Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018181

Physical Location & Seq

Genomic Coordinates Forward (+)

6774070 .. 6775308

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATAGTGGAAAAAGAATGAAAAGATGGATAAGGACGAAGACTAGTGAGACTGTAAAATTTGGCCACGTTACTTTCTTCTGGAATGGGAATCGCTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAATGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCGAGAAGTTTAAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGCGGCATACTAGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGGTTCCCATTGCTATTGGAGGCCACGGACTGGCACCTGGTTTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTTCCCAAGAGAACATAGGGAAAAGAATTCTCACTCTATTATTTCCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

171

Amino Acids

18.83

Weight (kDa)

9.48

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	13 - 112	6.5e-29	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406771 RchiOBHm_Chr7g0227841 RchiOBHm_Chr7g0232491
rosa_laevigata	RLG00000021654 RLG00000031617
rosa_roxburghii	Rroxscaffold_1G00031370 Rroxscaffold_4G00280740 Rroxscaffold_4G00309570 Rroxscaffold_6G00413370
rosa_rugosa	Rorug02G0290200
rosa_samantha	Rh4CG164400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	364
AciI	CCGC	2 cut(s)	274, 385
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	4 cut(s)	59, 135, 483, 506
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	118, 364, 404
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	163
AhlI	ACTAGT	2 cut(s)	44, 281
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	4 cut(s)	64, 294, 355, 453
ApeKI	GCWGC	2 cut(s)	317, 422
ApoI	RAATTY	4 cut(s)	59, 135, 483, 506
AspS9I	GGNCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	304, 409
BccI	CCATC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	2 cut(s)	322, 432
BcoDI	GTCTC	1 cut(s)	44
BcuI	ACTAGT	2 cut(s)	44, 281
BfaI	CTAG	2 cut(s)	45, 282
BisI	GCNGC	3 cut(s)	275, 318, 423
BlsI	GCNGC	3 cut(s)	276, 319, 424
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	4 cut(s)	339, 369, 383, 456
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	92, 202
BpiI	GAAGAC	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 364, 404
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	107, 217
BseLI	CCNNNNNNNGG	3 cut(s)	118, 364, 404
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	304, 409
BshFI	GGCC	4 cut(s)	66, 296, 357, 455
BshNI	GGYRCC	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	3 cut(s)	118, 364, 404
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	4 cut(s)	66, 296, 357, 455
Bsp143I	GATC	3 cut(s)	322, 391, 432
BspACI	CCGC	2 cut(s)	274, 385
BspANI	GGCC	4 cut(s)	66, 296, 357, 455
BspCNI	CTCAG	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	339, 369, 383, 456
BspPI	GGATC	1 cut(s)	399
BspT107I	GGYRCC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	3 cut(s)	322, 391, 432
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	55
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	107, 217
BstKTI	GATC	3 cut(s)	325, 394, 435
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	322, 391, 432
BstMWI	GCNNNNNNNGC	6 cut(s)	102, 203, 212, 314, 326, 419
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	304, 409
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	4 cut(s)	66, 296, 357, 455
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	107, 217
Cac8I	GCNNGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	454
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	2 cut(s)	268, 443
CviJI	RGCY	7 cut(s)	66, 172, 296, 317, 329, 357, 455
CviKI_1	RGCY	7 cut(s)	66, 172, 296, 317, 329, 357, 455
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	3 cut(s)	324, 393, 434
DpnII	GATC	3 cut(s)	322, 391, 432
DraI	TTTAAA	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	271, 446
FaiI	YATR	6 cut(s)	129, 269, 279, 431, 444, 473
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	267, 442
FbaI	TGATCA	2 cut(s)	322, 432
Fnu4HI	GCNGC	3 cut(s)	275, 318, 423
FokI	GGATG	2 cut(s)	114, 224
Fsp4HI	GCNGC	3 cut(s)	275, 318, 423
FspBI	CTAG	2 cut(s)	45, 282
GluI	GCNGC	3 cut(s)	275, 318, 423
HaeIII	GGCC	4 cut(s)	66, 296, 357, 455
Hin1II	CATG	2 cut(s)	271, 446
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	91, 153
HpaI	GTTAAC	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	222, 399
Hpy188III	TCNNGA	2 cut(s)	82, 99
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	175, 468
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	69, 244
HpyCH4V	TGCA	3 cut(s)	312, 425, 442
HpyF10VI	GCNNNNNNNGC	6 cut(s)	102, 203, 212, 314, 326, 419
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	69, 244
Hsp92II	CATG	2 cut(s)	271, 446
Ksp22I	TGATCA	2 cut(s)	322, 432
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	322, 391, 432
LpnPI	CCDG	8 cut(s)	67, 84, 126, 182, 224, 350, 357, 384
Lsp1109I	GCAGC	2 cut(s)	304, 409
LweI	GCATC	2 cut(s)	92, 202
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	2 cut(s)	45, 282
MaeII	ACGT	2 cut(s)	69, 244
MaeIII	GTNAC	2 cut(s)	70, 284
MalI	GATC	3 cut(s)	324, 393, 434
MboI	GATC	3 cut(s)	322, 391, 432
MboII	GAAGA	3 cut(s)	52, 70, 386
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	5 cut(s)	59, 135, 300, 483, 506
MluNI	TGGCCA	1 cut(s)	66
MnlI	CCTC	4 cut(s)	115, 286, 347, 445
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	3 cut(s)	108, 234, 249
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	372
MssI	GTTTAAAC	1 cut(s)	235
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	6 cut(s)	102, 203, 212, 314, 326, 419
NdeII	GATC	3 cut(s)	322, 391, 432
NlaIII	CATG	2 cut(s)	271, 446
NlaIV	GGNNCC	4 cut(s)	339, 369, 383, 456
NmuCI	GTSAC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	91, 153
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	276, 319, 424
PmeI	GTTTAAAC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	4 cut(s)	339, 369, 383, 456
PspPI	GGNCC	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	108, 234, 249
SatI	GCNGC	3 cut(s)	275, 318, 423
Sau3AI	GATC	3 cut(s)	322, 391, 432
Sau96I	GGNCC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	7 cut(s)	72, 243, 247, 255, 331, 339, 373
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	92, 202
SmiMI	CAYNNNNRTG	1 cut(s)	282
SpeI	ACTAGT	2 cut(s)	44, 281
Sse9I	AATT	5 cut(s)	59, 135, 300, 483, 506
SsiI	CCGC	2 cut(s)	274, 385
SspMI	CTAG	2 cut(s)	45, 282
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	72, 247
TasI	AATT	5 cut(s)	59, 135, 300, 483, 506
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	91, 153
Tru1I	TTAA	3 cut(s)	108, 234, 249
Tru9I	TTAA	3 cut(s)	108, 234, 249
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	317, 422
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	35, 194
TspGWI	ACGGA	1 cut(s)	375
Van91I	CCANNNNNTGG	1 cut(s)	364
XapI	RAATTY	4 cut(s)	59, 135, 483, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	2 cut(s)	45, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.