Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002485

Physical Location & Seq

Genomic Coordinates Forward (+)

6741409 .. 6742478

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAGTCTATCTCTGCTAACACCTCAGCATTTGGTGCCACAACTCTGTCTTCTGAGGCCATTGGCACCCCATCATTCAGTGTTATAGGCTCTCAGGTCTTTGGTGGTACAAGTACTCCAGTCTTGGGCTCAACAAGGAGTCTTGCATTTGGAGATTCAAGAACCCAGCCATTTGATTCGCCTAGTTCCCTTTATGCTACTACTACATCAAGTGCACCTGGTTTTAGTTCTTCAAGTACTCCTTCCAGTTTTTCTTCCTCTCATGCTTTTGGCCAATCAAATTCCATATTTGGTATCGTTCCATGTTTTGAGTCTATACTTTATGACGGAAAATGTTTTCTTGGTAATCCTAAGAAAGCTAAGAGTTCCAAGGAGACTAGTAGCTCGGATAAATATAGAAAAGGCCATGTGGTTGAGAAGACACTATATGTTGATTTTGTACAGATAAGAAAATCTTCAAGTTCAAATTCATTTTCCTCATATATAAAGGGCGAGACAAAGGGACTTAATGATTACAGACGGAATGATTTGGACAATCTTGAAAGAAGTGGGGCAATGAAAGAAGCTCCATTGGCACAGTCTTCATTTCAAGATATTGAACACTCGAGGGATGTGAATGAGAAGGCAGTAGTTCTGTCTAAATGTTTGGACTTTTCTAACTCAAGGGATGTGAATGAGAAGGCTGTAGTTCAGTCTAAATGTTTGGACTTTTCCAACTCCAGTTTTCTGTCTTCTTCTAGCAAATCAACCAGTGATATGCAAACAATCACAAGAAATGGTTCTCTACATGATCAAAAGGATTCTAACAAACTGGCAATCTCAAAAGTGGCCAACCAAGATGAGTTTCATTTAGAAAGCCAACAGTTGAAGAATTCATATGATCAAGAAAATTGCCACAGCCTTACTCAGGAATGTATTAGTTCAAAATTCTATTACCTTGATCAGCTCGAAAGTGGCCAGGAGCGAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

325

Amino Acids

35.28

Weight (kDa)

