCATTACGATGTGATCCGTGTAAAATGAATACATATCATCGGTCAGAAGGGTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.83

Weight (kDa)

9.3

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019032)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 163, 164
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AlwI GGATC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AspLEI GCGC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 24
BanII GRGCYC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 117
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 164
Bse1I ACTGG 3 cut(s) 42, 97, 138
BseLI CCNNNNNNNGG 2 cut(s) 163, 164
BseNI ACTGG 3 cut(s) 42, 97, 138
BseRI GAGGAG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 163, 164
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 106
BsrI ACTGG 3 cut(s) 42, 97, 138
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 58, 82
Bst6I CTCTTC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 117
BstEII GGTNACC 1 cut(s) 30
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstPI GGTNACC 1 cut(s) 30
BtsIMutI CAGTG 4 cut(s) 54, 87, 104, 145
CfoI GCGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 74
CviAII CATG 1 cut(s) 146
CviJI RGCY 2 cut(s) 94, 116
CviKI_1 RGCY 2 cut(s) 94, 116
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 206
Eco91I GGTNACC 1 cut(s) 30
EcoO65I GGTNACC 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 149
FaiI YATR 5 cut(s) 147, 154, 197, 207, 244
FatI CATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 96
GlaI GCGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 212
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 1 cut(s) 51
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 186, 256
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 124, 181, 251
HpyCH4III ACNGT 2 cut(s) 58, 82
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 55, 110, 149, 151
MaeIII GTNAC 2 cut(s) 30, 52
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 37, 67
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 3 cut(s) 21, 41, 78
MslI CAYNNNNRTG 1 cut(s) 217
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 30, 52
PciSI GCTCTTC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 93
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 106
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 60
SduI GDGCHC 1 cut(s) 96
SetI ASST 2 cut(s) 32, 118
SgeI CNNG 8 cut(s) 39, 54, 74, 109, 150, 158, 176, 240
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 2 cut(s) 37, 67
TaaI ACNGT 2 cut(s) 58, 82
TaqI TCGA 2 cut(s) 20, 26
TaqII GACCGA 1 cut(s) 240
TasI AATT 2 cut(s) 37, 67
TscAI CASTG 4 cut(s) 61, 87, 104, 145
TseFI GTSAC 2 cut(s) 30, 52
Tsp45I GTSAC 2 cut(s) 30, 52
TspDTI ATGAA 2 cut(s) 162, 251
TspGWI ACGGA 2 cut(s) 104, 216
TspRI CASTG 4 cut(s) 61, 87, 104, 145
XapI RAATTY 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.