Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018181

Physical Location & Seq

Genomic Coordinates Reverse (-)

44122965 .. 44123651

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCGAGCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGCGGCATACCGGTTCCCATTGCTATTGGAGGCCACGGACTGGCACCTGGTTTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTTCCCAAGAGAACATAGGGAAAAGAATTCTCACTCTATTATTTCCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

113

Amino Acids

12.39

Weight (kDa)

9.25

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406771 RchiOBHm_Chr7g0227841 RchiOBHm_Chr7g0232491
rosa_laevigata	RLG00000021654 RLG00000031617
rosa_roxburghii	Rroxscaffold_1G00031370 Rroxscaffold_4G00280740 Rroxscaffold_4G00309570 Rroxscaffold_6G00413370
rosa_rugosa	Rorug02G0290200
rosa_samantha	Rh4CG164400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	193
AciI	CCGC	2 cut(s)	156, 214
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	18, 312, 335
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	193, 233
AflIII	ACRYGT	1 cut(s)	126
AgeI	ACCGGT	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	46, 118
AjnI	CCWGG	1 cut(s)	199
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	2 cut(s)	184, 282
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	3 cut(s)	18, 312, 335
AsiGI	ACCGGT	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	261
BisI	GCNGC	2 cut(s)	157, 252
BlsI	GCNGC	2 cut(s)	158, 253
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	4 cut(s)	168, 198, 212, 285
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 233
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	193, 233
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	186, 284
BshNI	GGYRCC	1 cut(s)	196
BshTI	ACCGGT	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	193, 233
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	186, 284
Bsp143I	GATC	2 cut(s)	220, 261
BspACI	CCGC	2 cut(s)	156, 214
BspANI	GGCC	2 cut(s)	186, 284
BspLI	GGNNCC	4 cut(s)	168, 198, 212, 285
BspPI	GGATC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	220, 261
Bst2UI	CCWGG	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	2 cut(s)	223, 264
BstMBI	GATC	2 cut(s)	220, 261
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 248
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	186, 284
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	283
CsiI	ACCWGGT	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	124
CspAI	ACCGGT	1 cut(s)	163
CviAII	CATG	2 cut(s)	150, 272
CviJI	RGCY	3 cut(s)	55, 186, 284
CviKI_1	RGCY	3 cut(s)	55, 186, 284
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	2 cut(s)	222, 263
DpnII	GATC	2 cut(s)	220, 261
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	153, 275
FaiI	YATR	6 cut(s)	12, 151, 161, 260, 273, 302
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	149, 271
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	157, 252
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	157, 252
GluI	GCNGC	2 cut(s)	157, 252
HaeIII	GGCC	2 cut(s)	186, 284
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	153, 275
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	36
HpaI	GTTAAC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	58, 297
HpyCH4IV	ACGT	2 cut(s)	48, 126
HpyCH4V	TGCA	2 cut(s)	254, 271
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 248
HpySE526I	ACGT	2 cut(s)	48, 126
Hsp92II	CATG	2 cut(s)	153, 275
Ksp22I	TGATCA	1 cut(s)	261
KspAI	GTTAAC	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	220, 261
LpnPI	CCDG	6 cut(s)	65, 106, 177, 179, 186, 213
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	85
MabI	ACCWGGT	1 cut(s)	199
MaeII	ACGT	2 cut(s)	48, 126
MalI	GATC	2 cut(s)	222, 263
MboI	GATC	2 cut(s)	220, 261
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	3 cut(s)	18, 312, 335
MnlI	CCTC	2 cut(s)	176, 274
MseI	TTAA	1 cut(s)	131
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 248
NdeII	GATC	2 cut(s)	220, 261
NlaIII	CATG	2 cut(s)	153, 275
NlaIV	GGNNCC	4 cut(s)	168, 198, 212, 285
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	158, 253
Ppu21I	YACGTR	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	4 cut(s)	168, 198, 212, 285
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	2 cut(s)	157, 252
Sau3AI	GATC	2 cut(s)	220, 261
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	5 cut(s)	51, 125, 129, 137, 202
SexAI	ACCWGGT	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	3 cut(s)	18, 312, 335
SsiI	CCGC	2 cut(s)	156, 214
StyD4I	CCNGG	1 cut(s)	199
TaiI	ACGT	2 cut(s)	51, 129
TaqI	TCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	18, 312, 335
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	193
XapI	RAATTY	3 cut(s)	18, 312, 335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.