Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002485

Physical Location & Seq

Genomic Coordinates Forward (+)

45793848 .. 45795223

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAGAAACTCCATTGGCAGAGTCTCCATGTCAAGATATTGAACACTTGCGGTATGTGAATGAGAAGGCAGTAGTTCAGTTTAAATGTTTGGACTTAGAAAACTCCAGTTTCCTGTCTTCTTCTGGCAAATCAACCGGTGATGTGCAAACAATCACAAGAAATGGGTCTCTACAGGATCAAAAGGATTGTAACAAACTGGCAATATCAAAAGTGTCCAACCAAGAGGCGTTTAATTTAGAAAGCCAACAGTTGGAGAATTCAGATGATCAAGAAAATTACCACGACCTTACTGAGGAATGTATTAGGTTGACAAGCGTGAATCTGGCTGATGAGGAGAACACGGATTTAGAAACCCAACAGCCTAAGACTTCAGGTACTGATGACATTTCTCATGGCCTAGTTCAAAATTCTATTACCTTGATCAGCTCGAAAGTGGCCCGGAAGGGGAAGATTGATTTAGAAAGTCAACGTCTTGTGAAACTTGGTAATCAAGGTAGTTCCCGGGGCAACAATGCACGATTACCTCTTGGACCTCCTTTACCAAAATCACCGTCAGAGTCTTGGCTAAAGCGTACCTTGCCTACCATTTCCTCCAGGAATTCATCTTCACAGTCATCTCTTGGTTCACGCATTTATACCAGCAGTCCGGTTTCTAAGGTATCCTCTCTCGATCCCAAGTGGGAGACGATTGTCAAAACTTCTAATGTGCATCACGGGCGTTCGCGGTTCTCTGAGGAACTTCTTACACCTATACCAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

255

Amino Acids

28.11

Weight (kDa)

