Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002485

Physical Location & Seq

Genomic Coordinates Forward (+)

68813677 .. 68815552

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAAGAAACTCCATTGGCAGAGTCTTCATGTGAAGATATTGAACACCCGGGGGATGTGAATGAGAAGGCAGTAGTTCAGTTTGAATGTTTGGACTTCTCTAACTCCAATTTTCTGTCTTCATCTGGCAAATCCATCGGTGATGGGCAAACAATCACAAGAAATGGTTCTCTACAGGATCAAAAGGATTCTAACAAACTGGCAATCTCAGTAGTGTCCAACCAAGAGGAGTTTAATTTAGAAAGCCAACAGTTGGAGAATTCAGATGATCAAGAAAATTGCCATGGACTTACTCAGGAGTCTATTAGGTTGACAAGCGTGAAGCTGGCTGATGAGGAGAACACTGATTTAGAAACCCAACAGCCTAAGACTTCAGGTACTGATGACATTTCTCATGGCCTAGTTCTTATTACCTTGATCAGCTCGAAAGTGGCCAGGAAGGGGAAGATTGATTTAGAAAGCCAACGTCTTGTGAAACTTGGTAATCAAGGTAGTTCCCAGGGCAACAATGCACGACTACCTTTTGGATATCCTTTACCAAAATCACCGTCAGAGTCTTGGCTAAATCGTACCTTGCCTACCATTTCCTCCAGGAATTCATCTTGGCAGTCGTCTCTTGGTTCACGCATTTATACCAGCAGTCTGGTTTCTAAGATATCCTCTCTCGATCCCAAGTGGGAGACGATTGTGGAAACTTGTAATGTGCATCATGGGCGTTTGCGGTTTTCTGAGGAACTTCTTACACCTATACCAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

253

Amino Acids

27.84

Weight (kDa)

