Rh7DG437900

Golgi vesicle prefusion complex stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018542
Physical Location & Seq
Forward (+)
62356602 .. 62362029
5428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG437900.1

Sequence Viewer

Length: 351 bp
ATGGCTGTCTACACCATTGTCAATGGGGACTACTTCGCTGCCGACAAGACCAAGGCTGCTCTTAAGGCCTTTCAGCACATGATAGCCACTGGAGTCGCCCCCACCTCCTGCACCTACACTATAACCTTCACAGCTCTTGCATTACACCTCTCTGATGTCCATTTTGTTGGGCTTAAGAAAGTTTTTGGCTGCTGGTCCAATTTTGATAGCTATGGCGGCCATATCCAACGCCCAGGTCCTCGCCGGTCCCACGAATCCAATGGTCACGCCTCTCCTCACCGATCTCTACCAGTTCACCATGGCCTACGCTTACTGGAAAGCCGGCAAGCACAAGGAACGAGCCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

116

Amino Acids

12.7

Weight (kDa)

9.75

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 11 - 47 2.9e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018542)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c11g0499521 RchiOBHm_Chr7g0236001
rosa_laevigata RLG00000001107 RLG00000001113 RLG00000001931 RLG00000030010
rosa_multiflora Rmu_sc0000755.1_g000002
rosa_roxburghii Rroxscaffold_3G00225450
rosa_samantha Rh7DG437900 Rh7DG438300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AciI CCGC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 217
AflII CTTAAG 2 cut(s) 62, 173
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 134, 210
AluI AGCT 2 cut(s) 134, 210
AoxI GGCC 3 cut(s) 66, 217, 301
ApeKI GCWGC 3 cut(s) 38, 56, 189
AspS9I GGNCC 3 cut(s) 195, 236, 246
AsuHPI GGTGA 2 cut(s) 269, 287
AvaII GGWCC 3 cut(s) 195, 236, 246
BbvI GCAGC 3 cut(s) 25, 43, 176
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 234
BfrI CTTAAG 2 cut(s) 62, 173
BisI GCNGC 4 cut(s) 39, 57, 190, 217
BlsI GCNGC 4 cut(s) 40, 58, 191, 218
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 3 cut(s) 195, 236, 246
BmgT120I GGNCC 3 cut(s) 195, 236, 246
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 51, 232, 298
Bse118I RCCGGY 2 cut(s) 243, 321
Bse1I ACTGG 3 cut(s) 94, 290, 318
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 51, 232, 298
BseNI ACTGG 3 cut(s) 94, 290, 318
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 3 cut(s) 25, 43, 176
BsgI GTGCAG 1 cut(s) 94
BshFI GGCC 3 cut(s) 68, 219, 303
BsiSI CCGG 2 cut(s) 244, 322
BslFI GGGAC 2 cut(s) 41, 232
BsmFI GGGAC 2 cut(s) 41, 232
BsnI GGCC 3 cut(s) 68, 219, 303
Bsp143I GATC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 1 cut(s) 216
BspANI GGCC 3 cut(s) 68, 219, 303
BspLI GGNNCC 1 cut(s) 248
BspTI CTTAAG 2 cut(s) 62, 173
BsrFI RCCGGY 2 cut(s) 243, 321
BsrI ACTGG 3 cut(s) 94, 290, 318
BssAI RCCGGY 2 cut(s) 243, 321
BssECI CCNNGG 3 cut(s) 51, 232, 298
BssMI GATC 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 51, 298
Bst2UI CCWGG 1 cut(s) 234
BstAFI CTTAAG 2 cut(s) 62, 173
BstC8I GCNNGC 2 cut(s) 323, 327
BstDSI CCRYGG 1 cut(s) 298
BstKTI GATC 1 cut(s) 284
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 65, 216
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 25, 43, 176
BstXI CCANNNNNNTGG 1 cut(s) 167
BsuRI GGCC 3 cut(s) 68, 219, 303
BtgI CCRYGG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 323, 327
Cfr10I RCCGGY 2 cut(s) 243, 321
Cfr13I GGNCC 3 cut(s) 195, 236, 246
CviAII CATG 2 cut(s) 79, 299
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 51, 298
Eco147I AGGCCT 1 cut(s) 68
Eco47I GGWCC 3 cut(s) 195, 236, 246
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 51, 298
ErhI CCWWGG 2 cut(s) 51, 298
FaeI CATG 2 cut(s) 82, 302
FaiI YATR 5 cut(s) 80, 122, 213, 222, 300
FaqI GGGAC 2 cut(s) 41, 232
FatI CATG 2 cut(s) 78, 298
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 4 cut(s) 39, 57, 190, 217
Fsp4HI GCNGC 4 cut(s) 39, 57, 190, 217
GluI GCNGC 4 cut(s) 39, 57, 190, 217
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 3 cut(s) 68, 219, 303
HapII CCGG 2 cut(s) 244, 322
Hin1II CATG 2 cut(s) 82, 302
HinfI GANTC 2 cut(s) 93, 254
HpaII CCGG 2 cut(s) 244, 322
HphI GGTGA 2 cut(s) 269, 287
Hpy166II GTNNAC 2 cut(s) 10, 295
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 10, 295
HpyAV CCTTC 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 111, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 216
Hsp92II CATG 2 cut(s) 82, 302
KroI GCCGGC 1 cut(s) 321
KroNI GCCGGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 281
LpnPI CCDG 9 cut(s) 75, 121, 178, 219, 246, 257, 299, 303, 335
Lsp1109I GCAGC 3 cut(s) 25, 43, 176
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MluCI AATT 1 cut(s) 199
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 5 cut(s) 115, 158, 249, 280, 285
MroNI GCCGGC 1 cut(s) 321
MseI TTAA 2 cut(s) 63, 174
MspCI CTTAAG 2 cut(s) 62, 173
MspI CCGG 2 cut(s) 244, 322
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 65, 216
NaeI GCCGGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 298
NdeII GATC 1 cut(s) 281
NgoMIV GCCGGC 1 cut(s) 321
NlaIII CATG 2 cut(s) 82, 302
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 263
PceI AGGCCT 1 cut(s) 68
PdiI GCCGGC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 4 cut(s) 40, 58, 191, 218
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 3 cut(s) 195, 236, 246
PspPPI RGGWCCY 1 cut(s) 236
SaqAI TTAA 2 cut(s) 63, 174
SatI GCNGC 4 cut(s) 39, 57, 190, 217
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 3 cut(s) 195, 236, 246
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 234
SetI ASST 7 cut(s) 107, 116, 128, 136, 150, 212, 238
SinI GGWCC 3 cut(s) 195, 236, 246
SmlI CTYRAG 2 cut(s) 62, 173
SmoI CTYRAG 2 cut(s) 62, 173
Sse9I AATT 1 cut(s) 199
SseBI AGGCCT 1 cut(s) 68
SsiI CCGC 1 cut(s) 216
StuI AGGCCT 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 2 cut(s) 51, 298
TasI AATT 1 cut(s) 199
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 63, 174
Tru9I TTAA 2 cut(s) 63, 174
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 3 cut(s) 38, 56, 189
Tsp45I GTSAC 1 cut(s) 263
TspRI CASTG 1 cut(s) 94
Vha464I CTTAAG 2 cut(s) 62, 173
VpaK11BI GGWCC 3 cut(s) 195, 236, 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.