5.36

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30990 AT2G30990 AT2G30990 AT2G30990 AT2G30990
fragaria_vesca	FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510
malus_domestica	MD09G1236600.v1.1 MD17G1266300.v1.1 MD17G1266400.v1.1
prunus_persica	Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1
pyrus_communis	pycom09g15510 pycom09g15520 pycom17g26590
rosa_chinensis	RchiOBHm_Chr2g0129801 RchiOBHm_Chr2g0129871 RchiOBHm_Chr7g0242591 RchiOBHm_Chr7g0242601
rosa_laevigata	RLG00000019104 RLG00000031611
rosa_multiflora	Rmu_sc0000650.1_g000026 Rmu_sc0007216.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114300
rosa_rugosa	Rorug02G0289800 Rorug02G0289900 Rorug02G0290000 Rorug02G0290100 Rorug02G0290200
rosa_samantha	Rh2AG340700 Rh2AG341300 Rh2BG349100 Rh2CG328000 Rh2DG367400 Rh3CG154600 Rh3DG155700
rosa_wichuraiana	Rw2G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccII	CGCG	1 cut(s)	727
AciI	CCGC	2 cut(s)	52, 727
AclWI	GGATC	2 cut(s)	186, 668
AcsI	RAATTY	3 cut(s)	259, 409, 601
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	379, 577
AfiI	CCNNNNNNNGG	3 cut(s)	253, 295, 447
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	44, 407
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	2 cut(s)	429, 764
AluI	AGCT	2 cut(s)	429, 764
Alw26I	GTCTC	3 cut(s)	30, 174, 680
AlwI	GGATC	2 cut(s)	186, 668
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	2 cut(s)	397, 438
ApoI	RAATTY	3 cut(s)	259, 409, 601
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AsiGI	ACCGGT	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	439, 533
AsuC2I	CCSGG	3 cut(s)	442, 505, 506
AsuHPI	GGTGA	2 cut(s)	152, 543
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	598
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	2 cut(s)	268, 423
BcnI	CCSGG	3 cut(s)	442, 505, 506
BcoDI	GTCTC	3 cut(s)	30, 174, 680
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	673
Bme1390I	CCNGG	4 cut(s)	442, 505, 506, 598
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	439, 533
BmrFI	CCNGG	4 cut(s)	442, 505, 506, 598
BmsI	GCATC	1 cut(s)	721
BoxI	GACNNNNGTC	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	2 cut(s)	91, 580
BpuMI	CCSGG	3 cut(s)	442, 505, 506
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	504, 505
BsaWI	WCCGGW	2 cut(s)	137, 649
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 295, 447
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	108, 204
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	2 cut(s)	504, 505
BseLI	CCNNNNNNNGG	3 cut(s)	253, 295, 447
BseMII	CTCAG	2 cut(s)	285, 726
BseNI	ACTGG	2 cut(s)	108, 204
BseRI	GAGGAG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	399, 440
BshTI	ACCGGT	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	4 cut(s)	138, 442, 505, 650
BslI	CCNNNNNNNGG	3 cut(s)	253, 295, 447
BsmAI	GTCTC	3 cut(s)	30, 174, 680
BsmBI	CGTCTC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	399, 440
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	178, 268, 423, 673
BspACI	CCGC	2 cut(s)	52, 727
BspANI	GGCC	2 cut(s)	399, 440
BspCNI	CTCAG	2 cut(s)	286, 727
BspFNI	CGCG	1 cut(s)	727
BspPI	GGATC	2 cut(s)	186, 668
BspTNI	GGTCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	108, 204
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	504, 505
BssMI	GATC	4 cut(s)	178, 268, 423, 673
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	3 cut(s)	252, 555, 615
BstDEI	CTNAG	6 cut(s)	97, 294, 366, 657, 735, 765
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	727
BstKTI	GATC	4 cut(s)	181, 271, 426, 676
BstMAI	GTCTC	3 cut(s)	30, 174, 680
BstMBI	GATC	4 cut(s)	178, 268, 423, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	580, 718
BstNI	CCWGG	1 cut(s)	598
BstPAI	GACNNNNGTC	1 cut(s)	692
BstSCI	CCNGG	4 cut(s)	440, 503, 504, 596
BstSFI	CTRYAG	1 cut(s)	173
BstUI	CGCG	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	399, 440
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	439, 533
Cfr9I	CCCGGG	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	378, 576
CspAI	ACCGGT	1 cut(s)	137
CviAII	CATG	2 cut(s)	30, 395
CviJI	RGCY	8 cut(s)	246, 329, 364, 399, 429, 440, 568, 764
CviKI_1	RGCY	8 cut(s)	246, 329, 364, 399, 429, 440, 568, 764
CviQI	GTAC	2 cut(s)	378, 576
DdeI	CTNAG	6 cut(s)	97, 294, 366, 657, 735, 765
DpnI	GATC	4 cut(s)	180, 270, 425, 675
DpnII	GATC	4 cut(s)	178, 268, 423, 673
DraI	TTTAAA	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRI	GAATTC	2 cut(s)	259, 601
EcoRII	CCWGG	1 cut(s)	596
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	2 cut(s)	33, 398
FaiI	YATR	5 cut(s)	31, 57, 396, 639, 755
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FatI	CATG	2 cut(s)	29, 394
FbaI	TGATCA	2 cut(s)	268, 423
FspBI	CTAG	1 cut(s)	401
GsuI	CTGGAG	2 cut(s)	91, 580
HaeIII	GGCC	2 cut(s)	399, 440
HapII	CCGG	4 cut(s)	138, 442, 505, 650
Hin1II	CATG	2 cut(s)	33, 398
HincII	GTYRAC	2 cut(s)	312, 470
HindII	GTYRAC	2 cut(s)	312, 470
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	3 cut(s)	23, 322, 560
HpaII	CCGG	4 cut(s)	138, 442, 505, 650
HphI	GGTGA	2 cut(s)	152, 543
Hpy166II	GTNNAC	3 cut(s)	312, 470, 629
Hpy188I	TCNGA	3 cut(s)	265, 559, 736
Hpy188III	TCNNGA	3 cut(s)	35, 272, 671
Hpy8I	GTNNAC	3 cut(s)	312, 470, 629
HpyAV	CCTTC	2 cut(s)	61, 439
HpyCH4III	ACNGT	3 cut(s)	252, 555, 615
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	148, 518, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	580, 718
HpyF3I	CTNAG	6 cut(s)	97, 294, 366, 657, 735, 765
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	2 cut(s)	33, 398
Ksp22I	TGATCA	2 cut(s)	268, 423
Kzo9I	GATC	4 cut(s)	178, 268, 423, 673
LweI	GCATC	1 cut(s)	721
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	4 cut(s)	180, 270, 425, 675
MboI	GATC	4 cut(s)	178, 268, 423, 673
MboII	GAAGA	5 cut(s)	17, 111, 114, 463, 600
MluCI	AATT	5 cut(s)	235, 259, 277, 409, 601
MlyI	GAGTC	2 cut(s)	32, 569
MmeI	TCCRAC	2 cut(s)	234, 243
MnlI	CCTC	8 cut(s)	220, 289, 328, 537, 546, 604, 676, 730
MseI	TTAA	2 cut(s)	84, 234
MspI	CCGG	4 cut(s)	138, 442, 505, 650
MspR9I	CCNGG	4 cut(s)	442, 505, 506, 598
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	2 cut(s)	580, 718
NciI	CCSGG	3 cut(s)	442, 505, 506
NdeII	GATC	4 cut(s)	178, 268, 423, 673
NlaIII	CATG	2 cut(s)	33, 398
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	596
PinAI	ACCGGT	1 cut(s)	137
PleI	GAGTC	2 cut(s)	31, 568
PpsI	GAGTC	2 cut(s)	31, 568
PshAI	GACNNNNGTC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspPI	GGNCC	2 cut(s)	439, 533
PstNI	CAGNNNCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	379, 577
RsaNI	GTAC	2 cut(s)	378, 576
SaqAI	TTAA	2 cut(s)	84, 234
Sau3AI	GATC	4 cut(s)	178, 268, 423, 673
Sau96I	GGNCC	2 cut(s)	439, 533
SchI	GAGTC	2 cut(s)	32, 569
ScrFI	CCNGG	4 cut(s)	442, 505, 506, 598
SfaNI	GCATC	1 cut(s)	721
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	533
SmaI	CCCGGG	1 cut(s)	506
Sse9I	AATT	5 cut(s)	235, 259, 277, 409, 601
SsiI	CCGC	2 cut(s)	52, 727
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	4 cut(s)	440, 503, 504, 596
TaaI	ACNGT	3 cut(s)	252, 555, 615
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	2 cut(s)	431, 672
TasI	AATT	5 cut(s)	235, 259, 277, 409, 601
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	84, 234
Tru9I	TTAA	2 cut(s)	84, 234
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	1 cut(s)	359
TspMI	CCCGGG	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	293
XapI	RAATTY	3 cut(s)	259, 409, 601
XmaI	CCCGGG	1 cut(s)	504
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.