Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018181

Physical Location & Seq

Genomic Coordinates Forward (+)

36355613 .. 36357555

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG164400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTGTTTACGCTTCATCGATAACAAGAATGATGGTGGCAGATACCAATGAGCAACAGAGACGAAATCTGCTTGCTAATGGGCTTGGAGTGACTCCTCCCATGGGTGAGACTGTAAAATTTAGCCACGTTACTTTCTTCTGGAATGGGAATTGCTCTGGATGCTTTAACCCTGAAATGGAGGAATATGTAGAAATTCCAAGTGATAGTGGAATCTCATTCAACGTCCAGCCAAAGATGAAGGCATTGGGGATTGCTGAAAAGTCAAGGGATGCTATTCTGAGCAAGAAGTTTGAACAGGTACGTGTTAACCTACCCAATGGGGACATGGCGCGGCATACTGGTGACATTGAGGCCACAATTGTTGCCTGCAAGGCTGATGATCAAGCTGTCAAGGTTCCCATTGCTATTGGAGGCCACGGACTGGCACCTAGTTTTCGGTTCCGCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTTCCCAAGAGAACATAGGGAAAAGAATTCTCACTCTATTATTTCCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

190

Amino Acids

20.67

Weight (kDa)

7.74

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metalloenzyme	PF01676	35 - 132	2.3e-26	Metalloenzyme superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406771 RchiOBHm_Chr7g0227841 RchiOBHm_Chr7g0232491
rosa_laevigata	RLG00000021654 RLG00000031617
rosa_roxburghii	Rroxscaffold_1G00031370 Rroxscaffold_4G00280740 Rroxscaffold_4G00309570 Rroxscaffold_6G00413370
rosa_rugosa	Rorug02G0290200
rosa_samantha	Rh4CG164400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccII	CGCG	1 cut(s)	334
AciI	CCGC	2 cut(s)	334, 445
AclWI	GGATC	1 cut(s)	459
AcsI	RAATTY	4 cut(s)	119, 195, 543, 566
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	4 cut(s)	104, 178, 424, 464
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	223, 296
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw26I	GTCTC	2 cut(s)	55, 104
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	3 cut(s)	354, 415, 513
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	4 cut(s)	119, 195, 543, 566
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	119, 356
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	2 cut(s)	382, 492
BcoDI	GTCTC	2 cut(s)	55, 104
BfaI	CTAG	1 cut(s)	432
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	335, 483
BlsI	GCNGC	2 cut(s)	336, 484
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	4 cut(s)	399, 429, 443, 516
BmsI	GCATC	2 cut(s)	152, 262
Bsa29I	ATCGAT	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	102, 418
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 178, 424, 464
Bse1I	ACTGG	2 cut(s)	346, 429
Bse3DI	GCAATG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	102, 418
BseGI	GGATG	2 cut(s)	167, 277
BseLI	CCNNNNNNNGG	4 cut(s)	104, 178, 424, 464
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	346, 429
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	3 cut(s)	356, 417, 515
BshNI	GGYRCC	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	4 cut(s)	104, 178, 424, 464
BsmAI	GTCTC	2 cut(s)	55, 104
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	3 cut(s)	356, 417, 515
Bsp143I	GATC	3 cut(s)	382, 451, 492
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	2 cut(s)	334, 445
BspANI	GGCC	3 cut(s)	356, 417, 515
BspCNI	CTCAG	1 cut(s)	273
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	4 cut(s)	399, 429, 443, 516
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	346, 429
BssECI	CCNNGG	2 cut(s)	102, 418
BssMI	GATC	3 cut(s)	382, 451, 492
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	75, 370
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	2 cut(s)	102, 418
BstF5I	GGATG	2 cut(s)	167, 277
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	385, 454, 495
BstMAI	GTCTC	2 cut(s)	55, 104
BstMBI	GATC	3 cut(s)	382, 451, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 374, 479
