FvH4_6g27510

Protein of unknown function (DUF688)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
21152125 .. 21156504
4380 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27510.t5

Sequence Viewer

Length: 1542 bp
ATGGCTTCAGAAACACCTCACAATGCTCCTAGGAAGCACCCTGTGGCTAGAGAGCAACCAATTTCCAGAGAGGAACCAAGAAGGGTTAAAAAGATAATGACTGGGGATAAGCAGCATCAATCTAATCAATATAGGCCAGTTTATATTCAAGATATAGCTCAGGAAGCACGTGAGGATGAAGGGATGAGAATGCCGGTGCAATTACCCATTTATTCGGTTTGTAGAGTGCTCGGTAACTCTTCTTATGCTGGTTCTCACACTGAAGCTGAAAATAAGCATGGTGGGACTGGCGTATATAGAGAAAGATTAATTAGTCGTGATCAAGAAGCTGGGCTGCATGAAGATAACATTGATTTGAAACGTGAATCCGACCAGATCAGTAACAGAAGTGATGGTCTGCCATTAGATGGGTCATCAGTAAACAGGCGTTTGCAGGGTAGTGGCATATCACCCTACCGTAGGGAATGTTCTCAGTCTATCCTTCATGACGGAAAATGTTTTCTAGGTATTCCTGAGAAAGCTAAGCGTTCCAAGGAGACTAGTAGCTCGGATAAATATAGAAAAGGCTGCAGGTTTCTGGAACGTTTGTCTAGTGAGAATGCTGAATGGGAAGCACGCATAGGAAGTCCTGTGGTTGAGAAGACACTGTATGTTGATTCTGTTCAGACAGTAAAATCTTCAAGTTCAAATTCATTTTTCTCAGATATAAAGGGCGAGATAAAGGGACTTATCGATTACAAACGGAATGATTTGGACATTCCTGAAAGAAGTGAAGTGGAAGAAACTCTATTGGCAGATTGTACATTTCAAGATATTGAACACTTGGGGAATGTGAATGAGAAGGCAGCAGTTCAGTCTAAATGTTTGGACTTTTCGAAATCTAGTTCTCTGTCTTCTGCTGGAAAATCATATTGGGATGTGCAAAAAATCACAAGAAATGGCCGTCTACAGGATCAGAAGGATTATAACAAACTGGCAATCTCAGAAGTGGCCAACAAAGAGGAGGTTAATTTTGAAAGCCAACTGTTGGATAATTCAGATGATCCAGAAAATTGCCACGGCCTTACTGAGGAATGTATTAGGTTGACAAGCGTGAAGCTGGCTGATGAGGAGAACACTGATTTAAAAATCCTAGAGCGTAAGACTTCAGATACTGATGACATTTCTCATGGCCTAGTTCAAAATTCTATTACATTGATCCGCTCAAAAGTGGGCAAGAAGGGGAAGATTGATTTAGAAAGCCAACGTCTTGTGACACTTGGTAATCAAGGAAGTTCTGAGGGTGAAAATACACGACTACCTCTTGGACCCCCTTTACCAAAATCACCGTCAGAGTCGTGGCTAAAGCGTACCTTGCCTACCATTTCCTCCAGGAATTCAGCTTCACAGTCTTCTCTTGGTTCACGCATTTATACCAGCAGTCCTGTTTCTAAGATATCCTCTCTTGATCCCAAGTGGGAGACTATTGTCAGAACTTCTAATGTGCATCACGGGCGTTCGCGGTTCTCTGAGGAACTTCTTACACCTATACCAGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

514

Amino Acids

57.42

Weight (kDa)

