Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002485

Physical Location & Seq

Genomic Coordinates Reverse (-)

13385980 .. 13386666

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAAGAAGCTCCATTGGCAAAGTCTTCATTTCAAGATATTGAACACTCGGGGAATGTGAATGAGAAGGTAGTACTTCAGTCTAAATGTTTGGACTTTTCTAACTCCAGTTTTCTGTCTTCTTCTAGCAAATCAACCAGTGATATGCAAACAATCACAAGAAATGGTTCTCTACATTATCAAAAGGATTCTAACAAACTGGCAATCTCAAAAGTGGCCAACCAAGAGGAGTTTCATTCAGAAAGCCAACAGTTGGAGAATTCATATGATCAAGAAAATTGCCACAGCCTTACTCAGGAACGTATTAGGTTGACAAGCGTGAAGTTGGCTGATGAGGAGAACACTGATGTAGAAGCCCAACAGCTTAAGACTTCAGGTACTGATGACATTTCTCATGGTCTAGTTCAAAATTCTATTACCTTGATCAGCTCGAAAGTGGCCAGGAGCGAGAAGATTGATTTAGAAAGTCAAACGCCCCCTTCATTTCTTATAAGTAAACCAGCAACATCCGCATTCACCTTTCCAGCTCCATCATCTTCAATTGCTCAGACATGTGGTGCTTTCGGACAAACATCTACTTCATTGTGGCCATTCTCTTCTACTATGAACATCTCTCTAATGAATTGCAGGCCTGTTTGTCAACCTATGCAGTTATGGCCATCACTTCCTCTTATTCCTCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

228

Amino Acids

24.98

Weight (kDa)

