Rorug02G0290200

2,3-bisphosphoglycerate-independent phosphoglycerate

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
31787854 .. 31793890
6037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0290200.1

Sequence Viewer

Length: 1164 bp
ATGGCGGCCATGCTCATTCGCTTACCATTCTTTTCCGGTCTCAGAACTGCTAGAGAAATGAGGAATATCATGACAGATGTTATTCAATCAAGTAGCACAAATTGGAGATTACCAAGCAGTCAAAGAAGAGTCATTTCTTTTCGTAGCTCAGTGAAGTCTGTCCAAACCTCAACCCAAGTATCTGTCCCAGGCACTTTGTCGACAAGAGAAGGAAAAGTGCCTTCGAGCTTCTTGAGGGACAAGAAGTTGGCTCCTGATTCAGATCCGCCTAGCATGCAAGATGTCAACCTTTTGTATCACTTTTTCGATCAAAGTACTAAGCTAGTGGTATTGACTGGAGCTGGAATTAGCACAGAATGTGGTATTCCCGACTACAGAAGTCCAAATGGAGCTTACAGTTCTGGTTTCAAACCAATTACCCATCAGGAGTTTCTCCGCTCTAGTCGGGCTCGTAGGCGTTATTGGGCAAGGAGTTATGCTGGGTGGAGAAGATTTAATGCTGCGCAGCCCAGTGCAGCTCATATTGCTTTATCATCACTAGAAAAAGCTGGTCGGGTTAACTTGATGATTACGCAAAATGTTGATAGGTTGCATCACCGTGCTGGTAGCAATCCAGTTGAATTGCATGGAACTGTTTATTCCGTGATTTGTATAGATTGTGGTTTTTCCTTTTGCCGGCATATATTTCAGGATCAACTTAAGGCCCTTAATCCAAAGTGGGCAGAGGCAATCGAAAGTTTGGACTATGGCAACCCTGGATCAGACAAGAGCTTTGGCATGAAGCAAAGGCCTGATGGTGACATTGAGATTGATGAAAAATTTTGGGAGGAGAATTTTCACATCCCTACATGCCAAAAGTGCAATGGAGTGCTGAAGCCTGATGTTGTCTTCTTTGGTGACAATGTCCCCAAGGACAGAGCTGATAAGGCAATCCAAGCTGCAAAAGAATGTGATGCTTTTCTTGTACTAGGATCATCTGTAATGACCATGTCTGCTTTTCGACTTGTCAGAGCTGCACATAAGGCAGGTGCTGCCACTGCAATTGTAAATGTTGGAGTGACTCGAGCTGATAATTTTGTACCTTTGAAAATCAATGCTCGACTAGGAGAGATTTTGCCAAGAGTGCTTCACATGGGATCCCTCAGCGTCCCTGCATCCAGGTGA

Protein Analysis

387

Amino Acids

42.91

Weight (kDa)

