Rh2DG367400

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002485
Physical Location & Seq
Forward (+)
52013403 .. 52017724
4322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG367400.1

Sequence Viewer

Length: 936 bp
ATGGAAGAGAAGCAGTTGAATTTTAACCGGCCACTTCTATCTGTGAGACGTTTCTCAGCAAAAACTGTCTCCTCAGAAGCTGATGACAAAAGGAAGACAGCTAAATCACAACCAAAACTACCTCCTCTTCCTGCTTACAAGTCAGAACTGAAATCAGGTCCAGTGAGGAATCCGGGAACTGTTCCTTTTATATGGGAGCAAATTCCAGGAAGACCCAAGGACGAAAGTATACCCAAAAATCAGGATCTTGAAGGGCCTCTGGTTGCACCAAAGCTTCCACCTGGAAGGGTCTCAAAGGTTAAGAAGCAAGGGTTGGATAAAGGTTCTAAAGGTACAACAGCTGCTCAATCCCAAAATGGGAATGTGCTTTCCAGTTCTCAAAATATTTCAGCCTTGGAGAGAAAAGTAGCTACTAAAGATGAAAGGTCTAAAGAGGGAAAGGAGGAGAGGACTAGTTCAGAGGATGGTGATGAGACCTATTTAGATGCACTTGATGCACTTTCTAGAACTGCATCAGCCTATATGAACTGTAGTGTAAGTGGTTTAAGTGGACTGGATGATCCAGATATCATACCCTCGGGAACTTTCTCAACAGATCCACAGACACGGGATTTCATGATGGGTCGGTTCTTGCCTGCAGCAAAAGCAATGGCTTCAGAAACACCTCATAATGCTCCTAGGAAGCAACCAGTGGCTAGAGAGCAACCTATTTCCAAAGAGGAACCAAGAAGGGTGATAAAGGTAGTGACTGGGGATAAGCGGCATCAACTTAATCAATATAGGCCACTTTATGTTCGAGAAATAGCTGGGGACGCAAGTAAGGATGAAGGTGACGATTACTATGGATCTGAAATTTTTTTAGCTAAAGTTTGTGGGTTATTTCCTGGATTTTGCCTTAAAAGTTCCTTTTACTGTTTAATCCTGTTCCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

311

Amino Acids

34.25

Weight (kDa)