5.36

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30990 AT2G30990 AT2G30990 AT2G30990 AT2G30990
fragaria_vesca	FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510
malus_domestica	MD09G1236600.v1.1 MD17G1266300.v1.1 MD17G1266400.v1.1
prunus_persica	Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1
pyrus_communis	pycom09g15510 pycom09g15520 pycom17g26590
rosa_chinensis	RchiOBHm_Chr2g0129801 RchiOBHm_Chr2g0129871 RchiOBHm_Chr7g0242591 RchiOBHm_Chr7g0242601
rosa_laevigata	RLG00000019104 RLG00000031611
rosa_multiflora	Rmu_sc0000650.1_g000026 Rmu_sc0007216.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114300
rosa_rugosa	Rorug02G0289800 Rorug02G0289900 Rorug02G0290000 Rorug02G0290100 Rorug02G0290200
rosa_samantha	Rh2AG340700 Rh2AG341300 Rh2BG349100 Rh2CG328000 Rh2DG367400 Rh3CG154600 Rh3DG155700
rosa_wichuraiana	Rw2G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	1 cut(s)	510
AcoI	YGGCCR	4 cut(s)	216, 438, 587, 656
AcsI	RAATTY	2 cut(s)	259, 409
AcuI	CTGAAG	2 cut(s)	62, 357
AfaI	GTAC	2 cut(s)	75, 379
AfiI	CCNNNNNNNGG	2 cut(s)	253, 295
AflII	CTTAAG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	35, 44, 407, 540
AjnI	CCWGG	2 cut(s)	440, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	4 cut(s)	11, 364, 429, 527
AluI	AGCT	4 cut(s)	11, 364, 429, 527
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	5 cut(s)	216, 438, 587, 629, 656
ApoI	RAATTY	2 cut(s)	259, 409
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	49
BalI	TGGCCA	4 cut(s)	218, 440, 589, 658
BbsI	GAAGAC	2 cut(s)	18, 111
BccI	CCATC	2 cut(s)	538, 667
BciT130I	CCWGG	2 cut(s)	442, 681
BclI	TGATCA	2 cut(s)	268, 423
BfaI	CTAG	2 cut(s)	126, 401
BfrI	CTTAAG	1 cut(s)	365
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	442, 681
BmeT110I	CYCGRG	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	442, 681
BpiI	GAAGAC	2 cut(s)	18, 111
BpmI	CTGGAG	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 295
Bse1I	ACTGG	3 cut(s)	108, 138, 204
BseBI	CCWGG	2 cut(s)	442, 681
BseGI	GGATG	1 cut(s)	506
BseLI	CCNNNNNNNGG	2 cut(s)	253, 295
BseMII	CTCAG	2 cut(s)	308, 560
BseNI	ACTGG	3 cut(s)	108, 138, 204
BseRI	GAGGAG	2 cut(s)	242, 350
BshFI	GGCC	5 cut(s)	218, 440, 589, 631, 658
BsiHKCI	CYCGRG	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	253, 295
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	5 cut(s)	218, 440, 589, 631, 658
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	268, 423
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	5 cut(s)	218, 440, 589, 631, 658
BspCNI	CTCAG	2 cut(s)	307, 559
BspTI	CTTAAG	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	108, 138, 204
BssMI	GATC	2 cut(s)	268, 423
Bst2UI	CCWGG	2 cut(s)	442, 681
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	601
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	294, 546
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	506
BstKTI	GATC	2 cut(s)	271, 426
BstMBI	GATC	2 cut(s)	268, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 509, 655
BstNI	CCWGG	2 cut(s)	442, 681
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	2 cut(s)	440, 679
BstV2I	GAAGAC	2 cut(s)	18, 111
BsuRI	GGCC	5 cut(s)	218, 440, 589, 631, 658
BtsCI	GGATG	1 cut(s)	506
BtsIMutI	CAGTG	2 cut(s)	145, 342
Cac8I	GCNNGC	1 cut(s)	629
CaiI	CAGNNNCTG	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	74, 378
CviAII	CATG	2 cut(s)	395, 552
CviQI	GTAC	2 cut(s)	74, 378
DdeI	CTNAG	2 cut(s)	294, 546
DpnI	GATC	2 cut(s)	270, 425
DpnII	GATC	2 cut(s)	268, 423
EaeI	YGGCCR	4 cut(s)	216, 438, 587, 656
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	62, 357
Eco88I	CYCGRG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	440, 679
FaeI	CATG	2 cut(s)	398, 555
FaiI	YATR	9 cut(s)	146, 265, 267, 396, 491, 553, 605, 647, 655
FatI	CATG	2 cut(s)	394, 551
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	2 cut(s)	268, 423
FokI	GGATG	1 cut(s)	493
FspBI	CTAG	2 cut(s)	126, 401
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	5 cut(s)	218, 440, 589, 631, 658
Hin1II	CATG	2 cut(s)	398, 555
HincII	GTYRAC	2 cut(s)	312, 641
HindII	GTYRAC	2 cut(s)	312, 641
HinfI	GANTC	1 cut(s)	188
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	3 cut(s)	312, 497, 641
Hpy188I	TCNGA	3 cut(s)	241, 549, 566
Hpy188III	TCNNGA	3 cut(s)	35, 272, 296
Hpy8I	GTNNAC	3 cut(s)	312, 497, 641
HpyAV	CCTTC	2 cut(s)	61, 489
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	148, 627, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 509, 655
HpyF3I	CTNAG	2 cut(s)	294, 546
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	398, 555
Ksp22I	TGATCA	2 cut(s)	268, 423
Kzo9I	GATC	2 cut(s)	268, 423
LmnI	GCTCC	3 cut(s)	16, 444, 532
MaeI	CTAG	2 cut(s)	126, 401
MaeII	ACGT	1 cut(s)	301
MalI	GATC	2 cut(s)	270, 425
MboI	GATC	2 cut(s)	268, 423
MboII	GAAGA	6 cut(s)	18, 111, 114, 463, 528, 588
MfeI	CAATTG	1 cut(s)	540
MlsI	TGGCCA	4 cut(s)	218, 440, 589, 658
MluCI	AATT	5 cut(s)	259, 277, 409, 540, 622
MluNI	TGGCCA	4 cut(s)	218, 440, 589, 658
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	220, 328, 678, 687
Mox20I	TGGCCA	4 cut(s)	218, 440, 589, 658
MroXI	GAANNNNTTC	1 cut(s)	166
MscI	TGGCCA	4 cut(s)	218, 440, 589, 658
MseI	TTAA	1 cut(s)	366
Msp20I	TGGCCA	4 cut(s)	218, 440, 589, 658
MspCI	CTTAAG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	442, 681
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	442, 681
MwoI	GCNNNNNNNGC	3 cut(s)	17, 509, 655
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	2 cut(s)	268, 423
NlaIII	CATG	2 cut(s)	398, 555
NspI	RCATGY	1 cut(s)	555
PceI	AGGCCT	1 cut(s)	631
PciI	ACATGT	1 cut(s)	551
PctI	GAATGC	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	253
PscI	ACATGT	1 cut(s)	551
PsiI	TTATAA	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	440, 679
PspGI	CCWGG	2 cut(s)	440, 679
PstNI	CAGNNNCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	75, 379
RsaNI	GTAC	2 cut(s)	74, 378
SaqAI	TTAA	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	268, 423
ScaI	AGTACT	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	442, 681
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	259, 277, 409, 540, 622
SseBI	AGGCCT	1 cut(s)	631
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	2 cut(s)	126, 401
StuI	AGGCCT	1 cut(s)	631
StyD4I	CCNGG	2 cut(s)	440, 679
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	431
TasI	AATT	5 cut(s)	259, 277, 409, 540, 622
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	2 cut(s)	145, 349
TspDTI	ATGAA	8 cut(s)	17, 18, 224, 252, 471, 570, 620, 635
TspRI	CASTG	2 cut(s)	145, 349
Van91I	CCANNNNNTGG	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	2 cut(s)	259, 409
XceI	RCATGY	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	2 cut(s)	126, 401
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.