9.66

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 113 - 328 1.3e-41 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1016
Acc16I TGCGCA 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 1016
AccBSI CCGCTC 1 cut(s) 438
AccI GTMKAC 1 cut(s) 200
AciI CCGC 3 cut(s) 5, 266, 436
AclWI GGATC 6 cut(s) 257, 699, 766, 979, 1131, 1144
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 818, 832
AcuI CTGAAG 1 cut(s) 893
AfaI GTAC 3 cut(s) 316, 966, 1080
AfiI CCNNNNNNNGG 1 cut(s) 675
AflII CTTAAG 1 cut(s) 698
AgsI TTSAA 4 cut(s) 86, 409, 620, 1087
AjnI CCWGG 3 cut(s) 187, 754, 1157
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 6 cut(s) 257, 699, 766, 979, 1131, 1144
AlwNI CAGNNNCTG 1 cut(s) 1031
Ama87I CYCGRG 1 cut(s) 1062
AoxI GGCC 3 cut(s) 6, 702, 788
ApeKI GCWGC 6 cut(s) 500, 505, 515, 938, 1013, 1031
ApoI RAATTY 2 cut(s) 818, 832
ArsI GACNNNNNNTTYG 2 cut(s) 755, 787
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 3 cut(s) 587, 809, 908
AvaI CYCGRG 1 cut(s) 1062
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BamHI GGATCC 1 cut(s) 1136
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 880
BbvCI CCTCAGC 1 cut(s) 1142
BbvI GCAGC 6 cut(s) 487, 517, 527, 925, 1000, 1018
BccI CCATC 2 cut(s) 429, 788
BciT130I CCWGG 3 cut(s) 189, 756, 1159
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 7 cut(s) 51, 270, 323, 441, 539, 968, 1103
BfmI CTRYAG 1 cut(s) 373
BfrI CTTAAG 1 cut(s) 698
BfuAI ACCTGC 1 cut(s) 1016
BisI GCNGC 7 cut(s) 6, 501, 506, 516, 939, 1014, 1032
BlsI GCNGC 7 cut(s) 7, 502, 507, 517, 940, 1015, 1033
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 189, 756, 1159
BmeT110I CYCGRG 1 cut(s) 1062
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 252, 1138
BmrFI CCNGG 3 cut(s) 189, 756, 1159
BmrI ACTGGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 601, 943
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 880
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 1142
BpuEI CTTGAG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 187, 754, 909
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 1 cut(s) 675
Bse1I ACTGG 3 cut(s) 340, 510, 614
Bse3DI GCAATG 1 cut(s) 868
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 3 cut(s) 189, 756, 1159
BseDI CCNNGG 3 cut(s) 187, 754, 909
BseGI GGATG 2 cut(s) 840, 1154
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 55, 162, 1156
BseNI ACTGG 3 cut(s) 340, 510, 614
BseRI GAGGAG 1 cut(s) 842
BseXI GCAGC 6 cut(s) 487, 517, 527, 925, 1000, 1018
BseYI CCCAGC 1 cut(s) 479
BsgI GTGCAG 2 cut(s) 534, 999
BshFI GGCC 3 cut(s) 8, 704, 790
BsiHKCI CYCGRG 1 cut(s) 1062
BsiSI CCGG 2 cut(s) 36, 676
BslFI GGGAC 4 cut(s) 170, 251, 890, 1133
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 4 cut(s) 170, 251, 890, 1133
BsnI GGCC 3 cut(s) 8, 704, 790
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 1062
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
BspACI CCGC 3 cut(s) 5, 266, 436
BspANI GGCC 3 cut(s) 8, 704, 790
BspCNI CTCAG 3 cut(s) 54, 161, 1155
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 252, 1138
BspMI ACCTGC 1 cut(s) 1016
BspPI GGATC 6 cut(s) 257, 699, 766, 979, 1131, 1144
BspTI CTTAAG 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 868
BsrFI RCCGGY 1 cut(s) 675
BsrI ACTGG 3 cut(s) 340, 510, 614
BssAI RCCGGY 1 cut(s) 675
BssECI CCNNGG 3 cut(s) 187, 754, 909
BssMI GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
BssT1I CCWWGG 1 cut(s) 909
Bst2UI CCWGG 3 cut(s) 189, 756, 1159
Bst4CI ACNGT 3 cut(s) 398, 599, 634
