Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018181

Physical Location & Seq

Genomic Coordinates Reverse (-)

3193041 .. 3193727

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCCGAGCAAGAAGTTTGAACATGTACGTGTTAACCTACCCAATGGGGACATGGTGCGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTACCGATCAAGCTGTCAAGGTTCCCATTGCTATTGGAGGCCACGGACCGGCACCTGGTTTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTCAGGCCCCTTCCCAAGAGAACATAGGGAAAAGAATTCTAACTCTATTATTTCCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

131

Amino Acids

14.19

Weight (kDa)

8.79

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	2 - 73	3e-19	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406771 RchiOBHm_Chr7g0227841 RchiOBHm_Chr7g0232491
rosa_laevigata	RLG00000021654 RLG00000031617
rosa_roxburghii	Rroxscaffold_1G00031370 Rroxscaffold_4G00280740 Rroxscaffold_4G00309570 Rroxscaffold_6G00413370
rosa_rugosa	Rorug02G0290200
rosa_samantha	Rh4CG164400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AciI	CCGC	2 cut(s)	157, 268
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	18, 366, 389
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	247, 254, 287
AflIII	ACRYGT	2 cut(s)	121, 127
AgsI	TTSAA	2 cut(s)	46, 119
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	3 cut(s)	177, 238, 336
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	3 cut(s)	18, 366, 389
AspS9I	GGNCC	2 cut(s)	245, 337
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	315
BisI	GCNGC	2 cut(s)	158, 306
BlsI	GCNGC	2 cut(s)	159, 307
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	245, 337
BmiI	GGNNCC	4 cut(s)	222, 252, 266, 339
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 254, 287
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	3 cut(s)	247, 254, 287
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	3 cut(s)	179, 240, 338
BshNI	GGYRCC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	3 cut(s)	247, 254, 287
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	179, 240, 338
Bsp143I	GATC	3 cut(s)	205, 274, 315
BspACI	CCGC	2 cut(s)	157, 268
BspANI	GGCC	3 cut(s)	179, 240, 338
BspLI	GGNNCC	4 cut(s)	222, 252, 266, 339
BspPI	GGATC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	205, 274, 315
Bst2UI	CCWGG	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	3 cut(s)	208, 277, 318
BstMBI	GATC	3 cut(s)	205, 274, 315
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 197, 302
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	179, 240, 338
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	245, 337
CpoI	CGGWCCG	1 cut(s)	245
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CspI	CGGWCCG	1 cut(s)	245
CviAII	CATG	3 cut(s)	122, 151, 326
CviJI	RGCY	6 cut(s)	55, 179, 200, 212, 240, 338
CviKI_1	RGCY	6 cut(s)	55, 179, 200, 212, 240, 338
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	3 cut(s)	207, 276, 317
DpnII	GATC	3 cut(s)	205, 274, 315
Eco47I	GGWCC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	125, 154, 329
FaiI	YATR	7 cut(s)	12, 123, 152, 162, 314, 327, 356
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	121, 150, 325
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	158, 306
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	158, 306
GluI	GCNGC	2 cut(s)	158, 306
HaeIII	GGCC	3 cut(s)	179, 240, 338
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	3 cut(s)	125, 154, 329
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	36
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	105, 282
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	58, 351
HpyCH4IV	ACGT	2 cut(s)	48, 127
HpyCH4V	TGCA	3 cut(s)	195, 308, 325
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 197, 302
HpySE526I	ACGT	2 cut(s)	48, 127
Hsp92II	CATG	3 cut(s)	125, 154, 329
Ksp22I	TGATCA	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	205, 274, 315
LpnPI	CCDG	6 cut(s)	65, 150, 240, 261, 267, 320
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	85
MabI	ACCWGGT	1 cut(s)	253
MaeII	ACGT	2 cut(s)	48, 127
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	207, 276, 317
MboI	GATC	3 cut(s)	205, 274, 315
MboII	GAAGA	1 cut(s)	269
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	4 cut(s)	18, 183, 366, 389
MnlI	CCTC	2 cut(s)	169, 230
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	126, 165
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 197, 302
NdeII	GATC	3 cut(s)	205, 274, 315
NlaIII	CATG	3 cut(s)	125, 154, 329
NlaIV	GGNNCC	4 cut(s)	222, 252, 266, 339
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	125
PciI	ACATGT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	159, 307
Ppu21I	YACGTR	1 cut(s)	128
PscI	ACATGT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	4 cut(s)	222, 252, 266, 339
PspPI	GGNCC	2 cut(s)	245, 337
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	2 cut(s)	126, 165
Rsr2I	CGGWCCG	1 cut(s)	245
RsrII	CGGWCCG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	158, 306
Sau3AI	GATC	3 cut(s)	205, 274, 315
Sau96I	GGNCC	2 cut(s)	245, 337
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	6 cut(s)	51, 130, 138, 214, 222, 256
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	2 cut(s)	126, 165
Sse9I	AATT	4 cut(s)	18, 183, 366, 389
SsiI	CCGC	2 cut(s)	157, 268
StyD4I	CCNGG	1 cut(s)	253
TaiI	ACGT	2 cut(s)	51, 130
TasI	AATT	4 cut(s)	18, 183, 366, 389
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	3 cut(s)	18, 366, 389
XceI	RCATGY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.