Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018181

Physical Location & Seq

Genomic Coordinates Forward (+)

56607114 .. 56607961

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20838

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGCGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGGTTCCCATTGCTATTGGAGGCCACGGACTGGCACCTGGTTTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTTCCCAAGAGAACATAGGGAAAAGAATTCTCACTCTATTATTTCCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

111

Amino Acids

11.93

Weight (kDa)

9.51

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	1 - 53	3.1e-12	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406771 RchiOBHm_Chr7g0227841 RchiOBHm_Chr7g0232491
rosa_laevigata	RLG00000021654 RLG00000031617
rosa_roxburghii	Rroxscaffold_1G00031370 Rroxscaffold_4G00280740 Rroxscaffold_4G00309570 Rroxscaffold_6G00413370
rosa_rugosa	Rorug02G0290200
rosa_samantha	Rh4CG164400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	2 cut(s)	97, 208
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	306, 329
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	187, 227
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	3 cut(s)	117, 178, 276
ApeKI	GCWGC	2 cut(s)	140, 245
ApoI	RAATTY	2 cut(s)	306, 329
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	127, 232
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	2 cut(s)	145, 255
BisI	GCNGC	3 cut(s)	98, 141, 246
BlsI	GCNGC	3 cut(s)	99, 142, 247
Bme1390I	CCNGG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	4 cut(s)	162, 192, 206, 279
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 227
Bse1I	ACTGG	2 cut(s)	109, 192
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	2 cut(s)	187, 227
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	109, 192
BseXI	GCAGC	2 cut(s)	127, 232
BshFI	GGCC	3 cut(s)	119, 180, 278
BshNI	GGYRCC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	187, 227
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	119, 180, 278
Bsp143I	GATC	3 cut(s)	145, 214, 255
BspACI	CCGC	2 cut(s)	97, 208
BspANI	GGCC	3 cut(s)	119, 180, 278
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	162, 192, 206, 279
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	109, 192
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	145, 214, 255
Bst2UI	CCWGG	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstBAI	YACGTR	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	3 cut(s)	148, 217, 258
BstMBI	GATC	3 cut(s)	145, 214, 255
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 35, 137, 149, 242
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	127, 232
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	119, 180, 278
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	277
CsiI	ACCWGGT	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	65
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	2 cut(s)	91, 266
CviJI	RGCY	5 cut(s)	119, 140, 152, 180, 278
CviKI_1	RGCY	5 cut(s)	119, 140, 152, 180, 278
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	3 cut(s)	147, 216, 257
DpnII	GATC	3 cut(s)	145, 214, 255
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	94, 269
FaiI	YATR	5 cut(s)	92, 102, 254, 267, 296
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	90, 265
FbaI	TGATCA	2 cut(s)	145, 255
Fnu4HI	GCNGC	3 cut(s)	98, 141, 246
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	98, 141, 246
GluI	GCNGC	3 cut(s)	98, 141, 246
HaeIII	GGCC	3 cut(s)	119, 180, 278
Hin1II	CATG	2 cut(s)	94, 269
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	45, 222
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	135, 248, 265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 35, 137, 149, 242
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	94, 269
Ksp22I	TGATCA	2 cut(s)	145, 255
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	145, 214, 255
LpnPI	CCDG	5 cut(s)	47, 90, 173, 180, 207
Lsp1109I	GCAGC	2 cut(s)	127, 232
LweI	GCATC	1 cut(s)	25
MabI	ACCWGGT	1 cut(s)	193
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	3 cut(s)	147, 216, 257
MboI	GATC	3 cut(s)	145, 214, 255
MboII	GAAGA	1 cut(s)	209
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	3 cut(s)	123, 306, 329
MnlI	CCTC	3 cut(s)	109, 170, 268
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	26, 35, 137, 149, 242
NdeII	GATC	3 cut(s)	145, 214, 255
NlaIII	CATG	2 cut(s)	94, 269
NlaIV	GGNNCC	4 cut(s)	162, 192, 206, 279
NmuCI	GTSAC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	99, 142, 247
Ppu21I	YACGTR	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	4 cut(s)	162, 192, 206, 279
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	98, 141, 246
Sau3AI	GATC	3 cut(s)	145, 214, 255
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	6 cut(s)	66, 70, 78, 154, 162, 196
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	123, 306, 329
SsiI	CCGC	2 cut(s)	97, 208
StyD4I	CCNGG	1 cut(s)	193
TaiI	ACGT	1 cut(s)	70
TasI	AATT	3 cut(s)	123, 306, 329
TauI	GCSGC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	2 cut(s)	140, 245
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	187
XapI	RAATTY	2 cut(s)	306, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.