4.8

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30990 AT2G30990 AT2G30990 AT2G30990 AT2G30990
fragaria_vesca	FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510
malus_domestica	MD09G1236600.v1.1 MD17G1266300.v1.1 MD17G1266400.v1.1
prunus_persica	Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1
pyrus_communis	pycom09g15510 pycom09g15520 pycom17g26590
rosa_chinensis	RchiOBHm_Chr2g0129801 RchiOBHm_Chr2g0129871 RchiOBHm_Chr7g0242591 RchiOBHm_Chr7g0242601
rosa_laevigata	RLG00000019104 RLG00000031611
rosa_multiflora	Rmu_sc0000650.1_g000026 Rmu_sc0007216.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114300
rosa_rugosa	Rorug02G0289800 Rorug02G0289900 Rorug02G0290000 Rorug02G0290100 Rorug02G0290200
rosa_samantha	Rh2AG340700 Rh2AG341300 Rh2BG349100 Rh2CG328000 Rh2DG367400 Rh3CG154600 Rh3DG155700
rosa_wichuraiana	Rw2G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	2 cut(s)	186, 662
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	259, 595
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	379, 571
AfiI	CCNNNNNNNGG	2 cut(s)	253, 441
AgsI	TTSAA	2 cut(s)	44, 86
AjnI	CCWGG	3 cut(s)	434, 498, 590
AluBI	AGCT	3 cut(s)	325, 423, 758
AluI	AGCT	3 cut(s)	325, 423, 758
Alw26I	GTCTC	2 cut(s)	618, 674
AlwI	GGATC	2 cut(s)	186, 662
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	397, 432
ApoI	RAATTY	2 cut(s)	259, 595
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	50, 51
AsuHPI	GGTGA	2 cut(s)	152, 537
AvaI	CYCGRG	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	434
BbsI	GAAGAC	2 cut(s)	18, 111
BccI	CCATC	2 cut(s)	137, 143
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	3 cut(s)	436, 500, 592
BclI	TGATCA	2 cut(s)	268, 417
BcnI	CCSGG	2 cut(s)	50, 51
BcoDI	GTCTC	2 cut(s)	618, 674
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	173
Bme1390I	CCNGG	5 cut(s)	50, 51, 436, 500, 592
BmeT110I	CYCGRG	1 cut(s)	49
BmrFI	CCNGG	5 cut(s)	50, 51, 436, 500, 592
BmsI	GCATC	1 cut(s)	715
BpiI	GAAGAC	2 cut(s)	18, 111
BpmI	CTGGAG	1 cut(s)	574
BpuMI	CCSGG	2 cut(s)	50, 51
BsaJI	CCNNGG	5 cut(s)	49, 50, 283, 498, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 441
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	436, 500, 592
BseDI	CCNNGG	5 cut(s)	49, 50, 283, 498, 499
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	253, 441
BseMII	CTCAG	3 cut(s)	222, 308, 720
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	242, 350
BshFI	GGCC	2 cut(s)	399, 434
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	253, 441
BsmAI	GTCTC	2 cut(s)	618, 674
BsmBI	CGTCTC	2 cut(s)	618, 674
BsnI	GGCC	2 cut(s)	399, 434
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	178, 268, 417, 667
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	721
BspANI	GGCC	2 cut(s)	399, 434
BspCNI	CTCAG	3 cut(s)	221, 307, 721
BspPI	GGATC	2 cut(s)	186, 662
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	5 cut(s)	49, 50, 283, 498, 499
BssMI	GATC	4 cut(s)	178, 268, 417, 667
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	3 cut(s)	436, 500, 592
Bst4CI	ACNGT	2 cut(s)	252, 549
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	6 cut(s)	208, 294, 366, 651, 729, 759
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	4 cut(s)	181, 271, 420, 670
BstMAI	GTCTC	2 cut(s)	618, 674
BstMBI	GATC	4 cut(s)	178, 268, 417, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	712
BstNI	CCWGG	3 cut(s)	436, 500, 592
BstSCI	CCNGG	5 cut(s)	48, 49, 434, 498, 590
BstSFI	CTRYAG	1 cut(s)	173
BstV2I	GAAGAC	2 cut(s)	18, 111
BstXI	CCANNNNNNTGG	1 cut(s)	643
BsuRI	GGCC	2 cut(s)	399, 434
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr9I	CCCGGG	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	378, 570
CviAII	CATG	4 cut(s)	30, 284, 395, 710
CviQI	GTAC	2 cut(s)	378, 570
DdeI	CTNAG	6 cut(s)	208, 294, 366, 651, 729, 759
DpnI	GATC	4 cut(s)	180, 270, 419, 669
DpnII	GATC	4 cut(s)	178, 268, 417, 667
EaeI	YGGCCR	1 cut(s)	432
Eco130I	CCWWGG	1 cut(s)	283
Eco32I	GATATC	2 cut(s)	530, 657
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	49
EcoRI	GAATTC	2 cut(s)	259, 595
EcoRII	CCWGG	3 cut(s)	434, 498, 590
EcoRV	GATATC	2 cut(s)	530, 657
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
Esp3I	CGTCTC	2 cut(s)	618, 674
FaeI	CATG	4 cut(s)	33, 287, 398, 713
FaiI	YATR	6 cut(s)	31, 285, 396, 633, 711, 749
FatI	CATG	4 cut(s)	29, 283, 394, 709
FbaI	TGATCA	2 cut(s)	268, 417
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	2 cut(s)	399, 434
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	4 cut(s)	33, 287, 398, 713
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	4 cut(s)	23, 188, 299, 554
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	152, 537
Hpy166II	GTNNAC	2 cut(s)	312, 623
Hpy188I	TCNGA	3 cut(s)	265, 553, 730
Hpy188III	TCNNGA	3 cut(s)	272, 296, 665
Hpy8I	GTNNAC	2 cut(s)	312, 623
HpyAV	CCTTC	2 cut(s)	61, 433
HpyCH4III	ACNGT	2 cut(s)	252, 549
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	2 cut(s)	512, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	712
HpyF3I	CTNAG	6 cut(s)	208, 294, 366, 651, 729, 759
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	4 cut(s)	33, 287, 398, 713
Ksp22I	TGATCA	2 cut(s)	268, 417
Kzo9I	GATC	4 cut(s)	178, 268, 417, 667
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	466
MalI	GATC	4 cut(s)	180, 270, 419, 669
MboI	GATC	4 cut(s)	178, 268, 417, 667
MboII	GAAGA	5 cut(s)	17, 18, 47, 111, 457
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	5 cut(s)	109, 235, 259, 277, 595
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	3 cut(s)	32, 308, 563
MmeI	TCCRAC	2 cut(s)	234, 243
MnlI	CCTC	5 cut(s)	220, 328, 598, 670, 724
Mox20I	TGGCCA	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	5 cut(s)	50, 51, 436, 500, 592
MvaI	CCWGG	3 cut(s)	436, 500, 592
MwoI	GCNNNNNNNGC	1 cut(s)	712
NciI	CCSGG	2 cut(s)	50, 51
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	4 cut(s)	178, 268, 417, 667
NlaIII	CATG	4 cut(s)	33, 287, 398, 713
PasI	CCCWGGG	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	590
PleI	GAGTC	3 cut(s)	31, 307, 562
PpsI	GAGTC	3 cut(s)	31, 307, 562
Psp6I	CCWGG	3 cut(s)	434, 498, 590
PspGI	CCWGG	3 cut(s)	434, 498, 590
PstNI	CAGNNNCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	379, 571
RsaNI	GTAC	2 cut(s)	378, 570
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	4 cut(s)	178, 268, 417, 667
SchI	GAGTC	3 cut(s)	32, 308, 563
ScrFI	CCNGG	5 cut(s)	50, 51, 436, 500, 592
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	1 cut(s)	173
SmaI	CCCGGG	1 cut(s)	51
Sse9I	AATT	5 cut(s)	109, 235, 259, 277, 595
SsiI	CCGC	1 cut(s)	721
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	5 cut(s)	48, 49, 434, 498, 590
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	252, 549
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	2 cut(s)	425, 666
TasI	AATT	5 cut(s)	109, 235, 259, 277, 595
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	18, 111, 588
TspMI	CCCGGG	1 cut(s)	49
TspRI	CASTG	1 cut(s)	349
Van91I	CCANNNNNTGG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	259, 595
XmaI	CCCGGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.