6.11

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30990 AT2G30990 AT2G30990 AT2G30990 AT2G30990
fragaria_vesca	FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510
malus_domestica	MD09G1236600.v1.1 MD17G1266300.v1.1 MD17G1266400.v1.1
prunus_persica	Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1
pyrus_communis	pycom09g15510 pycom09g15520 pycom17g26590
rosa_chinensis	RchiOBHm_Chr2g0129801 RchiOBHm_Chr2g0129871 RchiOBHm_Chr7g0242591 RchiOBHm_Chr7g0242601
rosa_laevigata	RLG00000019104 RLG00000031611
rosa_multiflora	Rmu_sc0000650.1_g000026 Rmu_sc0007216.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114300
rosa_rugosa	Rorug02G0289800 Rorug02G0289900 Rorug02G0290000 Rorug02G0290100 Rorug02G0290200
rosa_samantha	Rh2AG340700 Rh2AG341300 Rh2BG349100 Rh2CG328000 Rh2DG367400 Rh3CG154600 Rh3DG155700
rosa_wichuraiana	Rw2G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 65
AcoI	YGGCCR	3 cut(s)	271, 828, 955
AcsI	RAATTY	4 cut(s)	280, 466, 871, 926
AfaI	GTAC	4 cut(s)	109, 115, 238, 441
AfiI	CCNNNNNNNGG	2 cut(s)	125, 907
AgsI	TTSAA	9 cut(s)	159, 234, 459, 465, 542, 590, 599, 868, 924
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	217, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AluBI	AGCT	4 cut(s)	359, 384, 566, 946
AluI	AGCT	4 cut(s)	359, 384, 566, 946
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	368, 488
Alw44I	GTGCAC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	604
AoxI	GGCC	5 cut(s)	57, 271, 403, 828, 955
ApaLI	GTGCAC	1 cut(s)	213
ApoI	RAATTY	4 cut(s)	280, 466, 871, 926
Asp700I	GAANNNNTTC	2 cut(s)	454, 778
AvaI	CYCGRG	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	3 cut(s)	273, 830, 957
BanI	GGYRCC	2 cut(s)	35, 65
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	4 cut(s)	42, 425, 573, 723
Bbv12I	GWGCWC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	219, 959
BclI	TGATCA	3 cut(s)	790, 880, 940
BcoDI	GTCTC	2 cut(s)	368, 488
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	3 cut(s)	183, 378, 738
BfmI	CTRYAG	1 cut(s)	684
BmcAI	AGTACT	2 cut(s)	115, 238
Bme1390I	CCNGG	2 cut(s)	219, 959
BmeT110I	CYCGRG	1 cut(s)	604
BmiI	GGNNCC	2 cut(s)	37, 67
BmrFI	CCNGG	2 cut(s)	219, 959
BpiI	GAAGAC	4 cut(s)	42, 425, 573, 723
BpmI	CTGGAG	2 cut(s)	102, 703
Bpu10I	CCTNAGC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 907
Bse1I	ACTGG	5 cut(s)	119, 246, 720, 750, 816
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	219, 959
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	616, 673
BseLI	CCNNNNNNNGG	2 cut(s)	125, 907
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	4 cut(s)	39, 45, 107, 920
BseNI	ACTGG	5 cut(s)	119, 246, 720, 750, 816
BseSI	GKGCMC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	165
BshFI	GGCC	5 cut(s)	59, 273, 405, 830, 957
BshNI	GGYRCC	2 cut(s)	35, 65
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	125, 907
BsmAI	GTCTC	2 cut(s)	368, 488
BsmFI	GGGAC	1 cut(s)	516
BsnI	GGCC	5 cut(s)	59, 273, 405, 830, 957
BsoBI	CYCGRG	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	131, 217
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	790, 880, 940
BspANI	GGCC	5 cut(s)	59, 273, 405, 830, 957
BspCNI	CTCAG	4 cut(s)	38, 46, 106, 919
BspLI	GGNNCC	2 cut(s)	37, 67
BspT107I	GGYRCC	2 cut(s)	35, 65
BsrDI	GCAATG	1 cut(s)	561
BsrGI	TGTACA	1 cut(s)	439
BsrI	ACTGG	5 cut(s)	119, 246, 720, 750, 816
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	3 cut(s)	790, 880, 940
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	2 cut(s)	219, 959
Bst4CI	ACNGT	2 cut(s)	579, 864
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	439
BstDEI	CTNAG	6 cut(s)	25, 54, 93, 351, 360, 906
BstENI	CCTNNNNNAGG	1 cut(s)	905
BstF5I	GGATG	2 cut(s)	616, 673
BstKTI	GATC	3 cut(s)	793, 883, 943
BstMAI	GTCTC	2 cut(s)	368, 488
BstMBI	GATC	3 cut(s)	790, 880, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 572
BstNI	CCWGG	2 cut(s)	219, 959
BstSCI	CCNGG	2 cut(s)	217, 957
BstSFI	CTRYAG	1 cut(s)	684
BstSLI	GKGCMC	1 cut(s)	217
BstV2I	GAAGAC	4 cut(s)	42, 425, 573, 723
BsuRI	GGCC	5 cut(s)	59, 273, 405, 830, 957
