RLG00000001931

Golgi vesicle prefusion complex stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018542
Physical Location & Seq
Forward (+)
23178631 .. 23179104
474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001931

Sequence Viewer

Length: 318 bp
ATGGCCGTCTACACCATTGTCAATGGGGACTACTTCGCTGCCCACAAGACCAAGGCTGCTCTTATGGCCTTTCAGCGCATGATAGCCACTGGAGTCGCCCCCACCTCCTGCACCTACACTATAATCTTCACAGCTCTTGCGTGGAGCATCCACCCCAACTTCCTCTCCAAAGAGTCAAGGAAGATGTACACGTTTTTGCCGGAGGATGGCAATGTAGAGCTAGCCAAGGAGCATACTTCCCATGGTCCTATGATGGAAGGTTTAAAGGGCAGCACAGCCGTAAAAAGAAGGGTCCTGAACATTGTATTTCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

9.42

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 11 - 47 2.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018542)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c11g0499521 RchiOBHm_Chr7g0236001
rosa_laevigata RLG00000001107 RLG00000001113 RLG00000001931 RLG00000030010
rosa_multiflora Rmu_sc0000755.1_g000002
rosa_roxburghii Rroxscaffold_3G00225450
rosa_samantha Rh7DG437900 Rh7DG438300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 9
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 189
AluBI AGCT 2 cut(s) 134, 220
AluI AGCT 2 cut(s) 134, 220
AoxI GGCC 2 cut(s) 3, 66
ApeKI GCWGC 3 cut(s) 38, 56, 270
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 245, 292
AsuNHI GCTAGC 1 cut(s) 220
AvaII GGWCC 2 cut(s) 245, 292
BbvI GCAGC 3 cut(s) 25, 43, 282
BccI CCATC 2 cut(s) 200, 247
BceAI ACGGC 1 cut(s) 263
BfaI CTAG 1 cut(s) 221
BisI GCNGC 3 cut(s) 39, 57, 271
BlsI GCNGC 3 cut(s) 40, 58, 272
Bme18I GGWCC 2 cut(s) 245, 292
BmgT120I GGNCC 2 cut(s) 245, 292
BmiI GGNNCC 1 cut(s) 293
BmsI GCATC 1 cut(s) 156
BmtI GCTAGC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 51, 225, 241
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 51, 225, 241
BseGI GGATG 2 cut(s) 147, 211
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 25, 43, 282
BsgI GTGCAG 1 cut(s) 94
BshFI GGCC 2 cut(s) 5, 68
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 2 cut(s) 5, 68
Bsp1407I TGTACA 1 cut(s) 186
Bsp19I CCATGG 1 cut(s) 241
BspANI GGCC 2 cut(s) 5, 68
BspLI GGNNCC 1 cut(s) 293
BspOI GCTAGC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 51, 225, 241
BssT1I CCWWGG 3 cut(s) 51, 225, 241
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 2 cut(s) 147, 211
BstHHI GCGC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 25, 43, 282
BsuRI GGCC 2 cut(s) 5, 68
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 2 cut(s) 147, 211
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 245, 292
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 79, 242
CviJI RGCY 8 cut(s) 5, 56, 68, 86, 134, 220, 224, 278
CviKI_1 RGCY 8 cut(s) 5, 56, 68, 86, 134, 220, 224, 278
CviQI GTAC 1 cut(s) 187
DraI TTTAAA 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 51, 225, 241
Eco47I GGWCC 2 cut(s) 245, 292
EcoO109I RGGNCCY 1 cut(s) 292
EcoT14I CCWWGG 3 cut(s) 51, 225, 241
ErhI CCWWGG 3 cut(s) 51, 225, 241
FaeI CATG 2 cut(s) 82, 245
FaiI YATR 6 cut(s) 65, 80, 122, 234, 243, 251
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 78, 241
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 39, 57, 271
FokI GGATG 2 cut(s) 134, 218
Fsp4HI GCNGC 3 cut(s) 39, 57, 271
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 77
GluI GCNGC 3 cut(s) 39, 57, 271
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 5, 68
HapII CCGG 1 cut(s) 200
HhaI GCGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 82, 245
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 2 cut(s) 93, 173
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 10, 189
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 2 cut(s) 10, 189
HpyAV CCTTC 2 cut(s) 251, 282
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 82, 245
HspAI GCGC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 144, 229
LpnPI CCDG 4 cut(s) 75, 121, 213, 308
Lsp1109I GCAGC 3 cut(s) 25, 43, 282
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 191
MboII GAAGA 2 cut(s) 118, 193
MlyI GAGTC 2 cut(s) 102, 182
MnlI CCTC 3 cut(s) 115, 173, 196
MseI TTAA 1 cut(s) 263
MspI CCGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 241
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 82, 245
NlaIV GGNNCC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 40, 58, 272
PleI GAGTC 2 cut(s) 101, 181
PpsI GAGTC 2 cut(s) 101, 181
PpuMI RGGWCCY 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 2 cut(s) 245, 292
PspPPI RGGWCCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 3 cut(s) 39, 57, 271
Sau96I GGNCC 2 cut(s) 245, 292
SchI GAGTC 2 cut(s) 102, 182
SetI ASST 6 cut(s) 107, 116, 136, 194, 222, 262
SfaNI GCATC 1 cut(s) 156
SinI GGWCC 2 cut(s) 245, 292
SspMI CTAG 1 cut(s) 221
StyI CCWWGG 3 cut(s) 51, 225, 241
TaiI ACGT 1 cut(s) 194
TatI WGTACW 1 cut(s) 186
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 94
TseI GCWGC 3 cut(s) 38, 56, 270
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 245, 292
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.