Rroxscaffold_6G00413370

2,3-bisphosphoglycerate-independent phosphoglycerate

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
35737881 .. 35741057
3177 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00413370.1

Sequence Viewer

Length: 246 bp
ATGGTGCGGCATACTGGTGACATTGAGGCCACAATTATTGCTTGCAAGGCTGCTGATCAAGCTGTCAAGGTTCCCATTGCTATTGGAGGCCACGGACTAGCACCTGGTTTTCGGTTCCTCAAGGATCTTCCGAGTGGTGGTCTTGCCAATGTTGCTGCAACTATGATCAATCTGCATGGATTTGAGGCCCCTTCCCAAGAGAACATAGGGAAAAGAATTCTCACTCTATTATTTCCTAAATTTTGA

Protein Analysis

81

Amino Acids

8.54

Weight (kDa)

9.03

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 7
AclWI GGATC 1 cut(s) 132
AcsI RAATTY 2 cut(s) 216, 239
AfiI CCNNNNNNNGG 1 cut(s) 137
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 1 cut(s) 132
AoxI GGCC 3 cut(s) 27, 88, 186
ApeKI GCWGC 2 cut(s) 50, 155
ApoI RAATTY 2 cut(s) 216, 239
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 29
BbvI GCAGC 2 cut(s) 37, 142
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 2 cut(s) 55, 165
BfaI CTAG 1 cut(s) 98
BisI GCNGC 3 cut(s) 8, 51, 156
BlsI GCNGC 3 cut(s) 9, 52, 157
Bme1390I CCNGG 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 3 cut(s) 72, 116, 189
BmrFI CCNGG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 37, 142
BshFI GGCC 3 cut(s) 29, 90, 188
BslI CCNNNNNNNGG 1 cut(s) 137
BsnI GGCC 3 cut(s) 29, 90, 188
Bsp143I GATC 3 cut(s) 55, 124, 165
BspACI CCGC 1 cut(s) 7
BspANI GGCC 3 cut(s) 29, 90, 188
BspLI GGNNCC 3 cut(s) 72, 116, 189
BspPI GGATC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 3 cut(s) 55, 124, 165
Bst2UI CCWGG 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 91
BstKTI GATC 3 cut(s) 58, 127, 168
BstMBI GATC 3 cut(s) 55, 124, 165
BstMWI GCNNNNNNNGC 3 cut(s) 47, 59, 152
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 37, 142
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 3 cut(s) 29, 90, 188
BtgI CCRYGG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 187
CsiI ACCWGGT 1 cut(s) 103
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 1 cut(s) 176
CviJI RGCY 5 cut(s) 29, 50, 62, 90, 188
CviKI_1 RGCY 5 cut(s) 29, 50, 62, 90, 188
DpnI GATC 3 cut(s) 57, 126, 167
DpnII GATC 3 cut(s) 55, 124, 165
EcoO109I RGGNCCY 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 12, 164, 177, 206
FatI CATG 1 cut(s) 175
FbaI TGATCA 2 cut(s) 55, 165
Fnu4HI GCNGC 3 cut(s) 8, 51, 156
Fsp4HI GCNGC 3 cut(s) 8, 51, 156
FspBI CTAG 1 cut(s) 98
GluI GCNGC 3 cut(s) 8, 51, 156
HaeIII GGCC 3 cut(s) 29, 90, 188
Hin1II CATG 1 cut(s) 179
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 45, 158, 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 59, 152
Hsp92II CATG 1 cut(s) 179
Ksp22I TGATCA 2 cut(s) 55, 165
Kzo9I GATC 3 cut(s) 55, 124, 165
LpnPI CCDG 2 cut(s) 90, 117
Lsp1109I GCAGC 2 cut(s) 37, 142
MabI ACCWGGT 1 cut(s) 103
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 57, 126, 167
MboI GATC 3 cut(s) 55, 124, 165
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 124
MluCI AATT 3 cut(s) 33, 216, 239
MnlI CCTC 4 cut(s) 19, 80, 128, 178
MslI CAYNNNNRTG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 47, 59, 152
NdeII GATC 3 cut(s) 55, 124, 165
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 3 cut(s) 72, 116, 189
NmuCI GTSAC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 9, 52, 157
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 72, 116, 189
PspPI GGNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 3 cut(s) 8, 51, 156
Sau3AI GATC 3 cut(s) 55, 124, 165
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 105
SetI ASST 3 cut(s) 64, 72, 106
SexAI ACCWGGT 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 33, 216, 239
SsiI CCGC 1 cut(s) 7
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 103
TasI AATT 3 cut(s) 33, 216, 239
TauI GCSGC 1 cut(s) 10
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 2 cut(s) 50, 155
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 108
XapI RAATTY 2 cut(s) 216, 239
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.