Rh2AG341300

Protein of unknown function (DUF688)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002485
Physical Location & Seq
Forward (+)
49875919 .. 49879106
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG341300.1

Sequence Viewer

Length: 690 bp
ATGGGGAATAACCATGAGTATGATATGGCAGTTAAAGTTGAAAAGCATACCGGGAGTGGTGTATATAAACAAAGATTAATTAGTGGTGATCAAGAAGCTGGGCTGCATGAAGATAACATTGATTTGAAACGTGAATCCAACCAGATCAGTAACAGAAGTGATGGTCTGACAATAGATGGGTCATCAGTAAACAGGTGTCTGCAGGGTAGTGGCATATCACCCTACCGTAGGGAATGTTCTCAGTCTATCCTTCATGATGGAAAATGTTTTCTTGGTATTCCTGAGAAAGTTAAGAGTTCCAAGGAGACTAATAGCTCGGATAAATATAGAAAAGGCCGCAGGTTTCTGGAAATATTGGCTAGTGAGAATGCTGAATGGGAAGCGGGCTTAGGAAGTCCTGTGGTTGAGAAGACACTGTATGTTGATTCTGTACAGACAGTAAAATGTTCAAATTCATTTTCCTCAGATATAAAGGGCGAGATAAAGGGACTTATTGATTACAGACGGAATGATTTGGACATTCCTGAAGGAAGTGGTGAAATGGAAGAAACTCCATTGGCAGAGTCTTCATGTGAAGACATTGAACACTTGGGGGATGTGAATGAGAAGGCAGTAGTTCAGTTTAAATGTTTGGACTTTTCTAACTCCAATTTTCTGTCTTCTTCTGGCAAATCCACCGGTGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

229

Amino Acids

25.21

Weight (kDa)

5.01

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 13 - 156 1e-15 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AciI CCGC 2 cut(s) 337, 383
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 228
AgeI ACCGGT 1 cut(s) 677
AgsI TTSAA 4 cut(s) 41, 127, 450, 584
AluBI AGCT 2 cut(s) 98, 315
AluI AGCT 2 cut(s) 98, 315
Alw26I GTCTC 1 cut(s) 299
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 451
AseI ATTAAT 1 cut(s) 77
AsiGI ACCGGT 1 cut(s) 677
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 98, 210, 548
BbsI GAAGAC 4 cut(s) 416, 558, 582, 651
BbvI GCAGC 1 cut(s) 90
BccI CCATC 3 cut(s) 155, 170, 251
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 2 cut(s) 104, 337
BlsI GCNGC 2 cut(s) 105, 338
Bme1390I CCNGG 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 52
BpiI GAAGAC 4 cut(s) 416, 558, 582, 651
Bpu10I CCTNAGC 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 677
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 3 cut(s) 254, 273, 477
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 98
BshFI GGCC 1 cut(s) 336
BshTI ACCGGT 1 cut(s) 677
BsiSI CCGG 2 cut(s) 51, 678
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 501
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 336
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 88, 144
BspACI CCGC 2 cut(s) 337, 383
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 3 cut(s) 253, 274, 476
BspHI TCATGA 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 677
BsrGI TGTACA 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 88, 144
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 227, 417, 439
BstAUI TGTACA 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 4 cut(s) 240, 282, 388, 463
BstENI CCTNNNNNAGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 2 cut(s) 91, 147
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 88, 144
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 4 cut(s) 416, 558, 582, 651
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 413
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 385
CciI TCATGA 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 677
Csp6I GTAC 1 cut(s) 431
CspAI ACCGGT 1 cut(s) 677
CviAII CATG 4 cut(s) 14, 107, 254, 570
CviJI RGCY 6 cut(s) 98, 103, 315, 336, 359, 387
CviKI_1 RGCY 6 cut(s) 98, 103, 315, 336, 359, 387
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 4 cut(s) 240, 282, 388, 463
DpnI GATC 2 cut(s) 90, 146
DpnII GATC 2 cut(s) 88, 144
DraI TTTAAA 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 546
EcoNI CCTNNNNNAGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 17, 110, 257, 573
FaqI GGGAC 1 cut(s) 501
FatI CATG 4 cut(s) 13, 106, 253, 569
FauI CCCGC 1 cut(s) 376
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 104, 337
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 2 cut(s) 104, 337
FspBI CTAG 1 cut(s) 360
GluI GCNGC 2 cut(s) 104, 337
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 336
HapII CCGG 2 cut(s) 51, 678
Hin1II CATG 4 cut(s) 17, 110, 257, 573
HinfI GANTC 3 cut(s) 134, 425, 563
HpaII CCGG 2 cut(s) 51, 678
HphI GGTGA 3 cut(s) 98, 210, 548
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 168, 319, 466
Hpy188III TCNNGA 5 cut(s) 92, 254, 281, 347, 524
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 260, 521, 601
HpyCH4III ACNGT 3 cut(s) 227, 417, 439
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 106, 202
HpyF3I CTNAG 4 cut(s) 240, 282, 388, 463
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 4 cut(s) 17, 110, 257, 573
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 88, 144
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 90, 146
MboI GATC 2 cut(s) 88, 144
MboII GAAGA 7 cut(s) 122, 421, 557, 558, 587, 651, 654
MluCI AATT 3 cut(s) 78, 451, 649
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 1 cut(s) 472
MseI TTAA 4 cut(s) 33, 77, 291, 624
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 2 cut(s) 51, 678
MspR9I CCNGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 373
NciI CCSGG 1 cut(s) 52
NdeII GATC 2 cut(s) 88, 144
NlaIII CATG 4 cut(s) 17, 110, 257, 573
PagI TCATGA 1 cut(s) 253
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 134, 425
PinAI ACCGGT 1 cut(s) 677
PkrI GCNGC 2 cut(s) 105, 338
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PshBI ATTAAT 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 98
PsrI GAACNNNNNNTAC 2 cut(s) 220, 252
PstI CTGCAG 1 cut(s) 204
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 4 cut(s) 33, 77, 291, 624
SatI GCNGC 2 cut(s) 104, 337
Sau3AI GATC 2 cut(s) 88, 144
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 1 cut(s) 52
SetI ASST 5 cut(s) 100, 133, 197, 317, 344
SfcI CTRYAG 1 cut(s) 200
SgrAI CRCCGGYG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 3 cut(s) 78, 451, 649
SsiI CCGC 2 cut(s) 337, 383
SspI AATATT 1 cut(s) 354
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 227, 417, 439
TaiI ACGT 1 cut(s) 133
TasI AATT 3 cut(s) 78, 451, 649
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 2 cut(s) 134, 425
Tru1I TTAA 4 cut(s) 33, 77, 291, 624
Tru9I TTAA 4 cut(s) 33, 77, 291, 624
TscAI CASTG 1 cut(s) 420
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 4 cut(s) 123, 242, 444, 558
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 1 cut(s) 420
VspI ATTAAT 1 cut(s) 77
XagI CCTNNNNNAGG 1 cut(s) 226
XapI RAATTY 1 cut(s) 451
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.