Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018181

Physical Location & Seq

Genomic Coordinates Forward (+)

77023551 .. 77026922

Gene Structure 3372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTCCAGCCGCATAACATTTCTGTAACTTACAGAGGCCGCACAGGAGATATCCCTCTCATCACAGACGCCGCACAATCTCTATCCCTCTCATCACAGACGCCGCATCACACACACCCTCCCTCTGACGCCGCCTCAGCCTCTCATCACGATTTCGGGTTGGAAATCGAAGCCTCAATCAAGGCTGCTTGGCAATTTGATTCAGAACCCCCAGAGATTGATAGAACATCCGGGGAATATCTAACTTACAACGGTGTCCGTACTTTTGCCTGCAGTGAGACTGTAAAATTTGGCCACGTTACTTTCTTCTGGAATGGGAATCGCTCTGGATGCTTTAACCCTAAAATGGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATCTCATTCAATGTCCAGCCAAAGATGAAGGCATTGGAGATTGCTGAAAAGGCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGTGCGGCATACTGGTGACATTGAGGCCACAATTGTTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGGTTCCCATTGCTATTGGAGGCCACGGACTGGCACCTGGTTTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACAATGATCAATCTGCATGGATTTGAGGCCCCTTCCCAACAGAACATAGGAAAAAGAATTCTCACTCTATTTTTTCCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

247

Amino Acids

26.89

Weight (kDa)

