Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018648

Physical Location & Seq

Genomic Coordinates Reverse (-)

11054159 .. 11054832

Gene Structure 674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001159

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTGTTATTGTTTCAACGTGATAGGGAGACCCATTTGAAGATAATTGAAATTCCAAGCCAAGCTTCGAAGCTCAACCATGCCCGGTGTATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTAATTGATAGTTATGGTAAGGCCGGCATTGTTCAGGAGTCGGTCAAGCTTCTCAATCAGATGAAGAAACTGGGTGTGAAGCAAAGTCGTGAGGAAATAGAACCCACTAGGCAAACTTATAATATTATGATTTGGGGTTTCTTCTTGTCCTTGAGATTGGAGACTGCAAAGCGGTTTTTCGAGGACATGAAATGTAGAGGAATTAGTCCTGATGTTGTCACCTATAACACGAGGATTAATGGGTATAATCAGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTAAAAGGAGACATATCTAGGGGCGTCATTTGGGCGTGCACCCCGAGGCTAGCAAAAGGGTCAAAGGCAGCTCGGGGGCGCGCTGGTGTCAGCACAATGGTTAGCGAGGCTAACTTGGTGCTGGAAACTAGAGAGGCTAGCACGGTCCGGTACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

199

Amino Acids

22.69

Weight (kDa)

9.26

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	49 - 96	1.1e-06	PPR repeat family
PPR_2	PF13041	87 - 131	1.6e-13	PPR repeat family
PPR_1	PF12854	115 - 146	1.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018648)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001159
rosa_multiflora	Rmu_sc0000694.1_g000012 Rmu_sc0032479.1_g000003
rosa_roxburghii	Rroxscaffold_3G00226020
rosa_samantha	Rh5BG354100 Rh5DG369600 Rh7AG445400 Rh7BG417700 Rh7DG434200
rosa_wichuraiana	Rw7G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccII	CGCG	1 cut(s)	519
AciI	CCGC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	17, 40, 50
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	5 cut(s)	65, 73, 196, 406, 509
AluI	AGCT	5 cut(s)	65, 73, 196, 406, 509
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	3 cut(s)	23, 302, 441
Alw44I	GTGCAC	1 cut(s)	475
Ama87I	CYCGRG	2 cut(s)	481, 510
AoxI	GGCC	2 cut(s)	168, 417
ApaLI	GTGCAC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	51
AseI	ATTAAT	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	519, 521
AspS9I	GGNCC	2 cut(s)	133, 583
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	68
AsuNHI	GCTAGC	2 cut(s)	487, 575
AvaI	CYCGRG	2 cut(s)	481, 510
AvaII	GGWCC	2 cut(s)	133, 583
BaeGI	GKGCMC	1 cut(s)	479
BauI	CACGAG	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	1 cut(s)	403
BciVI	GTATCC	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	3 cut(s)	23, 302, 441
BfaI	CTAG	6 cut(s)	98, 255, 456, 488, 567, 576
BfuI	GTATCC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	133, 583
BmeT110I	CYCGRG	2 cut(s)	481, 510
BmgT120I	GGNCC	2 cut(s)	133, 583
BmrFI	CCNGG	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	227
BmtI	GCTAGC	2 cut(s)	491, 579
BmuI	ACTGGG	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	2 cut(s)	133, 418
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	222
BsePI	GCGCGC	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	170, 419
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	2 cut(s)	481, 510
BsiSI	CCGG	3 cut(s)	85, 171, 586
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	3 cut(s)	23, 302, 441
BsnI	GGCC	2 cut(s)	170, 419
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	2 cut(s)	481, 510
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	479
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	2 cut(s)	170, 419
BspFNI	CGCG	1 cut(s)	519
BspOI	GCTAGC	2 cut(s)	491, 579
BspT104I	TTCGAA	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	482
BssHII	GCGCGC	1 cut(s)	517
BssNI	GRCGYC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	462
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	5 cut(s)	172, 475, 489, 519, 577
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	133, 418
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	2 cut(s)	519, 521
BstMAI	GTCTC	3 cut(s)	23, 302, 441
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	518
BsuI	GTATCC	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	170, 419
BtsCI	GGATG	2 cut(s)	133, 418
Cac8I	GCNNGC	5 cut(s)	172, 475, 489, 519, 577
CfoI	GCGC	2 cut(s)	519, 521
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	133, 583
CpoI	CGGWCCG	1 cut(s)	583
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	589
CspI	CGGWCCG	1 cut(s)	583
CviAII	CATG	2 cut(s)	80, 334
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	133, 583
Eco88I	CYCGRG	2 cut(s)	481, 510
EcoO109I	RGGNCCY	1 cut(s)	133
FaeI	CATG	2 cut(s)	83, 337
FaiI	YATR	9 cut(s)	81, 104, 162, 267, 275, 335, 372, 393, 452
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	2 cut(s)	79, 333
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	2 cut(s)	140, 425
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	6 cut(s)	98, 255, 456, 488, 567, 576
GlaI	GCGC	2 cut(s)	518, 520
GluI	GCNGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	170, 419
HapII	CCGG	3 cut(s)	85, 171, 586
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	2 cut(s)	519, 521
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	2 cut(s)	83, 337
Hin6I	GCGC	2 cut(s)	517, 519
HinP1I	GCGC	2 cut(s)	517, 519
HindIII	AAGCTT	2 cut(s)	63, 194
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	3 cut(s)	85, 171, 586
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	182, 236, 356
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	121, 314, 477
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	83, 337
HspAI	GCGC	2 cut(s)	517, 519
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	98, 167, 184, 203, 369, 507, 545
Lsp1109I	GCAGC	1 cut(s)	518
MaeI	CTAG	6 cut(s)	98, 255, 456, 488, 567, 576
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	52, 130, 223, 280
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	4 cut(s)	45, 51, 150, 348
MlyI	GAGTC	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	3 cut(s)	384, 402, 440
MspI	CCGG	3 cut(s)	85, 171, 586
MspR9I	CCNGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	519
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	1 cut(s)	85
NgoMIV	GCCGGC	1 cut(s)	170
NheI	GCTAGC	2 cut(s)	487, 575
NlaIII	CATG	2 cut(s)	83, 337
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	364
NspV	TTCGAA	1 cut(s)	68
PauI	GCGCGC	1 cut(s)	517
PdiI	GCCGGC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	133, 583
PspPPI	RGGWCCY	1 cut(s)	133
PteI	GCGCGC	1 cut(s)	517
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
Rsr2I	CGGWCCG	1 cut(s)	583
RsrII	CGGWCCG	1 cut(s)	583
SaqAI	TTAA	3 cut(s)	384, 402, 440
SatI	GCNGC	1 cut(s)	507
Sau96I	GGNCC	2 cut(s)	133, 583
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	8 cut(s)	22, 67, 75, 138, 198, 371, 408, 511
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	2 cut(s)	133, 583
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	4 cut(s)	45, 51, 150, 348
SsiI	CCGC	1 cut(s)	319
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	6 cut(s)	98, 255, 456, 488, 567, 576
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	68, 327
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	4 cut(s)	45, 51, 150, 348
Tru1I	TTAA	3 cut(s)	384, 402, 440
Tru9I	TTAA	3 cut(s)	384, 402, 440
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	130, 134, 224, 350
VneI	GTGCAC	1 cut(s)	475
VpaK11BI	GGWCC	2 cut(s)	133, 583
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	1 cut(s)	51
XspI	CTAG	6 cut(s)	98, 255, 456, 488, 567, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.