Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002485

Physical Location & Seq

Genomic Coordinates Reverse (-)

31740097 .. 31740543

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0289900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTGGTGTTAGGGGAATATGACGACCTGAGTGCAGTGGAGGCAGTGCCTCTGCATATGGTGGAAACTTGGGTTAGCATTAAAGGGCTACCTCCCCGTCTGAGGATAGAGGAAACCCTCATTCTCATTGGTTCCTCAATGGGTAGGTTTTCGAGAGCTGATACGCTGCCCTTGCAGCGTGGAGTGGCCGAGAAAACGTTCTGTGGACAGGTGGACGTCTGGCGTCAACTATGGAGTGCCCGTGGGTTCACGATCAACGCTAGGATCTCAGCGGACGTACAGATCAGGTACGAGAAATTCAAAGGGCTATGCAGGGATTGTGGGTTATTCTCTCATGAGGCAGAGGGGTGCGACAAATTTCTGTCGATCCAGAGAGAGAAACAATCATCGGGGGCAGCTCTGGCGTTGGTAGGCCCGGCCTTGGCATCAGGTGCTCATTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

148

Amino Acids

16.29

Weight (kDa)

6.3

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30990 AT2G30990 AT2G30990 AT2G30990 AT2G30990
fragaria_vesca	FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510 FvH4_6g27510
malus_domestica	MD09G1236600.v1.1 MD17G1266300.v1.1 MD17G1266400.v1.1
prunus_persica	Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1 Prupe.3G117500_v2.0.a1
pyrus_communis	pycom09g15510 pycom09g15520 pycom17g26590
rosa_chinensis	RchiOBHm_Chr2g0129801 RchiOBHm_Chr2g0129871 RchiOBHm_Chr7g0242591 RchiOBHm_Chr7g0242601
rosa_laevigata	RLG00000019104 RLG00000031611
rosa_multiflora	Rmu_sc0000650.1_g000026 Rmu_sc0007216.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114300
rosa_rugosa	Rorug02G0289800 Rorug02G0289900 Rorug02G0290000 Rorug02G0290100 Rorug02G0290200
rosa_samantha	Rh2AG340700 Rh2AG341300 Rh2BG349100 Rh2CG328000 Rh2DG367400 Rh3CG154600 Rh3DG155700
rosa_wichuraiana	Rw2G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
AciI	CCGC	1 cut(s)	272
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	2 cut(s)	272, 361
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	296, 356
AcyI	GRCGYC	2 cut(s)	216, 223
AfaI	GTAC	2 cut(s)	279, 290
AfiI	CCNNNNNNNGG	2 cut(s)	102, 421
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	2 cut(s)	158, 398
AluI	AGCT	2 cut(s)	158, 398
Alw21I	GWGCWC	1 cut(s)	436
AlwI	GGATC	2 cut(s)	272, 361
AoxI	GGCC	3 cut(s)	186, 412, 417
ApeKI	GCWGC	3 cut(s)	166, 175, 395
ApoI	RAATTY	2 cut(s)	296, 356
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	153, 187, 407
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BcnI	CCSGG	1 cut(s)	416
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	3 cut(s)	167, 176, 396
BlsI	GCNGC	3 cut(s)	168, 177, 397
Bme1390I	CCNGG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	416
BsaHI	GRCGYC	2 cut(s)	216, 223
BsaJI	CCNNGG	2 cut(s)	241, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 421
BseDI	CCNNGG	2 cut(s)	241, 420
BseLI	CCNNNNNNNGG	2 cut(s)	102, 421
BseMII	CTCAG	3 cut(s)	20, 92, 282
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	153, 187, 407
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	188, 414, 419
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	102, 421
BsnI	GGCC	3 cut(s)	188, 414, 419
Bsp1286I	GDGCHC	2 cut(s)	241, 436
Bsp143I	GATC	4 cut(s)	252, 264, 282, 366
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	3 cut(s)	188, 414, 419
BspCNI	CTCAG	3 cut(s)	21, 93, 281
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	272, 361
BssECI	CCNNGG	2 cut(s)	241, 420
BssMI	GATC	4 cut(s)	252, 264, 282, 366
BssNI	GRCGYC	2 cut(s)	216, 223