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	356, 417, 515
BsuTUI	ATCGAT	1 cut(s)	20
BtgI	CCRYGG	2 cut(s)	102, 418
BtsCI	GGATG	2 cut(s)	167, 277
Cac8I	GCNNGC	2 cut(s)	75, 370
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	514
ClaI	ATCGAT	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	3 cut(s)	103, 328, 503
CviJI	RGCY	8 cut(s)	85, 126, 232, 356, 377, 389, 417, 515
CviKI_1	RGCY	8 cut(s)	85, 126, 232, 356, 377, 389, 417, 515
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	3 cut(s)	384, 453, 494
DpnII	GATC	3 cut(s)	382, 451, 492
Eco130I	CCWWGG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	106, 331, 506
FaiI	YATR	7 cut(s)	104, 189, 329, 339, 491, 504, 533
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	102, 327, 502
FbaI	TGATCA	2 cut(s)	382, 492
Fnu4HI	GCNGC	2 cut(s)	335, 483
FokI	GGATG	2 cut(s)	174, 284
Fsp4HI	GCNGC	2 cut(s)	335, 483
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	2 cut(s)	335, 483
HaeIII	GGCC	3 cut(s)	356, 417, 515
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	106, 331, 506
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	94, 213
HpaI	GTTAAC	1 cut(s)	310
HphI	GGTGA	2 cut(s)	119, 356
Hpy166II	GTNNAC	2 cut(s)	10, 310
Hpy188I	TCNGA	2 cut(s)	282, 459
Hpy188III	TCNNGA	2 cut(s)	142, 159
Hpy8I	GTNNAC	2 cut(s)	10, 310
HpyAV	CCTTC	2 cut(s)	235, 528
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	3 cut(s)	129, 225, 304
HpyCH4V	TGCA	3 cut(s)	372, 485, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 374, 479
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	3 cut(s)	129, 225, 304
Hsp92II	CATG	3 cut(s)	106, 331, 506
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	2 cut(s)	382, 492
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	382, 451, 492
LpnPI	CCDG	8 cut(s)	127, 144, 186, 242, 284, 327, 382, 410
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	2 cut(s)	152, 262
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	3 cut(s)	129, 225, 304
MaeIII	GTNAC	3 cut(s)	91, 130, 344
MalI	GATC	3 cut(s)	384, 453, 494
MboI	GATC	3 cut(s)	382, 451, 492
MboII	GAAGA	2 cut(s)	130, 446
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	6 cut(s)	119, 151, 195, 360, 543, 566
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	108, 175, 346, 407, 505
MseI	TTAA	2 cut(s)	168, 309
MslI	CAYNNNNRTG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	162, 374, 479
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	382, 451, 492
NlaIII	CATG	3 cut(s)	106, 331, 506
NlaIV	GGNNCC	4 cut(s)	399, 429, 443, 516
NmuCI	GTSAC	2 cut(s)	91, 344
PfeI	GAWTC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	336, 484
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	305
PspN4I	GGNNCC	4 cut(s)	399, 429, 443, 516
PspPI	GGNCC	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	168, 309
SatI	GCNGC	2 cut(s)	335, 483
Sau3AI	GATC	3 cut(s)	382, 451, 492
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	1 cut(s)	88
SetI	ASST	8 cut(s)	132, 228, 303, 307, 315, 391, 399, 433
SfaNI	GCATC	2 cut(s)	152, 262
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	6 cut(s)	119, 151, 195, 360, 543, 566
SsiI	CCGC	2 cut(s)	334, 445
SspMI	CTAG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	3 cut(s)	132, 228, 307
TaqI	TCGA	1 cut(s)	20
TasI	AATT	6 cut(s)	119, 151, 195, 360, 543, 566
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	168, 309
Tru9I	TTAA	2 cut(s)	168, 309
TseFI	GTSAC	2 cut(s)	91, 344
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	2 cut(s)	91, 344
TspDTI	ATGAA	2 cut(s)	6, 254
TspGWI	ACGGA	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	424
XapI	RAATTY	4 cut(s)	119, 195, 543, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.