Bst6I CTCTTC 1 cut(s) 121
BstAFI CTTAAG 1 cut(s) 698
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 2 cut(s) 275, 677
BstDEI CTNAG 4 cut(s) 41, 148, 318, 1142
BstF5I GGATG 2 cut(s) 840, 1154
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 6 cut(s) 265, 310, 694, 761, 974, 1139
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
BstMWI GCNNNNNNNGC 9 cut(s) 274, 524, 858, 926, 935, 1022, 1031, 1037, 1123
BstNI CCWGG 3 cut(s) 189, 756, 1159
BstNSI RCATGY 2 cut(s) 277, 852
BstSCI CCNGG 3 cut(s) 187, 754, 1157
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 6 cut(s) 487, 517, 527, 925, 1000, 1018
BstV2I GAAGAC 1 cut(s) 880
BstX2I RGATCY 2 cut(s) 262, 1136
BstYI RGATCY 2 cut(s) 262, 1136
BsuRI GGCC 3 cut(s) 8, 704, 790
BtsCI GGATG 2 cut(s) 840, 1154
BtsI GCAGTG 1 cut(s) 1035
BtsIMutI CAGTG 3 cut(s) 156, 517, 1035
BveI ACCTGC 1 cut(s) 1016
Cac8I GCNNGC 2 cut(s) 275, 677
CaiI CAGNNNCTG 1 cut(s) 1031
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 675
Cfr13I GGNCC 1 cut(s) 703
CseI GACGC 1 cut(s) 1135
Csp6I GTAC 3 cut(s) 315, 965, 1079
CspCI CAANNNNNGTGG 2 cut(s) 1024, 1059
CviAII CATG 8 cut(s) 10, 70, 274, 626, 778, 849, 988, 1132
CviQI GTAC 3 cut(s) 315, 965, 1079
DdeI CTNAG 4 cut(s) 41, 148, 318, 1142
DpnI GATC 6 cut(s) 264, 309, 693, 760, 973, 1138
DpnII GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 909
Eco147I AGGCCT 1 cut(s) 790
Eco24I GRGCYC 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 893
Eco88I CYCGRG 1 cut(s) 1062
EcoO109I RGGNCCY 1 cut(s) 703
EcoRII CCWGG 3 cut(s) 187, 754, 1157
EcoT14I CCWWGG 1 cut(s) 909
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 909
FaeI CATG 8 cut(s) 13, 73, 277, 629, 781, 852, 991, 1135
FaqI GGGAC 4 cut(s) 170, 251, 890, 1133
FatI CATG 8 cut(s) 9, 69, 273, 625, 777, 848, 987, 1131
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 7 cut(s) 6, 501, 506, 516, 939, 1014, 1032
FokI GGATG 2 cut(s) 827, 1141
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 7 cut(s) 6, 501, 506, 516, 939, 1014, 1032
FspBI CTAG 7 cut(s) 51, 270, 323, 441, 539, 968, 1103
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 1 cut(s) 504
GluI GCNGC 7 cut(s) 6, 501, 506, 516, 939, 1014, 1032
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 3 cut(s) 8, 704, 790
HapII CCGG 2 cut(s) 36, 676
HgaI GACGC 1 cut(s) 1135
HhaI GCGC 1 cut(s) 505
Hin1II CATG 8 cut(s) 13, 73, 277, 629, 781, 852, 991, 1135
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 3 cut(s) 201, 286, 559
HindII GTYRAC 3 cut(s) 201, 286, 559
HinfI GANTC 3 cut(s) 129, 257, 1060
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 36, 676
HphI GGTGA 3 cut(s) 587, 809, 908
Hpy166II GTNNAC 3 cut(s) 201, 286, 559
Hpy188I TCNGA 4 cut(s) 44, 262, 763, 1010
Hpy188III TCNNGA 6 cut(s) 70, 232, 254, 368, 425, 689
Hpy8I GTNNAC 3 cut(s) 201, 286, 559
HpyAV CCTTC 2 cut(s) 203, 231
HpyCH4III ACNGT 3 cut(s) 398, 599, 634
HpyCH4V TGCA 9 cut(s) 277, 515, 592, 625, 861, 941, 1016, 1040, 1154
HpyF10VI GCNNNNNNNGC 9 cut(s) 274, 524, 858, 926, 935, 1022, 1031, 1037, 1123
HpyF3I CTNAG 4 cut(s) 41, 148, 318, 1142
Hsp92II CATG 8 cut(s) 13, 73, 277, 629, 781, 852, 991, 1135
HspAI GCGC 1 cut(s) 503
KroI GCCGGC 1 cut(s) 675
KroNI GCCGGC 1 cut(s) 677
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
LmnI GCTCC 3 cut(s) 256, 338, 389
Lsp1109I GCAGC 6 cut(s) 487, 517, 527, 925, 1000, 1018
LweI GCATC 2 cut(s) 601, 943
MaeI CTAG 7 cut(s) 51, 270, 323, 441, 539, 968, 1103
MaeIII GTNAC 3 cut(s) 797, 896, 1057
MalI GATC 6 cut(s) 264, 309, 693, 760, 973, 1138