BtsCI	GGATG	2 cut(s)	616, 673
BtsIMutI	CAGTG	2 cut(s)	85, 757
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	4 cut(s)	108, 114, 237, 440
CviAII	CATG	4 cut(s)	263, 303, 407, 788
CviQI	GTAC	4 cut(s)	108, 114, 237, 440
DdeI	CTNAG	6 cut(s)	25, 54, 93, 351, 360, 906
DpnI	GATC	3 cut(s)	792, 882, 942
DpnII	GATC	3 cut(s)	790, 880, 940
EaeI	YGGCCR	3 cut(s)	271, 828, 955
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	604
EcoNI	CCTNNNNNAGG	1 cut(s)	905
EcoRI	GAATTC	1 cut(s)	871
EcoRII	CCWGG	2 cut(s)	217, 957
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	4 cut(s)	266, 306, 410, 791
FalI	AAGNNNNNCTT	4 cut(s)	226, 258, 439, 471
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	4 cut(s)	262, 302, 406, 787
FauNDI	CATATG	1 cut(s)	877
FbaI	TGATCA	3 cut(s)	790, 880, 940
FokI	GGATG	2 cut(s)	623, 680
FriOI	GRGCYC	1 cut(s)	131
FspBI	CTAG	3 cut(s)	183, 378, 738
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	102, 703
HaeIII	GGCC	5 cut(s)	59, 273, 405, 830, 957
Hin1II	CATG	4 cut(s)	266, 306, 410, 791
HinfI	GANTC	5 cut(s)	139, 155, 176, 311, 800
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	55, 388
Hpy188III	TCNNGA	5 cut(s)	159, 539, 590, 884, 908
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	252, 616, 673
HpyCH4III	ACNGT	2 cut(s)	579, 864
HpyCH4V	TGCA	3 cut(s)	146, 215, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 572
HpyF3I	CTNAG	6 cut(s)	25, 54, 93, 351, 360, 906
Hsp92II	CATG	4 cut(s)	266, 306, 410, 791
Ksp22I	TGATCA	3 cut(s)	790, 880, 940
Kzo9I	GATC	3 cut(s)	790, 880, 940
LmnI	GCTCC	2 cut(s)	571, 961
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	3 cut(s)	183, 378, 738
MalI	GATC	3 cut(s)	792, 882, 942
MboI	GATC	3 cut(s)	790, 880, 940
MboII	GAAGA	9 cut(s)	42, 222, 246, 430, 447, 573, 723, 726, 880
MhlI	GDGCHC	2 cut(s)	131, 217
MlsI	TGGCCA	3 cut(s)	273, 830, 957
MluCI	AATT	5 cut(s)	280, 466, 871, 889, 926
MluNI	TGGCCA	3 cut(s)	273, 830, 957
MlyI	GAGTC	2 cut(s)	148, 320
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	5 cut(s)	34, 49, 268, 487, 600
Mox20I	TGGCCA	3 cut(s)	273, 830, 957
MroXI	GAANNNNTTC	2 cut(s)	454, 778
MscI	TGGCCA	3 cut(s)	273, 830, 957
MseI	TTAA	1 cut(s)	507
Msp20I	TGGCCA	3 cut(s)	273, 830, 957
MspR9I	CCNGG	2 cut(s)	219, 959
MvaI	CCWGG	2 cut(s)	219, 959
MwoI	GCNNNNNNNGC	2 cut(s)	35, 572
NdeI	CATATG	1 cut(s)	877
NdeII	GATC	3 cut(s)	790, 880, 940
NlaIII	CATG	4 cut(s)	266, 306, 410, 791
NlaIV	GGNNCC	2 cut(s)	37, 67
PaeR7I	CTCGAG	1 cut(s)	604
PdmI	GAANNNNTTC	2 cut(s)	454, 778
PfeI	GAWTC	3 cut(s)	155, 176, 800
PleI	GAGTC	2 cut(s)	147, 319
PpsI	GAGTC	2 cut(s)	147, 319
Psp6I	CCWGG	2 cut(s)	217, 957
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	2 cut(s)	217, 957
PspN4I	GGNNCC	2 cut(s)	37, 67
PspXI	VCTCGAGB	1 cut(s)	604
RsaI	GTAC	4 cut(s)	109, 115, 238, 441
RsaNI	GTAC	4 cut(s)	108, 114, 237, 440
SaqAI	TTAA	1 cut(s)	507
Sau3AI	GATC	3 cut(s)	790, 880, 940
ScaI	AGTACT	2 cut(s)	115, 238
SchI	GAGTC	2 cut(s)	148, 320
ScrFI	CCNGG	2 cut(s)	219, 959
SduI	GDGCHC	2 cut(s)	131, 217
SetI	ASST	8 cut(s)	26, 99, 220, 361, 386, 568, 939, 948
SexAI	ACCWGGT	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	684
Sfr274I	CTCGAG	1 cut(s)	604
SlaI	CTCGAG	1 cut(s)	604
SmlI	CTYRAG	2 cut(s)	604, 661
SmoI	CTYRAG	2 cut(s)	604, 661
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	5 cut(s)	280, 466, 871, 889, 926
SspMI	CTAG	3 cut(s)	183, 378, 738
StyD4I	CCNGG	2 cut(s)	217, 957
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	579, 864
TaqI	TCGA	2 cut(s)	605, 948
TasI	AATT	5 cut(s)	280, 466, 871, 889, 926
TatI	WGTACW	3 cut(s)	113, 236, 439
TfiI	GAWTC	3 cut(s)	155, 176, 800
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	2 cut(s)	85, 757
TspDTI	ATGAA	6 cut(s)	17, 459, 572, 573, 836, 864
TspGWI	ACGGA	2 cut(s)	342, 535
TspRI	CASTG	2 cut(s)	85, 757
VneI	GTGCAC	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	905
XapI	RAATTY	4 cut(s)	280, 466, 871, 926
XhoI	CTCGAG	1 cut(s)	604
XmnI	GAANNNNTTC	2 cut(s)	454, 778
XspI	CTAG	3 cut(s)	183, 378, 738
ZrmI	AGTACT	2 cut(s)	115, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.