9.07

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 1 - 306 1.3e-87 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 229
AciI CCGC 1 cut(s) 760
AclWI GGATC 4 cut(s) 252, 554, 590, 853
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 3 cut(s) 19, 201, 852
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 357, 928
AgsI TTSAA 2 cut(s) 19, 251
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 4 cut(s) 205, 280, 883, 927
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 7 cut(s) 80, 101, 274, 341, 410, 806, 863
AluI AGCT 7 cut(s) 80, 101, 274, 341, 410, 806, 863
Alw26I GTCTC 4 cut(s) 40, 73, 295, 467
AlwI GGATC 4 cut(s) 252, 554, 590, 853
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 577
AoxI GGCC 3 cut(s) 29, 254, 782
ApeKI GCWGC 2 cut(s) 341, 638
ApoI RAATTY 3 cut(s) 19, 201, 852
AspA2I CCTAGG 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 158, 254
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 479, 745, 842
AvaI CYCGRG 1 cut(s) 577
AvaII GGWCC 1 cut(s) 158
AvrII CCTAGG 1 cut(s) 677
BbsI GAAGAC 2 cut(s) 101, 217
BbvI GCAGC 2 cut(s) 328, 650
BccI CCATC 2 cut(s) 458, 613
BciT130I CCWGG 4 cut(s) 207, 282, 885, 929
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 4 cut(s) 40, 73, 295, 467
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 4 cut(s) 453, 504, 678, 696
BfmI CTRYAG 2 cut(s) 529, 636
BisI GCNGC 3 cut(s) 342, 639, 761
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 3 cut(s) 343, 640, 762
Bme1390I CCNGG 5 cut(s) 174, 207, 282, 885, 929
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 577
BmgT120I GGNCC 2 cut(s) 158, 254
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 5 cut(s) 174, 207, 282, 885, 929
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 4 cut(s) 475, 484, 521, 772
BmuI ACTGGG 1 cut(s) 759
BpiI GAAGAC 2 cut(s) 101, 217
BpuMI CCSGG 1 cut(s) 174
BsaI GGTCTC 2 cut(s) 295, 467
BsaJI CCNNGG 5 cut(s) 216, 393, 576, 677, 928
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 928
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 5 cut(s) 161, 372, 558, 689, 754
Bse3DI GCAATG 1 cut(s) 654
BseBI CCWGG 4 cut(s) 207, 282, 885, 929
BseDI CCNNGG 5 cut(s) 216, 393, 576, 677, 928
BseGI GGATG 3 cut(s) 469, 562, 829
BseLI CCNNNNNNNGG 2 cut(s) 357, 928
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 2 cut(s) 69, 87
BseNI ACTGG 5 cut(s) 161, 372, 558, 689, 754
BseRI GAGGAG 3 cut(s) 61, 114, 458
BseXI GCAGC 2 cut(s) 328, 650
BseYI CCCAGC 1 cut(s) 806
BshFI GGCC 3 cut(s) 31, 256, 784
BsiHKCI CYCGRG 1 cut(s) 577
BsiSI CCGG 2 cut(s) 28, 173
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 2 cut(s) 357, 928
BsmAI GTCTC 4 cut(s) 40, 73, 295, 467
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 3 cut(s) 31, 256, 784
Bso31I GGTCTC 2 cut(s) 295, 467
BsoBI CYCGRG 1 cut(s) 577
Bsp143I GATC 4 cut(s) 244, 559, 595, 845
BspACI CCGC 1 cut(s) 760
BspANI GGCC 3 cut(s) 31, 256, 784
BspCNI CTCAG 2 cut(s) 68, 86
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 1 cut(s) 723
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 4 cut(s) 252, 554, 590, 853
BspTNI GGTCTC 2 cut(s) 295, 467
BsrDI GCAATG 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 5 cut(s) 161, 372, 558, 689, 754
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 5 cut(s) 216, 393, 576, 677, 928
BssMI GATC 4 cut(s) 244, 559, 595, 845
BssNAI GTATAC 1 cut(s) 230
BssT1I CCWWGG 3 cut(s) 216, 393, 677
Bst1107I GTATAC 1 cut(s) 230
Bst2UI CCWGG 4 cut(s) 207, 282, 885, 929
Bst4CI ACNGT 4 cut(s) 67, 181, 530, 914
Bst6I CTCTTC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 2 cut(s) 55, 73
BstENI CCTNNNNNAGG 1 cut(s) 926
BstF5I GGATG 3 cut(s) 469, 562, 829
BstKTI GATC 4 cut(s) 247, 562, 598, 848
BstMAI GTCTC 4 cut(s) 40, 73, 295, 467
BstMBI GATC 4 cut(s) 244, 559, 595, 845
BstMWI GCNNNNNNNGC 3 cut(s) 494, 644, 812
BstNI CCWGG 4 cut(s) 207, 282, 885, 929
BstSCI CCNGG 5 cut(s) 172, 205, 280, 883, 927
BstSFI CTRYAG 2 cut(s) 529, 636
BstV1I GCAGC 2 cut(s) 328, 650
BstV2I GAAGAC 2 cut(s) 101, 217
BstX2I RGATCY 3 cut(s) 244, 595, 845
BstYI RGATCY 3 cut(s) 244, 595, 845
BstZ17I GTATAC 1 cut(s) 230
BsuRI GGCC 3 cut(s) 31, 256, 784
BtsCI GGATG 3 cut(s) 469, 562, 829
BtsIMutI CAGTG 2 cut(s) 168, 696
Cac8I GCNNGC 1 cut(s) 636
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 158, 254