6.36

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 1 - 273 1.8e-69 Protein of unknown function (DUF688)
DUF688 PF05097 289 - 450 8.7e-13 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
Acc36I ACCTGC 1 cut(s) 561
AccB7I CCANNNNNTGG 2 cut(s) 407, 1027
AccBSI CCGCTC 1 cut(s) 1203
AccI GTMKAC 1 cut(s) 946
AccII CGCG 1 cut(s) 1501
AciI CCGC 2 cut(s) 1201, 1501
AclI AACGTT 1 cut(s) 583
AclWI GGATC 4 cut(s) 960, 1037, 1192, 1442
AcoI YGGCCR 2 cut(s) 940, 990
AcsI RAATTY 3 cut(s) 688, 1183, 1375
AcuI CTGAAG 2 cut(s) 282, 1131
AcvI CACGTG 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 2 cut(s) 802, 1351
AfiI CCNNNNNNNGG 5 cut(s) 407, 459, 949, 1027, 1069
AgsI TTSAA 8 cut(s) 149, 358, 681, 687, 809, 818, 1016, 1181
AhlI ACTAGT 1 cut(s) 539
AjnI CCWGG 1 cut(s) 1370
AjuI GAANNNNNNNTTGG 2 cut(s) 895, 927
AluBI AGCT 8 cut(s) 158, 266, 329, 521, 546, 1099, 1382, 1538
AluI AGCT 8 cut(s) 158, 266, 329, 521, 546, 1099, 1382, 1538
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 530, 1454
AlwI GGATC 4 cut(s) 960, 1037, 1192, 1442
AlwNI CAGNNNCTG 1 cut(s) 1154
AoxI GGCC 5 cut(s) 134, 940, 990, 1060, 1171
ApeKI GCWGC 4 cut(s) 112, 334, 567, 845
ApoI RAATTY 3 cut(s) 688, 1183, 1375
ArsI GACNNNNNNTTYG 2 cut(s) 1313, 1345
AseI ATTAAT 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 1307
AsuHPI GGTGA 3 cut(s) 441, 1295, 1317
AsuII TTCGAA 1 cut(s) 875
AvaII GGWCC 1 cut(s) 1307
AvrII CCTAGG 1 cut(s) 29
BalI TGGCCA 1 cut(s) 992
BbrPI CACGTG 1 cut(s) 170
BbsI GAAGAC 3 cut(s) 647, 885, 1383
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 124, 321, 554, 857
BccI CCATC 2 cut(s) 386, 401
BceAI ACGGC 2 cut(s) 927, 1075
BciT130I CCWGG 1 cut(s) 1372
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 2 cut(s) 530, 1454
BcuI ACTAGT 1 cut(s) 539
BfaI CTAG 8 cut(s) 30, 48, 503, 540, 591, 882, 1133, 1175
BfmI CTRYAG 2 cut(s) 568, 947
BfuAI ACCTGC 1 cut(s) 561
BisI GCNGC 4 cut(s) 113, 335, 568, 846
BlnI CCTAGG 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 4 cut(s) 114, 336, 569, 847
Bme1390I CCNGG 1 cut(s) 1372
Bme18I GGWCC 1 cut(s) 1307
BmgT120I GGNCC 1 cut(s) 1307
BmiI GGNNCC 2 cut(s) 75, 1309
BmrFI CCNGG 1 cut(s) 1372
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 124, 1495
BmuI ACTGGG 1 cut(s) 111
BoxI GACNNNNGTC 1 cut(s) 1466
BpiI GAAGAC 3 cut(s) 647, 885, 1383
BpmI CTGGAG 1 cut(s) 1354
Bpu10I CCTNAGC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 875
Bsa29I ATCGAT 1 cut(s) 732
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 29, 531, 1057
Bsc4I CCNNNNNNNGG 5 cut(s) 407, 459, 949, 1027, 1069
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 4 cut(s) 106, 137, 292, 978
BseBI CCWGG 1 cut(s) 1372
