RLG00000001107

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018542
Physical Location & Seq
Reverse (-)
10417800 .. 10418111
312 bp
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UTR
Exon/CDS
Intron
RLM00000001107

Sequence Viewer

Length: 312 bp
ATGGTCATTGTGGTCTACGCCTGTGCTGGCAAGACCATGGATGCTCTCAAGGTCTACCAGCACATGATAGCCACTGGTGTCACCCCTGCCTCCTACACTTACACCGTACTTATCTCCAGACTTGCACAAGACTTCTCCAATTTGGATTTTGTAGGGTATGCGAAGAAGTATTTCCTTGAAATGTTGGATAGGGGGATGAAGCCCCGTTCTCAAACTTACACAAAAGTTATGAATGCCATTGCCTACCAAGAGCCGGTGGAGGAGGCCAAGGGCCTTGAAAAGATAAAGGCCAAGGGGTTCAGCACATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

104

Amino Acids

11.56

Weight (kDa)

9.19

Isoelectric Point (pI)

20.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 3 - 42 6.7e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018542)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c11g0499521 RchiOBHm_Chr7g0236001
rosa_laevigata RLG00000001107 RLG00000001113 RLG00000001931 RLG00000030010
rosa_multiflora Rmu_sc0000755.1_g000002
rosa_roxburghii Rroxscaffold_3G00225450
rosa_samantha Rh7DG437900 Rh7DG438300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 15, 54
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 179, 278
AoxI GGCC 3 cut(s) 264, 271, 288
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 271
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 36, 267, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 36, 267, 291
BseGI GGATG 2 cut(s) 46, 201
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 275
BshFI GGCC 3 cut(s) 266, 273, 290
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 253
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 3 cut(s) 266, 273, 290
Bsp19I CCATGG 1 cut(s) 36
BspANI GGCC 3 cut(s) 266, 273, 290
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 3 cut(s) 36, 267, 291
BssT1I CCWWGG 3 cut(s) 36, 267, 291
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 46, 201
BsuRI GGCC 3 cut(s) 266, 273, 290
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 46, 201
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 107
CviAII CATG 2 cut(s) 37, 64
CviJI RGCY 6 cut(s) 71, 202, 253, 266, 273, 290
CviKI_1 RGCY 6 cut(s) 71, 202, 253, 266, 273, 290
CviQI GTAC 1 cut(s) 107
Eco130I CCWWGG 3 cut(s) 36, 267, 291
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 3 cut(s) 36, 267, 291
ErhI CCWWGG 3 cut(s) 36, 267, 291
FaeI CATG 2 cut(s) 40, 67
FaiI YATR 4 cut(s) 38, 65, 159, 230
FatI CATG 2 cut(s) 36, 63
FblI GTMKAC 2 cut(s) 15, 54
FokI GGATG 2 cut(s) 53, 208
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 3 cut(s) 266, 273, 290
HapII CCGG 1 cut(s) 254
Hin1II CATG 2 cut(s) 40, 67
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 16, 55
Hpy188III TCNNGA 1 cut(s) 117
Hpy8I GTNNAC 2 cut(s) 16, 55
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 125
Hsp92II CATG 2 cut(s) 40, 67
LpnPI CCDG 7 cut(s) 12, 34, 60, 71, 99, 130, 267
LweI GCATC 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 1 cut(s) 175
MluCI AATT 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 100, 253, 256
MroXI GAANNNNTTC 1 cut(s) 170
MspI CCGG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 238
NcoI CCATGG 1 cut(s) 36
NlaIII CATG 2 cut(s) 40, 67
NmuCI GTSAC 1 cut(s) 79
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 271
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 271
SetI ASST 1 cut(s) 54
SfaNI GCATC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 139
StyI CCWWGG 3 cut(s) 36, 267, 291
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 139
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 212, 245
TspRI CASTG 1 cut(s) 79
XmiI GTMKAC 2 cut(s) 15, 54
XmnI GAANNNNTTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.