RchiOBHm_Chr7g0242591

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002485
Physical Location & Seq
Forward (+)
68810487 .. 68813675
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21741

Sequence Viewer

Length: 636 bp
ATGACAAAAGGAAGACAGCTAAATCACAACCGAAACTACCTCCTCTTGTTGTCAGAACTGAAATCAGGTCCAGTGAGGAATCTGGGAACTGTGCCTTTTATATGGGAGCAAATTCCAGGAAGACCCAAGGACGAAAGTATACCCAAAAATCAGGATCTTGAAGGGCCTCTGGTTGCACCAAAGCTTCCACCTCGAAGGGTCTCAAAGTTTAAGAAGCAAGGGTTGGATAAAGGTGCTAAAGGTACAACAGCTGCTCAATCCCAAACTGGGAATGAGCTTTCCAGTGCTCAAACTATTTCAGCCTTGGAGAGAAAAGTAGCTACTAAGGATGAAAGATCTAAAGAGGGGAAGGAGGAGAGGACTAGTTCAGAGGATGGTGATGAGACCTATTTAGATGCACTTGATGCATTTTCTAGAACTGAATCAGCCTATATGAACCGTAGTGTAAGTGGACTGGATGGTCCAGATATCATACCCTCTGGAACTTTCTCAACAGATCCACAGATACGGGATTTCATGATGGGTCGGTTCTTGCCTGCAGCAAAAGCAATGGCTTCAGAAACACCTCATAATGCTCCTAGGAAGCAACAAGTGGCTAGAGAGCAACCAATTCCAGAGAGGAACCAAGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

211

Amino Acids

23.3

Weight (kDa)