MbiI CCGCTC 1 cut(s) 438
MboI GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
MboII GAAGA 3 cut(s) 138, 501, 880
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 2 cut(s) 262, 1136
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 8 cut(s) 100, 345, 414, 620, 818, 832, 1041, 1072
MlyI GAGTC 2 cut(s) 138, 1054
MmeI TCCRAC 1 cut(s) 1033
MnlI CCTC 6 cut(s) 54, 178, 228, 718, 820, 1151
MroNI GCCGGC 1 cut(s) 675
MseI TTAA 4 cut(s) 495, 558, 699, 708
MslI CAYNNNNRTG 2 cut(s) 597, 1159
MspCI CTTAAG 1 cut(s) 698
MspI CCGG 2 cut(s) 36, 676
MspR9I CCNGG 3 cut(s) 189, 756, 1159
MunI CAATTG 1 cut(s) 1041
MvaI CCWGG 3 cut(s) 189, 756, 1159
MwoI GCNNNNNNNGC 9 cut(s) 274, 524, 858, 926, 935, 1022, 1031, 1037, 1123
NaeI GCCGGC 1 cut(s) 677
NdeII GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
NgoMIV GCCGGC 1 cut(s) 675
NlaIII CATG 8 cut(s) 13, 73, 277, 629, 781, 852, 991, 1135
NlaIV GGNNCC 2 cut(s) 252, 1138
NmuCI GTSAC 3 cut(s) 797, 896, 1057
NsbI TGCGCA 1 cut(s) 504
NspI RCATGY 2 cut(s) 277, 852
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 1062
PagI TCATGA 1 cut(s) 69
PaqCI CACCTGC 1 cut(s) 1016
PceI AGGCCT 1 cut(s) 790
PdiI GCCGGC 1 cut(s) 677
PfeI GAWTC 1 cut(s) 257
PflFI GACNNNGTC 2 cut(s) 902, 988
PkrI GCNGC 7 cut(s) 7, 502, 507, 517, 940, 1015, 1033
PleI GAGTC 2 cut(s) 137, 1054
PpsI GAGTC 2 cut(s) 137, 1054
Psp6I CCWGG 3 cut(s) 187, 754, 1157
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 3 cut(s) 187, 754, 1157
PspN4I GGNNCC 2 cut(s) 252, 1138
PspPI GGNCC 1 cut(s) 703
PspXI VCTCGAGB 1 cut(s) 1062
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 2 cut(s) 262, 1136
PsyI GACNNNGTC 2 cut(s) 902, 988
RsaI GTAC 3 cut(s) 316, 966, 1080
RsaNI GTAC 3 cut(s) 315, 965, 1079
RseI CAYNNNNRTG 2 cut(s) 597, 1159
SalI GTCGAC 1 cut(s) 199
SaqAI TTAA 4 cut(s) 495, 558, 699, 708
SatI GCNGC 7 cut(s) 6, 501, 506, 516, 939, 1014, 1032
Sau3AI GATC 6 cut(s) 262, 307, 691, 758, 971, 1136
Sau96I GGNCC 1 cut(s) 703
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 2 cut(s) 138, 1054
ScrFI CCNGG 3 cut(s) 189, 756, 1159
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 2 cut(s) 601, 943
SfcI CTRYAG 1 cut(s) 373
Sfr274I CTCGAG 1 cut(s) 1062
SlaI CTCGAG 1 cut(s) 1062
SmiMI CAYNNNNRTG 2 cut(s) 597, 1159
SmlI CTYRAG 3 cut(s) 232, 698, 1062
SmoI CTYRAG 3 cut(s) 232, 698, 1062
SphI GCATGC 1 cut(s) 277
Sse9I AATT 8 cut(s) 100, 345, 414, 620, 818, 832, 1041, 1072
SseBI AGGCCT 1 cut(s) 790
SsiI CCGC 3 cut(s) 5, 266, 436
SspMI CTAG 7 cut(s) 51, 270, 323, 441, 539, 968, 1103
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 3 cut(s) 187, 754, 1157
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 3 cut(s) 398, 599, 634
TaqI TCGA 7 cut(s) 200, 224, 306, 732, 1000, 1063, 1099
TasI AATT 8 cut(s) 100, 345, 414, 620, 818, 832, 1041, 1072
TatI WGTACW 2 cut(s) 314, 964
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 4 cut(s) 495, 558, 699, 708
Tru9I TTAA 4 cut(s) 495, 558, 699, 708
TscAI CASTG 3 cut(s) 156, 517, 1042
TseFI GTSAC 3 cut(s) 797, 896, 1057
TseI GCWGC 6 cut(s) 500, 505, 515, 938, 1013, 1031
Tsp45I GTSAC 3 cut(s) 797, 896, 1057
TspDTI ATGAA 2 cut(s) 794, 828
TspGWI ACGGA 1 cut(s) 631
TspRI CASTG 3 cut(s) 156, 517, 1042
Tth111I GACNNNGTC 2 cut(s) 902, 988
Vha464I CTTAAG 1 cut(s) 698
XapI RAATTY 2 cut(s) 818, 832
XceI RCATGY 2 cut(s) 277, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XhoI CTCGAG 1 cut(s) 1062
XmiI GTMKAC 1 cut(s) 200
XspI CTAG 7 cut(s) 51, 270, 323, 441, 539, 968, 1103
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.