BssT1I	CCWWGG	1 cut(s)	420
BstACI	GRCGYC	2 cut(s)	216, 223
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	29, 101, 268
BstDSI	CCRYGG	1 cut(s)	241
BstKTI	GATC	4 cut(s)	255, 267, 285, 369
BstMBI	GATC	4 cut(s)	252, 264, 282, 366
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 172, 175, 401, 431
BstSCI	CCNGG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	153, 187, 407
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	188, 414, 419
BtgI	CCRYGG	1 cut(s)	241
BtsI	GCAGTG	2 cut(s)	42, 51
BtsIMutI	CAGTG	2 cut(s)	42, 51
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	278, 289
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	7 cut(s)	88, 158, 188, 307, 398, 414, 419
CviKI_1	RGCY	7 cut(s)	88, 158, 188, 307, 398, 414, 419
CviQI	GTAC	2 cut(s)	278, 289
DdeI	CTNAG	3 cut(s)	29, 101, 268
DpnI	GATC	4 cut(s)	254, 266, 284, 368
DpnII	GATC	4 cut(s)	252, 264, 282, 366
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	338
FaiI	YATR	6 cut(s)	21, 57, 59, 232, 310, 336
FatI	CATG	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	167, 176, 396
Fsp4HI	GCNGC	3 cut(s)	167, 176, 396
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	3 cut(s)	167, 176, 396
HaeIII	GGCC	3 cut(s)	188, 414, 419
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	212
Hin1I	GRCGYC	2 cut(s)	216, 223
Hin1II	CATG	1 cut(s)	338
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	416
Hpy166II	GTNNAC	4 cut(s)	206, 214, 227, 249
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	4 cut(s)	153, 250, 335, 370
Hpy8I	GTNNAC	4 cut(s)	206, 214, 227, 249
HpyCH4IV	ACGT	3 cut(s)	197, 216, 276
HpyCH4V	TGCA	4 cut(s)	35, 55, 175, 312
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 172, 175, 401, 431
HpyF3I	CTNAG	3 cut(s)	29, 101, 268
HpySE526I	ACGT	3 cut(s)	197, 216, 276
Hsp92I	GRCGYC	2 cut(s)	216, 223
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	4 cut(s)	252, 264, 282, 366
LpnPI	CCDG	9 cut(s)	41, 194, 205, 271, 298, 383, 386, 414, 429
Lsp1109I	GCAGC	3 cut(s)	153, 187, 407
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	3 cut(s)	197, 216, 276
MalI	GATC	4 cut(s)	254, 266, 284, 368
MboI	GATC	4 cut(s)	252, 264, 282, 366
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	241, 436
MluCI	AATT	2 cut(s)	296, 356
MnlI	CCTC	9 cut(s)	34, 60, 96, 102, 103, 128, 145, 331, 337
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	5 cut(s)	41, 172, 175, 401, 431
NciI	CCSGG	1 cut(s)	416
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	4 cut(s)	252, 264, 282, 366
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	214
PagI	TCATGA	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	168, 177, 397
Psp1406I	AACGTT	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	2 cut(s)	279, 290
RsaNI	GTAC	2 cut(s)	278, 289
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	167, 176, 396
Sau3AI	GATC	4 cut(s)	252, 264, 282, 366
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	2 cut(s)	241, 436
SfaNI	GCATC	1 cut(s)	434
Sse9I	AATT	2 cut(s)	296, 356
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	3 cut(s)	200, 219, 279
TaqI	TCGA	2 cut(s)	152, 365
TasI	AATT	2 cut(s)	296, 356
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	42, 51
TseI	GCWGC	3 cut(s)	166, 175, 395
TspRI	CASTG	2 cut(s)	42, 51
XapI	RAATTY	2 cut(s)	296, 356
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.