9.07

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 18 - 202 2.5e-45 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 459
AccI GTMKAC 1 cut(s) 139
AclWI GGATC 2 cut(s) 162, 491
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 1 cut(s) 161
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 5 cut(s) 19, 184, 251, 277, 320
AluI AGCT 5 cut(s) 19, 184, 251, 277, 320
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 2 cut(s) 205, 377
AlwI GGATC 2 cut(s) 162, 491
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 251, 539
ApoI RAATTY 1 cut(s) 111
AspA2I CCTAGG 1 cut(s) 578
AspS9I GGNCC 3 cut(s) 68, 164, 461
AsuHPI GGTGA 1 cut(s) 389
AvaII GGWCC 2 cut(s) 68, 461
AvrII CCTAGG 1 cut(s) 578
BbsI GAAGAC 2 cut(s) 19, 127
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 238, 551
BccI CCATC 3 cut(s) 368, 452, 514
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 205, 377
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 4 cut(s) 363, 414, 579, 597
BfmI CTRYAG 1 cut(s) 537
BglII AGATCT 1 cut(s) 335
BisI GCNGC 2 cut(s) 252, 540
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 2 cut(s) 253, 541
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 68, 461
BmgT120I GGNCC 3 cut(s) 68, 164, 461
BmiI GGNNCC 1 cut(s) 623
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 385, 394
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 2 cut(s) 19, 127
BsaI GGTCTC 2 cut(s) 205, 377
BsaJI CCNNGG 3 cut(s) 126, 303, 578
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 4 cut(s) 71, 271, 282, 459
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 126, 303, 578
BseGI GGATG 3 cut(s) 334, 379, 463
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 555
BseNI ACTGG 4 cut(s) 71, 271, 282, 459
BseRI GAGGAG 2 cut(s) 32, 368
BseXI GCAGC 2 cut(s) 238, 551
BshFI GGCC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 205, 377
BsnI GGCC 1 cut(s) 166
Bso31I GGTCTC 2 cut(s) 205, 377
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 3 cut(s) 154, 335, 496
BspANI GGCC 1 cut(s) 166
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 623
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 2 cut(s) 162, 491
BspTNI GGTCTC 2 cut(s) 205, 377
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 4 cut(s) 71, 271, 282, 459
BssECI CCNNGG 3 cut(s) 126, 303, 578
BssMI GATC 3 cut(s) 154, 335, 496
BssNAI GTATAC 1 cut(s) 140
BssT1I CCWWGG 3 cut(s) 126, 303, 578
Bst1107I GTATAC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 91, 440
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 334, 379, 463
BstKTI GATC 3 cut(s) 157, 338, 499
BstMAI GTCTC 2 cut(s) 205, 377
BstMBI GATC 3 cut(s) 154, 335, 496
BstMWI GCNNNNNNNGC 2 cut(s) 404, 545
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 238, 551
BstV2I GAAGAC 2 cut(s) 19, 127
BstX2I RGATCY 3 cut(s) 154, 335, 496
BstYI RGATCY 3 cut(s) 154, 335, 496
BstZ17I GTATAC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 3 cut(s) 334, 379, 463
BtsIMutI CAGTG 2 cut(s) 78, 289
Cac8I GCNNGC 1 cut(s) 537
CciI TCATGA 1 cut(s) 516
Cfr13I GGNCC 3 cut(s) 68, 164, 461
Csp6I GTAC 1 cut(s) 243
CviAII CATG 1 cut(s) 517
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 324
DpnI GATC 3 cut(s) 156, 337, 498
DpnII GATC 3 cut(s) 154, 335, 496
DrdI GACNNNNNNGTC 1 cut(s) 459
DseDI GACNNNNNNGTC 1 cut(s) 459
Eco130I CCWWGG 3 cut(s) 126, 303, 578
Eco31I GGTCTC 2 cut(s) 205, 377
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 68, 461
Eco57I CTGAAG 1 cut(s) 540
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 469
EcoT14I CCWWGG 3 cut(s) 126, 303, 578
EcoT22I ATGCAT 1 cut(s) 409
ErhI CCWWGG 3 cut(s) 126, 303, 578
FaeI CATG 1 cut(s) 520
FaiI YATR 8 cut(s) 101, 103, 140, 432, 434, 473, 518, 570
FatI CATG 1 cut(s) 516
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 252, 540
FokI GGATG 3 cut(s) 341, 386, 470
Fsp4HI GCNGC 2 cut(s) 252, 540
FspBI CTAG 4 cut(s) 363, 414, 579, 597
GluI GCNGC 2 cut(s) 252, 540
HaeIII GGCC 1 cut(s) 166
Hin1II CATG 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 79, 422
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 140, 452
Hpy188I TCNGA 3 cut(s) 55, 370, 559
Hpy188III TCNNGA 7 cut(s) 152, 158, 414, 464, 480, 517, 614
Hpy8I GTNNAC 2 cut(s) 140, 452
HpyAV CCTTC 4 cut(s) 155, 189, 343, 623
HpyCH4III ACNGT 2 cut(s) 91, 440
HpyCH4V TGCA 4 cut(s) 176, 398, 407, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 545
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 1 cut(s) 520
Kzo9I GATC 3 cut(s) 154, 335, 496
LmnI GCTCC 2 cut(s) 106, 580
Lsp1109I GCAGC 2 cut(s) 238, 551
LweI GCATC 2 cut(s) 385, 394
MaeI CTAG 4 cut(s) 363, 414, 579, 597
MalI GATC 3 cut(s) 156, 337, 498
MboI GATC 3 cut(s) 154, 335, 496
MboII GAAGA 2 cut(s) 24, 132
MflI RGATCY 3 cut(s) 154, 335, 496
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 2 cut(s) 111, 609
MmeI TCCRAC 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 404, 545
NdeII GATC 3 cut(s) 154, 335, 496
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 1 cut(s) 623
NsiI ATGCAT 1 cut(s) 409
PagI TCATGA 1 cut(s) 516
PfeI GAWTC 2 cut(s) 79, 422
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 2 cut(s) 253, 541
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 623
PspPI GGNCC 3 cut(s) 68, 164, 461
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 3 cut(s) 154, 335, 496
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 252, 540
Sau3AI GATC 3 cut(s) 154, 335, 496
Sau96I GGNCC 3 cut(s) 68, 164, 461
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 289
SfaNI GCATC 2 cut(s) 385, 394
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 2 cut(s) 68, 461
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 2 cut(s) 111, 609
SspMI CTAG 4 cut(s) 363, 414, 579, 597
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 3 cut(s) 126, 303, 578
TaaI ACNGT 2 cut(s) 91, 440
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 111, 609
TfiI GAWTC 2 cut(s) 79, 422
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 78, 289
TseI GCWGC 2 cut(s) 251, 539
TspDTI ATGAA 3 cut(s) 345, 449, 505
TspRI CASTG 2 cut(s) 78, 289
VpaK11BI GGWCC 2 cut(s) 68, 461
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 413
XmaJI CCTAGG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 4 cut(s) 363, 414, 579, 597
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.