6.55

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	68 - 188	1.9e-35	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406771 RchiOBHm_Chr7g0227841 RchiOBHm_Chr7g0232491
rosa_laevigata	RLG00000021654 RLG00000031617
rosa_roxburghii	Rroxscaffold_1G00031370 Rroxscaffold_4G00280740 Rroxscaffold_4G00309570 Rroxscaffold_6G00413370
rosa_rugosa	Rorug02G0290200
rosa_samantha	Rh4CG164400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	592
AciI	CCGC	7 cut(s)	11, 40, 72, 104, 132, 502, 613
AclWI	GGATC	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	4 cut(s)	287, 363, 711, 734
AcyI	GRCGYC	3 cut(s)	69, 101, 129
AfaI	GTAC	2 cut(s)	262, 471
AfiI	CCNNNNNNNGG	3 cut(s)	346, 592, 632
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	391, 464
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	1 cut(s)	557
AluI	AGCT	1 cut(s)	557
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	627
AoxI	GGCC	5 cut(s)	37, 292, 522, 583, 681
ApeKI	GCWGC	3 cut(s)	185, 545, 650
ApoI	RAATTY	4 cut(s)	287, 363, 711, 734
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	595
BbvCI	CCTCAGC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	172, 532, 637
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	2 cut(s)	550, 660
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	271
BisI	GCNGC	9 cut(s)	11, 40, 72, 104, 132, 186, 503, 546, 651
BlsI	GCNGC	9 cut(s)	12, 41, 73, 105, 133, 187, 504, 547, 652
Bme1390I	CCNGG	2 cut(s)	232, 600
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	4 cut(s)	567, 597, 611, 684
BmrFI	CCNGG	2 cut(s)	232, 600
BmsI	GCATC	3 cut(s)	115, 320, 430
Bpu10I	CCTNAGC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	473
BsaHI	GRCGYC	3 cut(s)	69, 101, 129
BsaJI	CCNNGG	2 cut(s)	231, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 592, 632
Bse1I	ACTGG	2 cut(s)	514, 597
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	231, 586
BseGI	GGATG	3 cut(s)	227, 335, 445
BseLI	CCNNNNNNNGG	3 cut(s)	346, 592, 632
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	150, 440
BseNI	ACTGG	2 cut(s)	514, 597
BseXI	GCAGC	3 cut(s)	172, 532, 637
BshFI	GGCC	5 cut(s)	39, 294, 524, 585, 683
BshNI	GGYRCC	1 cut(s)	595
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	3 cut(s)	346, 592, 632
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	5 cut(s)	39, 294, 524, 585, 683
Bsp143I	GATC	3 cut(s)	550, 619, 660
BspACI	CCGC	7 cut(s)	11, 40, 72, 104, 132, 502, 613
BspANI	GGCC	5 cut(s)	39, 294, 524, 585, 683
BspCNI	CTCAG	2 cut(s)	149, 441
BspLI	GGNNCC	4 cut(s)	567, 597, 611, 684
BspMAI	CTGCAG	1 cut(s)	275
BspPI	GGATC	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	514, 597
BssECI	CCNNGG	2 cut(s)	231, 586
BssMI	GATC	3 cut(s)	550, 619, 660
BssNI	GRCGYC	3 cut(s)	69, 101, 129
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	254, 283
BstACI	GRCGYC	3 cut(s)	69, 101, 129
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	271, 538
BstDEI	CTNAG	2 cut(s)	136, 449
BstDSI	CCRYGG	1 cut(s)	586
BstF5I	GGATG	3 cut(s)	227, 335, 445
BstKTI	GATC	3 cut(s)	553, 622, 663
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	3 cut(s)	550, 619, 660
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 137, 330, 431, 440, 542, 554, 647
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	230, 598
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	172, 532, 637
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	5 cut(s)	39, 294, 524, 585, 683
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	3 cut(s)	227, 335, 445
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	271, 538
Cfr13I	GGNCC	1 cut(s)	682
CseI	GACGC	3 cut(s)	77, 109, 137
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	261, 470
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	2 cut(s)	496, 671
CviQI	GTAC	2 cut(s)	261, 470
DdeI	CTNAG	2 cut(s)	136, 449
DpnI	GATC	3 cut(s)	552, 621, 662
DpnII	GATC	3 cut(s)	550, 619, 660
EaeI	YGGCCR	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	711
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	52
FaeI	CATG	2 cut(s)	499, 674
FaiI	YATR	6 cut(s)	15, 357, 497, 507, 672, 701
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	2 cut(s)	495, 670
FbaI	TGATCA	2 cut(s)	550, 660
Fnu4HI	GCNGC	9 cut(s)	11, 40, 72, 104, 132, 186, 503, 546, 651
FokI	GGATG	3 cut(s)	214, 342, 452
Fsp4HI	GCNGC	9 cut(s)	11, 40, 72, 104, 132, 186, 503, 546, 651
GluI	GCNGC	9 cut(s)	11, 40, 72, 104, 132, 186, 503, 546, 651
HaeIII	GGCC	5 cut(s)	39, 294, 524, 585, 683
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	3 cut(s)	77, 109, 137
Hin1I	GRCGYC	3 cut(s)	69, 101, 129
Hin1II	CATG	2 cut(s)	499, 674
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	3 cut(s)	200, 319, 381
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	4 cut(s)	127, 205, 450, 627
Hpy188III	TCNNGA	3 cut(s)	149, 310, 327
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	2 cut(s)	403, 696
HpyCH4III	ACNGT	2 cut(s)	254, 283
HpyCH4IV	ACGT	2 cut(s)	297, 472
HpyCH4V	TGCA	4 cut(s)	273, 540, 653, 670
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 137, 330, 431, 440, 542, 554, 647
HpyF3I	CTNAG	2 cut(s)	136, 449
HpySE526I	ACGT	2 cut(s)	297, 472
Hsp92I	GRCGYC	3 cut(s)	69, 101, 129
Hsp92II	CATG	2 cut(s)	499, 674
Ksp22I	TGATCA	2 cut(s)	550, 660
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	550, 619, 660
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	3 cut(s)	172, 532, 637
LweI	GCATC	3 cut(s)	115, 320, 430
MabI	ACCWGGT	1 cut(s)	598
MaeII	ACGT	2 cut(s)	297, 472
MaeIII	GTNAC	3 cut(s)	25, 298, 512
MalI	GATC	3 cut(s)	552, 621, 662
MboI	GATC	3 cut(s)	550, 619, 660
MboII	GAAGA	2 cut(s)	298, 614
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	619
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	6 cut(s)	194, 287, 363, 528, 711, 734
MluNI	TGGCCA	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	336, 477
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	232, 600
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	8 cut(s)	10, 137, 330, 431, 440, 542, 554, 647
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	3 cut(s)	550, 619, 660
NlaIII	CATG	2 cut(s)	499, 674
NlaIV	GGNNCC	4 cut(s)	567, 597, 611, 684
NmuCI	GTSAC	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	200, 319, 381
PflMI	CCANNNNNTGG	1 cut(s)	592
PkrI	GCNGC	9 cut(s)	12, 41, 73, 105, 133, 187, 504, 547, 652
Ppu21I	YACGTR	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	4 cut(s)	567, 597, 611, 684
PspPI	GGNCC	1 cut(s)	682
PstI	CTGCAG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	262, 471
RsaNI	GTAC	2 cut(s)	261, 470
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	336, 477
SatI	GCNGC	9 cut(s)	11, 40, 72, 104, 132, 186, 503, 546, 651
Sau3AI	GATC	3 cut(s)	550, 619, 660
Sau96I	GGNCC	1 cut(s)	682
ScrFI	CCNGG	2 cut(s)	232, 600
SetI	ASST	7 cut(s)	300, 471, 475, 483, 559, 567, 601
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	3 cut(s)	115, 320, 430
SfcI	CTRYAG	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	6 cut(s)	194, 287, 363, 528, 711, 734
SsiI	CCGC	7 cut(s)	11, 40, 72, 104, 132, 502, 613
StyD4I	CCNGG	2 cut(s)	230, 598
TaaI	ACNGT	2 cut(s)	254, 283
TaiI	ACGT	2 cut(s)	300, 475
TaqI	TCGA	1 cut(s)	168
TasI	AATT	6 cut(s)	194, 287, 363, 528, 711, 734
TauI	GCSGC	6 cut(s)	13, 42, 74, 106, 134, 505
TfiI	GAWTC	3 cut(s)	200, 319, 381
Tru1I	TTAA	2 cut(s)	336, 477
Tru9I	TTAA	2 cut(s)	336, 477
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	3 cut(s)	185, 545, 650
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	2 cut(s)	248, 603
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	592
XapI	RAATTY	4 cut(s)	287, 363, 711, 734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.