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 29, 531, 1057
BseGI GGATG 3 cut(s) 181, 189, 922
BseLI CCNNNNNNNGG 5 cut(s) 407, 459, 949, 1027, 1069
BseMII CTCAG 8 cut(s) 173, 485, 504, 714, 996, 1059, 1269, 1500
BseNI ACTGG 4 cut(s) 106, 137, 292, 978
BseRI GAGGAG 2 cut(s) 1016, 1124
BseXI GCAGC 4 cut(s) 124, 321, 554, 857
BseYI CCCAGC 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 1501
BshFI GGCC 5 cut(s) 136, 942, 992, 1062, 1173
BshVI ATCGAT 1 cut(s) 732
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 2 cut(s) 298, 738
BslI CCNNNNNNNGG 5 cut(s) 407, 459, 949, 1027, 1069
BsmAI GTCTC 2 cut(s) 530, 1454
BsmFI GGGAC 2 cut(s) 298, 738
BsmI GAATGC 2 cut(s) 195, 604
BsnI GGCC 5 cut(s) 136, 942, 992, 1062, 1173
Bsp119I TTCGAA 1 cut(s) 875
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 800
Bsp143I GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 2 cut(s) 1201, 1501
BspANI GGCC 5 cut(s) 136, 942, 992, 1062, 1173
BspCNI CTCAG 8 cut(s) 172, 484, 505, 713, 995, 1060, 1270, 1501
BspDI ATCGAT 1 cut(s) 732
BspFNI CGCG 1 cut(s) 1501
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 75, 1309
BspMAI CTGCAG 1 cut(s) 572
BspMI ACCTGC 1 cut(s) 561
BspPI GGATC 4 cut(s) 960, 1037, 1192, 1442
BspT104I TTCGAA 1 cut(s) 875
BsrBI CCGCTC 1 cut(s) 1203
BsrFI RCCGGY 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 800
BsrI ACTGG 4 cut(s) 106, 137, 292, 978
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 29, 531, 1057
BssMI GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
BssT1I CCWWGG 2 cut(s) 29, 531
Bst2UI CCWGG 1 cut(s) 1372
Bst4CI ACNGT 6 cut(s) 458, 648, 670, 1026, 1329, 1389
Bst6I CTCTTC 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 800
BstBAI YACGTR 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 875
BstC8I GCNNGC 2 cut(s) 616, 1101
BstDSI CCRYGG 1 cut(s) 1057
BstENI CCTNNNNNAGG 2 cut(s) 457, 1067
BstF5I GGATG 3 cut(s) 181, 189, 922
BstFNI CGCG 1 cut(s) 1501
BstKTI GATC 6 cut(s) 322, 378, 955, 1045, 1200, 1450
BstMAI GTCTC 2 cut(s) 530, 1454
BstMBI GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
BstMWI GCNNNNNNNGC 3 cut(s) 164, 1354, 1492
BstNI CCWGG 1 cut(s) 1372
BstPAI GACNNNNGTC 1 cut(s) 1466
BstSCI CCNGG 1 cut(s) 1370
BstSFI CTRYAG 2 cut(s) 568, 947
BstUI CGCG 1 cut(s) 1501
BstV1I GCAGC 4 cut(s) 124, 321, 554, 857
BstV2I GAAGAC 3 cut(s) 647, 885, 1383
Bsu15I ATCGAT 1 cut(s) 732
BsuRI GGCC 5 cut(s) 136, 942, 992, 1062, 1173
BsuTUI ATCGAT 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 1057
BtsCI GGATG 3 cut(s) 181, 189, 922
BtsIMutI CAGTG 3 cut(s) 258, 644, 1116
BveI ACCTGC 1 cut(s) 561
Cac8I GCNNGC 2 cut(s) 616, 1101
CaiI CAGNNNCTG 1 cut(s) 1154