CseI GACGC 1 cut(s) 821
Csp6I GTAC 1 cut(s) 333
CviAII CATG 1 cut(s) 616
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 55, 73
DpnI GATC 4 cut(s) 246, 561, 597, 847
DpnII GATC 4 cut(s) 244, 559, 595, 845
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 3 cut(s) 216, 393, 677
Eco31I GGTCTC 2 cut(s) 295, 467
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 577
EcoNI CCTNNNNNAGG 1 cut(s) 926
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 4 cut(s) 205, 280, 883, 927
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 3 cut(s) 216, 393, 677
ErhI CCWWGG 3 cut(s) 216, 393, 677
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 1 cut(s) 619
FaqI GGGAC 1 cut(s) 824
FatI CATG 1 cut(s) 615
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 3 cut(s) 342, 639, 761
FokI GGATG 3 cut(s) 476, 569, 836
Fsp4HI GCNGC 3 cut(s) 342, 639, 761
FspBI CTAG 4 cut(s) 453, 504, 678, 696
GluI GCNGC 3 cut(s) 342, 639, 761
GsaI CCCAGC 1 cut(s) 810
HaeIII GGCC 3 cut(s) 31, 256, 784
HapII CCGG 2 cut(s) 28, 173
HgaI GACGC 1 cut(s) 821
Hin1II CATG 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 1 cut(s) 169
HpaII CCGG 2 cut(s) 28, 173
HphI GGTGA 3 cut(s) 479, 745, 842
Hpy166II GTNNAC 2 cut(s) 230, 551
Hpy188I TCNGA 5 cut(s) 76, 145, 460, 658, 850
Hpy188III TCNNGA 7 cut(s) 242, 248, 504, 563, 579, 616, 797
Hpy8I GTNNAC 2 cut(s) 230, 551
HpyAV CCTTC 4 cut(s) 245, 279, 723, 821
HpyCH4III ACNGT 4 cut(s) 67, 181, 530, 914
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 5 cut(s) 266, 488, 497, 512, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 494, 644, 812
HpyF3I CTNAG 2 cut(s) 55, 73
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 1 cut(s) 619
Kzo9I GATC 4 cut(s) 244, 559, 595, 845
LmnI GCTCC 2 cut(s) 196, 679
Lsp1109I GCAGC 2 cut(s) 328, 650
LweI GCATC 4 cut(s) 475, 484, 521, 772
MaeI CTAG 4 cut(s) 453, 504, 678, 696
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 745, 830
MalI GATC 4 cut(s) 246, 561, 597, 847
MboI GATC 4 cut(s) 244, 559, 595, 845
MboII GAAGA 4 cut(s) 17, 106, 119, 222
MflI RGATCY 3 cut(s) 244, 595, 845
MluCI AATT 3 cut(s) 19, 201, 852
MmeI TCCRAC 1 cut(s) 294
MseI TTAA 6 cut(s) 24, 300, 545, 771, 897, 917
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 28, 173
MspR9I CCNGG 5 cut(s) 174, 207, 282, 885, 929
MvaI CCWGG 4 cut(s) 207, 282, 885, 929
MwoI GCNNNNNNNGC 3 cut(s) 494, 644, 812
NciI CCSGG 1 cut(s) 174
NdeII GATC 4 cut(s) 244, 559, 595, 845
NlaIII CATG 1 cut(s) 619
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 2 cut(s) 745, 830
PagI TCATGA 1 cut(s) 615
PfeI GAWTC 1 cut(s) 169
PfoI TCCNGGA 3 cut(s) 172, 205, 883
PkrI GCNGC 3 cut(s) 343, 640, 762
Psp6I CCWGG 4 cut(s) 205, 280, 883, 927
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 4 cut(s) 205, 280, 883, 927
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 2 cut(s) 158, 254
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 3 cut(s) 244, 595, 845
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
SaqAI TTAA 6 cut(s) 24, 300, 545, 771, 897, 917
SatI GCNGC 3 cut(s) 342, 639, 761
Sau3AI GATC 4 cut(s) 244, 559, 595, 845
Sau96I GGNCC 2 cut(s) 158, 254
ScrFI CCNGG 5 cut(s) 174, 207, 282, 885, 929
SfaNI GCATC 4 cut(s) 475, 484, 521, 772
SfcI CTRYAG 2 cut(s) 529, 636
SinI GGWCC 1 cut(s) 158
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 3 cut(s) 19, 201, 852
SsiI CCGC 1 cut(s) 760
SspI AATATT 1 cut(s) 385
SspMI CTAG 4 cut(s) 453, 504, 678, 696
StyD4I CCNGG 5 cut(s) 172, 205, 280, 883, 927
StyI CCWWGG 3 cut(s) 216, 393, 677
TaaI ACNGT 4 cut(s) 67, 181, 530, 914
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 796
TasI AATT 3 cut(s) 19, 201, 852
TauI GCSGC 1 cut(s) 763
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 6 cut(s) 24, 300, 545, 771, 897, 917
Tru9I TTAA 6 cut(s) 24, 300, 545, 771, 897, 917
TscAI CASTG 2 cut(s) 168, 696
TseFI GTSAC 2 cut(s) 745, 830
TseI GCWGC 2 cut(s) 341, 638
Tsp45I GTSAC 2 cut(s) 745, 830
TspDTI ATGAA 4 cut(s) 435, 539, 604, 840
TspRI CASTG 2 cut(s) 168, 696
VpaK11BI GGWCC 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 926
XapI RAATTY 3 cut(s) 19, 201, 852
XbaI TCTAGA 1 cut(s) 503
XmaJI CCTAGG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 229
XspI CTAG 4 cut(s) 453, 504, 678, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.