CciI TCATGA 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 1307
ClaI ATCGAT 1 cut(s) 732
Csp6I GTAC 2 cut(s) 801, 1350
CviAII CATG 4 cut(s) 278, 338, 485, 1169
CviQI GTAC 2 cut(s) 801, 1350
DpnI GATC 6 cut(s) 321, 377, 954, 1044, 1199, 1449
DpnII GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
DraI TTTAAA 1 cut(s) 1125
DraIII CACNNNGTG 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 940, 990
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 29, 531
Eco32I GATATC 1 cut(s) 1437
Eco47I GGWCC 1 cut(s) 1307
Eco57I CTGAAG 2 cut(s) 282, 1131
Eco72I CACGTG 1 cut(s) 170
EcoNI CCTNNNNNAGG 2 cut(s) 457, 1067
EcoRI GAATTC 1 cut(s) 1375
EcoRII CCWGG 1 cut(s) 1370
EcoRV GATATC 1 cut(s) 1437
EcoT14I CCWWGG 2 cut(s) 29, 531
ErhI CCWWGG 2 cut(s) 29, 531
FaeI CATG 4 cut(s) 281, 341, 488, 1172
FalI AAGNNNNNCTT 2 cut(s) 1337, 1369
FaqI GGGAC 2 cut(s) 298, 738
FatI CATG 4 cut(s) 277, 337, 484, 1168
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 946
Fnu4HI GCNGC 4 cut(s) 113, 335, 568, 846
FokI GGATG 3 cut(s) 188, 196, 929
Fsp4HI GCNGC 4 cut(s) 113, 335, 568, 846
FspBI CTAG 8 cut(s) 30, 48, 503, 540, 591, 882, 1133, 1175
GluI GCNGC 4 cut(s) 113, 335, 568, 846
GsaI CCCAGC 1 cut(s) 333
GsuI CTGGAG 1 cut(s) 1354
HaeIII GGCC 5 cut(s) 136, 942, 992, 1062, 1173
HapII CCGG 1 cut(s) 194
Hin1II CATG 4 cut(s) 281, 341, 488, 1172
HincII GTYRAC 1 cut(s) 1086
HindII GTYRAC 1 cut(s) 1086
HindIII AAGCTT 1 cut(s) 1536
HinfI GANTC 3 cut(s) 365, 656, 1334
HpaII CCGG 1 cut(s) 194
HphI GGTGA 3 cut(s) 441, 1295, 1317
Hpy166II GTNNAC 4 cut(s) 421, 947, 1086, 1403
Hpy8I GTNNAC 4 cut(s) 421, 947, 1086, 1403
HpyAV CCTTC 6 cut(s) 75, 173, 491, 835, 952, 1213
HpyCH4III ACNGT 6 cut(s) 458, 648, 670, 1026, 1329, 1389
HpyCH4IV ACGT 4 cut(s) 169, 361, 583, 1246
HpyCH4V TGCA 6 cut(s) 199, 337, 433, 570, 922, 1486
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 1354, 1492
HpySE526I ACGT 4 cut(s) 169, 361, 583, 1246
Hsp92II CATG 4 cut(s) 281, 341, 488, 1172
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 4 cut(s) 124, 321, 554, 857
LweI GCATC 2 cut(s) 124, 1495
MaeI CTAG 8 cut(s) 30, 48, 503, 540, 591, 882, 1133, 1175
MaeII ACGT 4 cut(s) 169, 361, 583, 1246
MaeIII GTNAC 3 cut(s) 233, 380, 1252
MalI GATC 6 cut(s) 321, 377, 954, 1044, 1199, 1449
MbiI CCGCTC 1 cut(s) 1203
MboI GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
MboII GAAGA 8 cut(s) 231, 353, 652, 669, 791, 885, 1237, 1383
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 992
MluCI AATT 9 cut(s) 60, 200, 309, 688, 1009, 1033, 1051, 1183, 1375
MluNI TGGCCA 1 cut(s) 992
MlyI GAGTC 1 cut(s) 1343
MmeI TCCRAC 2 cut(s) 393, 1008
Mox20I TGGCCA 1 cut(s) 992
MscI TGGCCA 1 cut(s) 992
MseI TTAA 4 cut(s) 87, 308, 1008, 1124
Msp20I TGGCCA 1 cut(s) 992
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 1372
Mva1269I GAATGC 2 cut(s) 195, 604
MvaI CCWGG 1 cut(s) 1372
MvnI CGCG 1 cut(s) 1501
MwoI GCNNNNNNNGC 3 cut(s) 164, 1354, 1492
NdeII GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
NlaIII CATG 4 cut(s) 281, 341, 488, 1172
NlaIV GGNNCC 2 cut(s) 75, 1309
NmuCI GTSAC 1 cut(s) 1252
NspV TTCGAA 1 cut(s) 875
PagI TCATGA 1 cut(s) 484
PctI GAATGC 2 cut(s) 195, 604
PfeI GAWTC 2 cut(s) 365, 656
PflMI CCANNNNNTGG 2 cut(s) 407, 1027
PfoI TCCNGGA 1 cut(s) 1370
PkrI GCNGC 4 cut(s) 114, 336, 569, 847
PleI GAGTC 1 cut(s) 1342
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 1 cut(s) 1342
Ppu21I YACGTR 1 cut(s) 170
PshAI GACNNNNGTC 1 cut(s) 1466
PshBI ATTAAT 1 cut(s) 308
PsiI TTATAA 1 cut(s) 966
Psp1406I AACGTT 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 1370
PspCI CACGTG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 1370
PspN4I GGNNCC 2 cut(s) 75, 1309
PspPI GGNCC 1 cut(s) 1307
PsrI GAACNNNNNNTAC 2 cut(s) 451, 483
PstI CTGCAG 1 cut(s) 572
PstNI CAGNNNCTG 1 cut(s) 1154
RsaI GTAC 2 cut(s) 802, 1351
RsaNI GTAC 2 cut(s) 801, 1350
SaqAI TTAA 4 cut(s) 87, 308, 1008, 1124
SatI GCNGC 4 cut(s) 113, 335, 568, 846
Sau3AI GATC 6 cut(s) 319, 375, 952, 1042, 1197, 1447
Sau96I GGNCC 1 cut(s) 1307
SchI GAGTC 1 cut(s) 1343
ScrFI CCNGG 1 cut(s) 1372
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 124, 1495
SfcI CTRYAG 2 cut(s) 568, 947
SfuI TTCGAA 1 cut(s) 875
SinI GGWCC 1 cut(s) 1307
SpeI ACTAGT 1 cut(s) 539
Sse9I AATT 9 cut(s) 60, 200, 309, 688, 1009, 1033, 1051, 1183, 1375
SsiI CCGC 2 cut(s) 1201, 1501
SspMI CTAG 8 cut(s) 30, 48, 503, 540, 591, 882, 1133, 1175
StyD4I CCNGG 1 cut(s) 1370
StyI CCWWGG 2 cut(s) 29, 531
TaaI ACNGT 6 cut(s) 458, 648, 670, 1026, 1329, 1389
TaiI ACGT 4 cut(s) 172, 364, 586, 1249
TaqI TCGA 2 cut(s) 732, 875
TasI AATT 9 cut(s) 60, 200, 309, 688, 1009, 1033, 1051, 1183, 1375
TatI WGTACW 1 cut(s) 800
TfiI GAWTC 2 cut(s) 365, 656
Tru1I TTAA 4 cut(s) 87, 308, 1008, 1124
Tru9I TTAA 4 cut(s) 87, 308, 1008, 1124
TscAI CASTG 3 cut(s) 265, 651, 1123
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 4 cut(s) 112, 334, 567, 845
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 4 cut(s) 192, 354, 473, 681
TspGWI ACGGA 2 cut(s) 504, 757
TspRI CASTG 3 cut(s) 265, 651, 1123
Van91I CCANNNNNTGG 2 cut(s) 407, 1027
VpaK11BI GGWCC 1 cut(s) 1307
VspI ATTAAT 1 cut(s) 308
XagI CCTNNNNNAGG 2 cut(s) 457, 1067
XapI RAATTY 3 cut(s) 688, 1183, 1375
XmaJI CCTAGG 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 946
XspI CTAG 8 cut(s) 30, 48, 503, 540, 591, 882, 1133, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.